Tomato leaf curl Gujarat virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000841205.1 |
| Isolate |
India: Uttar Pradesh, Varanasi |
| Release date |
2015/2/12 |
| Submitter |
Chakraborty,S., Pandey,P.K., Banerjee,M.K., Kalloo,G., Fauquet,C.M. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
TAATATTACCGGATGGCCGCGATTTTTTTTTTTGGACCCCACAACGCACTAACTGACAAAGACATGCGGACCAATCACCTGACGCGCTCAAAGCTTAATTGTTTTGTGTTTTCTATTTAAACTTGGCCCCAAGTATTGTAGTTCGTACTATGTGGGATCCTTTGTTAAACGAGTTTCCTGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTTCAATTAGTAGAAAAGACTTATTCTCCTGACACAGTCGGTTACGATTTAATCAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATGCTCATTTTCACGCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATCGGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAGGCATGGGCCAACCGGCCCATGTATCGGAAGCCCAGAATCTACAGAATGTACAGGAGCCCTGATGTGCCTAAGGGCTGTGAGGGTCCGTGTAAGGTCCAATCGTTTGATGCTAAGAACGATATTGGTCACATGGGTAAGGTGATCTGTTTGTCCGATGTGACGAGGGGAATTGGGCTGACCCATCGAGTGGGTAAACGTTTTTGCGTTAAGTCTTTGTATTTCGTCGGCAAGATCTGGATGGACGAGAATATTAAGGTGAAGAACCACACCAACACCGTTATGTTTTGGATAGTACGTGATAGGCGTCCTAGTGGGACTCCCAATGATTTTCAGCAGGTTTTTAACGTATATGATAATGAGCCCTCTACTGCGACTGTTAAGAATGACCAGCGTGATCGCTTTCAAGTCTTACGGAGGTTTCAAGCGACTGTTACTGGAGGACAATATGCAGCCAAGGAGCAGGCGATAATTAGAAGATTTTTTCGTGTTAATAATTACGTAGTTTATAATCACCAGGAAGCTGGGAAGTACGAAAATCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCGACTCTCAAAGTGAGGAGTTATTTCTATGACTCAGTCACAAACTAATAAATATTAAATTTTATTATATTTGAACTGTCTACAAATGTTGTTTGCGTCAATGCATCCCATAGTACATAATTCACTGCTCTAATTACATTATTCAAACTAATTACACCCAAATTATTAAGAAATTTCATCACTTGTGTTTTAAATACCCTTAAGAAACGACCAGTCGGAGGCTGTGAGGTCATCCAGCATCGGTAGGTTAGGAAACATTTGTGTATCCCCAACACTTTCCTCAGGTTGTGATTGAACTGTATCTGGACGGTGATGATGTCTTCGTTCATCAGGAAGGGCCGGTTTTGGTGCTCTGTTATCTTGAAATATAGGGGATTTTGAATCTCCCAGATAAACACGCCATTCTCTGCTTGAGCTGCAGTGATGAATTCCCCTGTGCGTGAATCCATGGTCGTTGCAGGTTAATGCTATGAAGTAAGAACAGCCACACGGTAGATCAACTCGTCGACGTCTGGTCCCCTTCTTGGCTAGCCTGTGCTGTACTTTGATTGGTACTTGAGTAGAGTGGGCCTTCGAGGGTGACGAAGGTTGCATTTTTTAAAGCCCAGTTTTTTAGTGCAGAATTCTTTTCCTCATCCAAGTATTCTTTATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAGGTAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCATCATTACTGTAAACCTTTGGGCTAAGGTCTAGATGACCACACAAATAATTATGTGGTCCCAATGATCTGGCCCACATAGTCTTCCCCGTCCTACTGTCACCCTCAATTACTATACTTATGGGTCTCAGAGGCCGCGCAGCGGGACTGCAGACGTTCTCGGCAGCCCACGCTTCAAGTTCTTCTGGAACTTGGTCGAAAGAAGAAGATATAAAAGGTGAAACATAAACATCCATTGGAGGTGTAAAAATCCTATCTAAATTAGAATTTAAATTGTGAAATTGTAAAACAAAATCTTTGGGAGCTTTCTCCCTTAATATATTGAGGGCCTGAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCGTCCATCGACTTGGAAAACTCCATGATCAATGACGTCTCCGTCTTTTTCCATGTAGGATTTGACATCGCTTGAGCTCTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATGTGAGGTCGAAGAATCTATTGTTTTTGCATTGGAACTTTCCTTCGAACTGGATGAGCACATGCAAGTGAGGAGTCCCATCATCGTGAAGCTCTCTGCAAATTCTAATAAATTTTTTGAAAGTGGGTGTTTGGAGATTTAATAATTGGGAAAGTGCCTCTTCTTTAGTTAGAGAGCACTTGGGATAAGTGAGAAAATAATTTTTGGCATTTATTTTAAAGCGATTGGGGGCTGCCATGTTGACTTGGTCAATCGGTGTCTTTCAACTCTCTCTATGTATCGGTGTATTGGAGTCCTATATATATGGAGACTCCAATGGCATAAATGTAAATATTGAACTTTAAATCAAAACCCTAACGCTCCAAAAAGCGGCCATCCGTA
Gene Information
|
NCBI Accession
|
NP_783152.1
|
|
Location
|
150-497 |
|
Gene Name
|
AV 2 |
|
Protein Name
|
pre-coat protein |
|
Coding Region
|
ATGTGGGATCCTTTGTTAAACGAGTTTCCTGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTTCAATTAGTAGAAAAGACTTATTCTCCTGACACAGTCGGTTACGATTTAATCAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATGCTCATTTTCACGCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATCGGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAGGCATGGGCCAACCGGCCCATGTATCGGAAGCCCAGAATCTACAGAATGTACAGGAGCCCTGA |
|
Protein Sequence
|
MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTVGYDLIRDLISVIRARNYVEATSRYAHFHARFEGTSPSQLRQPIGEPCCCPHCPRHQSKGMGQPAHVSEAQNLQNVQEP |
|
NCBI Accession
|
NP_783153.1
|
|
Location
|
310-1080 |
|
Gene Name
|
AV 1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGACCAGCAGATATGCTCATTTTCACGCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATCGGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAGGCATGGGCCAACCGGCCCATGTATCGGAAGCCCAGAATCTACAGAATGTACAGGAGCCCTGATGTGCCTAAGGGCTGTGAGGGTCCGTGTAAGGTCCAATCGTTTGATGCTAAGAACGATATTGGTCACATGGGTAAGGTGATCTGTTTGTCCGATGTGACGAGGGGAATTGGGCTGACCCATCGAGTGGGTAAACGTTTTTGCGTTAAGTCTTTGTATTTCGTCGGCAAGATCTGGATGGACGAGAATATTAAGGTGAAGAACCACACCAACACCGTTATGTTTTGGATAGTACGTGATAGGCGTCCTAGTGGGACTCCCAATGATTTTCAGCAGGTTTTTAACGTATATGATAATGAGCCCTCTACTGCGACTGTTAAGAATGACCAGCGTGATCGCTTTCAAGTCTTACGGAGGTTTCAAGCGACTGTTACTGGAGGACAATATGCAGCCAAGGAGCAGGCGATAATTAGAAGATTTTTTCGTGTTAATAATTACGTAGTTTATAATCACCAGGAAGCTGGGAAGTACGAAAATCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCGACTCTCAAAGTGAGGAGTTATTTCTATGACTCAGTCACAAACTAA |
|
Protein Sequence
|
MSKRPADMLIFTPASKVRRRLNFDSPSVSRAAAPIVRVTKAKAWANRPMYRKPRIYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHRVGKRFCVKSLYFVGKIWMDENIKVKNHTNTVMFWIVRDRRPSGTPNDFQQVFNVYDNEPSTATVKNDQRDRFQVLRRFQATVTGGQYAAKEQAIIRRFFRVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKVRSYFYDSVTN |
|
NCBI Accession
|
NP_783154.1
|
|
Location
|
1077-1481 |
|
Gene Name
|
AC 3 |
|
Protein Name
|
replicational enhancer protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAATTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTATATTTCAAGATAACAGAGCACCAAAACCGGCCCTTCCTGATGAACGAAGACATCATCACCGTCCAGATACAGTTCAATCACAACCTGAGGAAAGTGTTGGGGATACACAAATGTTTCCTAACCTACCGATGCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTATTTAAAACACAAGTGATGAAATTTCTTAATAATTTGGGTGTAATTAGTTTGAATAATGTAATTAGAGCAGTGAATTATGTACTATGGGATGCATTGACGCAAACAACATTTGTAGACAGTTCAAATATAATAAAATTTAATATTTATTAG |
|
Protein Sequence
|
MDSRTGEFITAAQAENGVFIWEIQNPLYFKITEHQNRPFLMNEDIITVQIQFNHNLRKVLGIHKCFLTYRCWMTSQPPTGRFLRVFKTQVMKFLNNLGVISLNNVIRAVNYVLWDALTQTTFVDSSNIIKFNIY |
|
NCBI Accession
|
NP_783155.1
|
|
Location
|
1222-1626 |
|
Gene Name
|
AC 2 |
|
Protein Name
|
transcriptional activator protein |
|
Coding Region
|
ATGCAACCTTCGTCACCCTCGAAGGCCCACTCTACTCAAGTACCAATCAAAGTACAGCACAGGCTAGCCAAGAAGGGGACCAGACGTCGACGAGTTGATCTACCGTGTGGCTGTTCTTACTTCATAGCATTAACCTGCAACGACCATGGATTCACGCACAGGGGAATTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTATATTTCAAGATAACAGAGCACCAAAACCGGCCCTTCCTGATGAACGAAGACATCATCACCGTCCAGATACAGTTCAATCACAACCTGAGGAAAGTGTTGGGGATACACAAATGTTTCCTAACCTACCGATGCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTATTTAA |
|
Protein Sequence
|
MQPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALTCNDHGFTHRGIHHCSSSREWRVYLGDSKSPIFQDNRAPKPALPDERRHHHRPDTVQSQPEESVGDTQMFPNLPMLDDLTASDWSFLKGI |
|
NCBI Accession
|
NP_783156.1
|
|
Location
|
1529-2614 |
|
Gene Name
|
AC 1 |
|
Protein Name
|
replicase |
|
Coding Region
|
ATGGCAGCCCCCAATCGCTTTAAAATAAATGCCAAAAATTATTTTCTCACTTATCCCAAGTGCTCTCTAACTAAAGAAGAGGCACTTTCCCAATTATTAAATCTCCAAACACCCACTTTCAAAAAATTTATTAGAATTTGCAGAGAGCTTCACGATGATGGGACTCCTCACTTGCATGTGCTCATCCAGTTCGAAGGAAAGTTCCAATGCAAAAACAATAGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCAAGCGATGTCAAATCCTACATGGAAAAAGACGGAGACGTCATTGATCATGGAGTTTTCCAAGTCGATGGACGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTCAGGCCCTCAATATATTAAGGGAGAAAGCTCCCAAAGATTTTGTTTTACAATTTCACAATTTAAATTCTAATTTAGATAGGATTTTTACACCTCCAATGGATGTTTATGTTTCACCTTTTATATCTTCTTCTTTCGACCAAGTTCCAGAAGAACTTGAAGCGTGGGCTGCCGAGAACGTCTGCAGTCCCGCTGCGCGGCCTCTGAGACCCATAAGTATAGTAATTGAGGGTGACAGTAGGACGGGGAAGACTATGTGGGCCAGATCATTGGGACCACATAATTATTTGTGTGGTCATCTAGACCTTAGCCCAAAGGTTTACAGTAATGATGCCTGGTACAACGTCATTGATGACGTCGACCCCCACTACCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAGTACGGGAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTACCTTCCTCTGCAATCCAGGACCCAACTCCAGCTATAAAGAATACTTGGATGAGGAAAAGAATTCTGCACTAAAAAACTGGGCTTTAAAAAATGCAACCTTCGTCACCCTCGAAGGCCCACTCTACTCAAGTACCAATCAAAGTACAGCACAGGCTAGCCAAGAAGGGGACCAGACGTCGACGAGTTGA |
|
Protein Sequence
|
MAAPNRFKINAKNYFLTYPKCSLTKEEALSQLLNLQTPTFKKFIRICRELHDDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKSYMEKDGDVIDHGVFQVDGRSARGGCQSANDAYAEAINSGSKAQALNILREKAPKDFVLQFHNLNSNLDRIFTPPMDVYVSPFISSSFDQVPEELEAWAAENVCSPAARPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTTFLCNPGPNSSYKEYLDEEKNSALKNWALKNATFVTLEGPLYSSTNQSTAQASQEGDQTSTS |
|
NCBI Accession
|
NP_783157.1
|
|
Location
|
2164-2460 |
|
Gene Name
|
AC 4 |
|
Protein Name
|
transcriptional regulator protein |
|
Coding Region
|
ATGATGGGACTCCTCACTTGCATGTGCTCATCCAGTTCGAAGGAAAGTTCCAATGCAAAAACAATAGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCAAGCGATGTCAAATCCTACATGGAAAAAGACGGAGACGTCATTGATCATGGAGTTTTCCAAGTCGATGGACGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTCAGGCCCTCAATATATTAA |
|
Protein Sequence
|
MMGLLTCMCSSSSKESSNAKTIDSSTSHPQPGQHISIRTFRELRAQAMSNPTWKKTETSLIMEFSKSMDDQLEEVANLPTTHMPRQSIQGPKLRPSIY |