Tomato leaf curl Gujarat virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000841205.1
Isolate India: Uttar Pradesh, Varanasi
Release date 2015/2/12
Submitter Chakraborty,S., Pandey,P.K., Banerjee,M.K., Kalloo,G., Fauquet,C.M.
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_004558
TAATATTACCGGATGGCCGCGATTTTTTTTTTTGGACCCCACAACGCACTAACTGACAAAGACATGCGGACCAATCACCTGACGCGCTCAAAGCTTAATTGTTTTGTGTTTTCTATTTAAACTTGGCCCCAAGTATTGTAGTTCGTACTATGTGGGATCCTTTGTTAAACGAGTTTCCTGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTTCAATTAGTAGAAAAGACTTATTCTCCTGACACAGTCGGTTACGATTTAATCAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATGCTCATTTTCACGCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATCGGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAGGCATGGGCCAACCGGCCCATGTATCGGAAGCCCAGAATCTACAGAATGTACAGGAGCCCTGATGTGCCTAAGGGCTGTGAGGGTCCGTGTAAGGTCCAATCGTTTGATGCTAAGAACGATATTGGTCACATGGGTAAGGTGATCTGTTTGTCCGATGTGACGAGGGGAATTGGGCTGACCCATCGAGTGGGTAAACGTTTTTGCGTTAAGTCTTTGTATTTCGTCGGCAAGATCTGGATGGACGAGAATATTAAGGTGAAGAACCACACCAACACCGTTATGTTTTGGATAGTACGTGATAGGCGTCCTAGTGGGACTCCCAATGATTTTCAGCAGGTTTTTAACGTATATGATAATGAGCCCTCTACTGCGACTGTTAAGAATGACCAGCGTGATCGCTTTCAAGTCTTACGGAGGTTTCAAGCGACTGTTACTGGAGGACAATATGCAGCCAAGGAGCAGGCGATAATTAGAAGATTTTTTCGTGTTAATAATTACGTAGTTTATAATCACCAGGAAGCTGGGAAGTACGAAAATCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCGACTCTCAAAGTGAGGAGTTATTTCTATGACTCAGTCACAAACTAATAAATATTAAATTTTATTATATTTGAACTGTCTACAAATGTTGTTTGCGTCAATGCATCCCATAGTACATAATTCACTGCTCTAATTACATTATTCAAACTAATTACACCCAAATTATTAAGAAATTTCATCACTTGTGTTTTAAATACCCTTAAGAAACGACCAGTCGGAGGCTGTGAGGTCATCCAGCATCGGTAGGTTAGGAAACATTTGTGTATCCCCAACACTTTCCTCAGGTTGTGATTGAACTGTATCTGGACGGTGATGATGTCTTCGTTCATCAGGAAGGGCCGGTTTTGGTGCTCTGTTATCTTGAAATATAGGGGATTTTGAATCTCCCAGATAAACACGCCATTCTCTGCTTGAGCTGCAGTGATGAATTCCCCTGTGCGTGAATCCATGGTCGTTGCAGGTTAATGCTATGAAGTAAGAACAGCCACACGGTAGATCAACTCGTCGACGTCTGGTCCCCTTCTTGGCTAGCCTGTGCTGTACTTTGATTGGTACTTGAGTAGAGTGGGCCTTCGAGGGTGACGAAGGTTGCATTTTTTAAAGCCCAGTTTTTTAGTGCAGAATTCTTTTCCTCATCCAAGTATTCTTTATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAGGTAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCATCATTACTGTAAACCTTTGGGCTAAGGTCTAGATGACCACACAAATAATTATGTGGTCCCAATGATCTGGCCCACATAGTCTTCCCCGTCCTACTGTCACCCTCAATTACTATACTTATGGGTCTCAGAGGCCGCGCAGCGGGACTGCAGACGTTCTCGGCAGCCCACGCTTCAAGTTCTTCTGGAACTTGGTCGAAAGAAGAAGATATAAAAGGTGAAACATAAACATCCATTGGAGGTGTAAAAATCCTATCTAAATTAGAATTTAAATTGTGAAATTGTAAAACAAAATCTTTGGGAGCTTTCTCCCTTAATATATTGAGGGCCTGAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCGTCCATCGACTTGGAAAACTCCATGATCAATGACGTCTCCGTCTTTTTCCATGTAGGATTTGACATCGCTTGAGCTCTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATGTGAGGTCGAAGAATCTATTGTTTTTGCATTGGAACTTTCCTTCGAACTGGATGAGCACATGCAAGTGAGGAGTCCCATCATCGTGAAGCTCTCTGCAAATTCTAATAAATTTTTTGAAAGTGGGTGTTTGGAGATTTAATAATTGGGAAAGTGCCTCTTCTTTAGTTAGAGAGCACTTGGGATAAGTGAGAAAATAATTTTTGGCATTTATTTTAAAGCGATTGGGGGCTGCCATGTTGACTTGGTCAATCGGTGTCTTTCAACTCTCTCTATGTATCGGTGTATTGGAGTCCTATATATATGGAGACTCCAATGGCATAAATGTAAATATTGAACTTTAAATCAAAACCCTAACGCTCCAAAAAGCGGCCATCCGTA

Gene Information

NCBI Accession NP_783152.1
Location 150-497
Gene Name AV 2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCTTTGTTAAACGAGTTTCCTGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTTCAATTAGTAGAAAAGACTTATTCTCCTGACACAGTCGGTTACGATTTAATCAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATGCTCATTTTCACGCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATCGGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAGGCATGGGCCAACCGGCCCATGTATCGGAAGCCCAGAATCTACAGAATGTACAGGAGCCCTGA
Protein Sequence MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTVGYDLIRDLISVIRARNYVEATSRYAHFHARFEGTSPSQLRQPIGEPCCCPHCPRHQSKGMGQPAHVSEAQNLQNVQEP

NCBI Accession NP_783153.1
Location 310-1080
Gene Name AV 1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATGCTCATTTTCACGCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATCGGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAGGCATGGGCCAACCGGCCCATGTATCGGAAGCCCAGAATCTACAGAATGTACAGGAGCCCTGATGTGCCTAAGGGCTGTGAGGGTCCGTGTAAGGTCCAATCGTTTGATGCTAAGAACGATATTGGTCACATGGGTAAGGTGATCTGTTTGTCCGATGTGACGAGGGGAATTGGGCTGACCCATCGAGTGGGTAAACGTTTTTGCGTTAAGTCTTTGTATTTCGTCGGCAAGATCTGGATGGACGAGAATATTAAGGTGAAGAACCACACCAACACCGTTATGTTTTGGATAGTACGTGATAGGCGTCCTAGTGGGACTCCCAATGATTTTCAGCAGGTTTTTAACGTATATGATAATGAGCCCTCTACTGCGACTGTTAAGAATGACCAGCGTGATCGCTTTCAAGTCTTACGGAGGTTTCAAGCGACTGTTACTGGAGGACAATATGCAGCCAAGGAGCAGGCGATAATTAGAAGATTTTTTCGTGTTAATAATTACGTAGTTTATAATCACCAGGAAGCTGGGAAGTACGAAAATCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCGACTCTCAAAGTGAGGAGTTATTTCTATGACTCAGTCACAAACTAA
Protein Sequence MSKRPADMLIFTPASKVRRRLNFDSPSVSRAAAPIVRVTKAKAWANRPMYRKPRIYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHRVGKRFCVKSLYFVGKIWMDENIKVKNHTNTVMFWIVRDRRPSGTPNDFQQVFNVYDNEPSTATVKNDQRDRFQVLRRFQATVTGGQYAAKEQAIIRRFFRVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKVRSYFYDSVTN

NCBI Accession NP_783154.1
Location 1077-1481
Gene Name AC 3
Protein Name replicational enhancer protein
Coding Region ATGGATTCACGCACAGGGGAATTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTATATTTCAAGATAACAGAGCACCAAAACCGGCCCTTCCTGATGAACGAAGACATCATCACCGTCCAGATACAGTTCAATCACAACCTGAGGAAAGTGTTGGGGATACACAAATGTTTCCTAACCTACCGATGCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTATTTAAAACACAAGTGATGAAATTTCTTAATAATTTGGGTGTAATTAGTTTGAATAATGTAATTAGAGCAGTGAATTATGTACTATGGGATGCATTGACGCAAACAACATTTGTAGACAGTTCAAATATAATAAAATTTAATATTTATTAG
Protein Sequence MDSRTGEFITAAQAENGVFIWEIQNPLYFKITEHQNRPFLMNEDIITVQIQFNHNLRKVLGIHKCFLTYRCWMTSQPPTGRFLRVFKTQVMKFLNNLGVISLNNVIRAVNYVLWDALTQTTFVDSSNIIKFNIY

NCBI Accession NP_783155.1
Location 1222-1626
Gene Name AC 2
Protein Name transcriptional activator protein
Coding Region ATGCAACCTTCGTCACCCTCGAAGGCCCACTCTACTCAAGTACCAATCAAAGTACAGCACAGGCTAGCCAAGAAGGGGACCAGACGTCGACGAGTTGATCTACCGTGTGGCTGTTCTTACTTCATAGCATTAACCTGCAACGACCATGGATTCACGCACAGGGGAATTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTATATTTCAAGATAACAGAGCACCAAAACCGGCCCTTCCTGATGAACGAAGACATCATCACCGTCCAGATACAGTTCAATCACAACCTGAGGAAAGTGTTGGGGATACACAAATGTTTCCTAACCTACCGATGCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTATTTAA
Protein Sequence MQPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALTCNDHGFTHRGIHHCSSSREWRVYLGDSKSPIFQDNRAPKPALPDERRHHHRPDTVQSQPEESVGDTQMFPNLPMLDDLTASDWSFLKGI

NCBI Accession NP_783156.1
Location 1529-2614
Gene Name AC 1
Protein Name replicase
Coding Region ATGGCAGCCCCCAATCGCTTTAAAATAAATGCCAAAAATTATTTTCTCACTTATCCCAAGTGCTCTCTAACTAAAGAAGAGGCACTTTCCCAATTATTAAATCTCCAAACACCCACTTTCAAAAAATTTATTAGAATTTGCAGAGAGCTTCACGATGATGGGACTCCTCACTTGCATGTGCTCATCCAGTTCGAAGGAAAGTTCCAATGCAAAAACAATAGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCAAGCGATGTCAAATCCTACATGGAAAAAGACGGAGACGTCATTGATCATGGAGTTTTCCAAGTCGATGGACGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTCAGGCCCTCAATATATTAAGGGAGAAAGCTCCCAAAGATTTTGTTTTACAATTTCACAATTTAAATTCTAATTTAGATAGGATTTTTACACCTCCAATGGATGTTTATGTTTCACCTTTTATATCTTCTTCTTTCGACCAAGTTCCAGAAGAACTTGAAGCGTGGGCTGCCGAGAACGTCTGCAGTCCCGCTGCGCGGCCTCTGAGACCCATAAGTATAGTAATTGAGGGTGACAGTAGGACGGGGAAGACTATGTGGGCCAGATCATTGGGACCACATAATTATTTGTGTGGTCATCTAGACCTTAGCCCAAAGGTTTACAGTAATGATGCCTGGTACAACGTCATTGATGACGTCGACCCCCACTACCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAGTACGGGAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTACCTTCCTCTGCAATCCAGGACCCAACTCCAGCTATAAAGAATACTTGGATGAGGAAAAGAATTCTGCACTAAAAAACTGGGCTTTAAAAAATGCAACCTTCGTCACCCTCGAAGGCCCACTCTACTCAAGTACCAATCAAAGTACAGCACAGGCTAGCCAAGAAGGGGACCAGACGTCGACGAGTTGA
Protein Sequence MAAPNRFKINAKNYFLTYPKCSLTKEEALSQLLNLQTPTFKKFIRICRELHDDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKSYMEKDGDVIDHGVFQVDGRSARGGCQSANDAYAEAINSGSKAQALNILREKAPKDFVLQFHNLNSNLDRIFTPPMDVYVSPFISSSFDQVPEELEAWAAENVCSPAARPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTTFLCNPGPNSSYKEYLDEEKNSALKNWALKNATFVTLEGPLYSSTNQSTAQASQEGDQTSTS

NCBI Accession NP_783157.1
Location 2164-2460
Gene Name AC 4
Protein Name transcriptional regulator protein
Coding Region ATGATGGGACTCCTCACTTGCATGTGCTCATCCAGTTCGAAGGAAAGTTCCAATGCAAAAACAATAGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCAAGCGATGTCAAATCCTACATGGAAAAAGACGGAGACGTCATTGATCATGGAGTTTTCCAAGTCGATGGACGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTCAGGCCCTCAATATATTAA
Protein Sequence MMGLLTCMCSSSSKESSNAKTIDSSTSHPQPGQHISIRTFRELRAQAMSNPTWKKTETSLIMEFSKSMDDQLEEVANLPTTHMPRQSIQGPKLRPSIY

References More References in PubMed

1

Silencing of tomato CTR1 provides enhanced tolerance against Tomato leaf curl virus infection.

Chandan RK, et al.  Plant Signal Behav. 2019;14(3):e1565595. doi: 10.1080/15592324.2019.1565595. Epub 2019 Jan 19.

PMID: 30661468

2

Association of tomato leaf curl Gujarat virus and tomato leaf curl Bangladesh betasatellite on papaya showing typical leaf curl symptoms in North India.

Varun P, et al.  3 Biotech. 2018 May;8(5):243. doi: 10.1007/s13205-018-1254-7. Epub 2018 May 8.

PMID: 29744275

3

Differential pathogenicity among Tomato leaf curl Gujarat virus isolates from India.

Ranjan P, et al.  Virus Genes. 2013 Dec;47(3):524-31. doi: 10.1007/s11262-013-0977-0. Epub 2013 Sep 12.

PMID: 24026875

4

Differential expression of genes during recovery of Nicotiana tabacum from tomato leaf curl Gujarat virus infection.

Namgial T, et al.  Planta. 2023 Jul 5;258(2):37. doi: 10.1007/s00425-023-04182-4.

PMID: 37405593

5

Diverse begomovirus-betasatellite complexes cause tomato leaf curl disease in the western India.

Sangeeta, et al.  Virus Res. 2023 Apr 15;328:199079. doi: 10.1016/j.virusres.2023.199079. Epub 2023 Mar 3.

PMID: 36813240

6

First Report of Tomato leaf curl New Delhi virus Infecting Tomato in Bangladesh.

Maruthi MN, et al.  Plant Dis. 2005 Sep;89(9):1011. doi: 10.1094/PD-89-1011C.

PMID: 30786642

7

A Distinct Strain of Tomato leaf curl Sudan virus Causes Tomato Leaf Curl Disease in Oman.

Khan AJ, et al.  Plant Dis. 2013 Nov;97(11):1396-1402. doi: 10.1094/PDIS-02-13-0210-RE.

PMID: 30708466

8

Tomato leaf curl Gujarat virus, a New Begomovirus Species Causing a Severe Leaf Curl Disease of Tomato in Varanasi, India.

Chakraborty S, et al.  Phytopathology. 2003 Dec;93(12):1485-95. doi: 10.1094/PHYTO.2003.93.12.1485.

PMID: 18943612

9

Predominance of tomato leaf curl Gujarat virus as a monopartite begomovirus: association with tomato yellow leaf curl Thailand betasatellite.

Jyothsna P, et al.  Arch Virol. 2013 Jan;158(1):217-24. doi: 10.1007/s00705-012-1468-7. Epub 2012 Sep 15.

PMID: 22983111

10

Two distinct monopartite begomovirus-betasatellite complexes in western India cause tomato leaf curl disease.

Sangeeta, et al.  Virus Res. 2021 Apr 2;295:198319. doi: 10.1016/j.virusres.2021.198319. Epub 2021 Jan 26.

PMID: 33508355