Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000841205.1 |
Isolate | India: Uttar Pradesh, Varanasi |
Release date | 2015/2/12 |
Submitter | Chakraborty,S., Pandey,P.K., Banerjee,M.K., Kalloo,G., Fauquet,C.M. |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | NP_783152.1 |
---|---|
Location | 150-497 |
Gene Name | AV 2 |
Protein Name | pre-coat protein |
Coding Region | ATGTGGGATCCTTTGTTAAACGAGTTTCCTGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTTCAATTAGTAGAAAAGACTTATTCTCCTGACACAGTCGGTTACGATTTAATCAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATGCTCATTTTCACGCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATCGGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAGGCATGGGCCAACCGGCCCATGTATCGGAAGCCCAGAATCTACAGAATGTACAGGAGCCCTGA |
Protein Sequence | MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTVGYDLIRDLISVIRARNYVEATSRYAHFHARFEGTSPSQLRQPIGEPCCCPHCPRHQSKGMGQPAHVSEAQNLQNVQEP |
NCBI Accession | NP_783153.1 |
---|---|
Location | 310-1080 |
Gene Name | AV 1 |
Protein Name | coat protein |
Coding Region | ATGTCGAAGCGACCAGCAGATATGCTCATTTTCACGCCCGCTTCGAAGGTACGTCGCCGTCTCAACTTCGACAGCCCATCGGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAGGCATGGGCCAACCGGCCCATGTATCGGAAGCCCAGAATCTACAGAATGTACAGGAGCCCTGATGTGCCTAAGGGCTGTGAGGGTCCGTGTAAGGTCCAATCGTTTGATGCTAAGAACGATATTGGTCACATGGGTAAGGTGATCTGTTTGTCCGATGTGACGAGGGGAATTGGGCTGACCCATCGAGTGGGTAAACGTTTTTGCGTTAAGTCTTTGTATTTCGTCGGCAAGATCTGGATGGACGAGAATATTAAGGTGAAGAACCACACCAACACCGTTATGTTTTGGATAGTACGTGATAGGCGTCCTAGTGGGACTCCCAATGATTTTCAGCAGGTTTTTAACGTATATGATAATGAGCCCTCTACTGCGACTGTTAAGAATGACCAGCGTGATCGCTTTCAAGTCTTACGGAGGTTTCAAGCGACTGTTACTGGAGGACAATATGCAGCCAAGGAGCAGGCGATAATTAGAAGATTTTTTCGTGTTAATAATTACGTAGTTTATAATCACCAGGAAGCTGGGAAGTACGAAAATCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCGACTCTCAAAGTGAGGAGTTATTTCTATGACTCAGTCACAAACTAA |
Protein Sequence | MSKRPADMLIFTPASKVRRRLNFDSPSVSRAAAPIVRVTKAKAWANRPMYRKPRIYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHRVGKRFCVKSLYFVGKIWMDENIKVKNHTNTVMFWIVRDRRPSGTPNDFQQVFNVYDNEPSTATVKNDQRDRFQVLRRFQATVTGGQYAAKEQAIIRRFFRVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKVRSYFYDSVTN |
NCBI Accession | NP_783154.1 |
---|---|
Location | 1077-1481 |
Gene Name | AC 3 |
Protein Name | replicational enhancer protein |
Coding Region | ATGGATTCACGCACAGGGGAATTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTATATTTCAAGATAACAGAGCACCAAAACCGGCCCTTCCTGATGAACGAAGACATCATCACCGTCCAGATACAGTTCAATCACAACCTGAGGAAAGTGTTGGGGATACACAAATGTTTCCTAACCTACCGATGCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTATTTAAAACACAAGTGATGAAATTTCTTAATAATTTGGGTGTAATTAGTTTGAATAATGTAATTAGAGCAGTGAATTATGTACTATGGGATGCATTGACGCAAACAACATTTGTAGACAGTTCAAATATAATAAAATTTAATATTTATTAG |
Protein Sequence | MDSRTGEFITAAQAENGVFIWEIQNPLYFKITEHQNRPFLMNEDIITVQIQFNHNLRKVLGIHKCFLTYRCWMTSQPPTGRFLRVFKTQVMKFLNNLGVISLNNVIRAVNYVLWDALTQTTFVDSSNIIKFNIY |
NCBI Accession | NP_783155.1 |
---|---|
Location | 1222-1626 |
Gene Name | AC 2 |
Protein Name | transcriptional activator protein |
Coding Region | ATGCAACCTTCGTCACCCTCGAAGGCCCACTCTACTCAAGTACCAATCAAAGTACAGCACAGGCTAGCCAAGAAGGGGACCAGACGTCGACGAGTTGATCTACCGTGTGGCTGTTCTTACTTCATAGCATTAACCTGCAACGACCATGGATTCACGCACAGGGGAATTCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATTCAAAATCCCCTATATTTCAAGATAACAGAGCACCAAAACCGGCCCTTCCTGATGAACGAAGACATCATCACCGTCCAGATACAGTTCAATCACAACCTGAGGAAAGTGTTGGGGATACACAAATGTTTCCTAACCTACCGATGCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTATTTAA |
Protein Sequence | MQPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALTCNDHGFTHRGIHHCSSSREWRVYLGDSKSPIFQDNRAPKPALPDERRHHHRPDTVQSQPEESVGDTQMFPNLPMLDDLTASDWSFLKGI |
NCBI Accession | NP_783156.1 |
---|---|
Location | 1529-2614 |
Gene Name | AC 1 |
Protein Name | replicase |
Coding Region | ATGGCAGCCCCCAATCGCTTTAAAATAAATGCCAAAAATTATTTTCTCACTTATCCCAAGTGCTCTCTAACTAAAGAAGAGGCACTTTCCCAATTATTAAATCTCCAAACACCCACTTTCAAAAAATTTATTAGAATTTGCAGAGAGCTTCACGATGATGGGACTCCTCACTTGCATGTGCTCATCCAGTTCGAAGGAAAGTTCCAATGCAAAAACAATAGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCAAGCGATGTCAAATCCTACATGGAAAAAGACGGAGACGTCATTGATCATGGAGTTTTCCAAGTCGATGGACGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTCAGGCCCTCAATATATTAAGGGAGAAAGCTCCCAAAGATTTTGTTTTACAATTTCACAATTTAAATTCTAATTTAGATAGGATTTTTACACCTCCAATGGATGTTTATGTTTCACCTTTTATATCTTCTTCTTTCGACCAAGTTCCAGAAGAACTTGAAGCGTGGGCTGCCGAGAACGTCTGCAGTCCCGCTGCGCGGCCTCTGAGACCCATAAGTATAGTAATTGAGGGTGACAGTAGGACGGGGAAGACTATGTGGGCCAGATCATTGGGACCACATAATTATTTGTGTGGTCATCTAGACCTTAGCCCAAAGGTTTACAGTAATGATGCCTGGTACAACGTCATTGATGACGTCGACCCCCACTACCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAGTACGGGAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTACCTTCCTCTGCAATCCAGGACCCAACTCCAGCTATAAAGAATACTTGGATGAGGAAAAGAATTCTGCACTAAAAAACTGGGCTTTAAAAAATGCAACCTTCGTCACCCTCGAAGGCCCACTCTACTCAAGTACCAATCAAAGTACAGCACAGGCTAGCCAAGAAGGGGACCAGACGTCGACGAGTTGA |
Protein Sequence | MAAPNRFKINAKNYFLTYPKCSLTKEEALSQLLNLQTPTFKKFIRICRELHDDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKSYMEKDGDVIDHGVFQVDGRSARGGCQSANDAYAEAINSGSKAQALNILREKAPKDFVLQFHNLNSNLDRIFTPPMDVYVSPFISSSFDQVPEELEAWAAENVCSPAARPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTTFLCNPGPNSSYKEYLDEEKNSALKNWALKNATFVTLEGPLYSSTNQSTAQASQEGDQTSTS |
NCBI Accession | NP_783157.1 |
---|---|
Location | 2164-2460 |
Gene Name | AC 4 |
Protein Name | transcriptional regulator protein |
Coding Region | ATGATGGGACTCCTCACTTGCATGTGCTCATCCAGTTCGAAGGAAAGTTCCAATGCAAAAACAATAGATTCTTCGACCTCACATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCAAGCGATGTCAAATCCTACATGGAAAAAGACGGAGACGTCATTGATCATGGAGTTTTCCAAGTCGATGGACGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTCAGGCCCTCAATATATTAA |
Protein Sequence | MMGLLTCMCSSSSKESSNAKTIDSSTSHPQPGQHISIRTFRELRAQAMSNPTWKKTETSLIMEFSKSMDDQLEEVANLPTTHMPRQSIQGPKLRPSIY |
1 |
Silencing of tomato CTR1 provides enhanced tolerance against Tomato leaf curl virus infection. Chandan RK, et al. Plant Signal Behav. 2019;14(3):e1565595. doi: 10.1080/15592324.2019.1565595. Epub 2019 Jan 19. PMID: 30661468 |
---|---|
2 |
Varun P, et al. 3 Biotech. 2018 May;8(5):243. doi: 10.1007/s13205-018-1254-7. Epub 2018 May 8. PMID: 29744275 |
3 |
Differential pathogenicity among Tomato leaf curl Gujarat virus isolates from India. Ranjan P, et al. Virus Genes. 2013 Dec;47(3):524-31. doi: 10.1007/s11262-013-0977-0. Epub 2013 Sep 12. PMID: 24026875 |
4 |
Namgial T, et al. Planta. 2023 Jul 5;258(2):37. doi: 10.1007/s00425-023-04182-4. PMID: 37405593 |
5 |
Diverse begomovirus-betasatellite complexes cause tomato leaf curl disease in the western India. Sangeeta, et al. Virus Res. 2023 Apr 15;328:199079. doi: 10.1016/j.virusres.2023.199079. Epub 2023 Mar 3. PMID: 36813240 |
6 |
First Report of Tomato leaf curl New Delhi virus Infecting Tomato in Bangladesh. Maruthi MN, et al. Plant Dis. 2005 Sep;89(9):1011. doi: 10.1094/PD-89-1011C. PMID: 30786642 |
7 |
A Distinct Strain of Tomato leaf curl Sudan virus Causes Tomato Leaf Curl Disease in Oman. Khan AJ, et al. Plant Dis. 2013 Nov;97(11):1396-1402. doi: 10.1094/PDIS-02-13-0210-RE. PMID: 30708466 |
8 |
Chakraborty S, et al. Phytopathology. 2003 Dec;93(12):1485-95. doi: 10.1094/PHYTO.2003.93.12.1485. PMID: 18943612 |
9 |
Jyothsna P, et al. Arch Virol. 2013 Jan;158(1):217-24. doi: 10.1007/s00705-012-1468-7. Epub 2012 Sep 15. PMID: 22983111 |
10 |
Sangeeta, et al. Virus Res. 2021 Apr 2;295:198319. doi: 10.1016/j.virusres.2021.198319. Epub 2021 Jan 26. PMID: 33508355 |