Tomato leaf curl Guangxi virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000868445.1 |
| Isolate |
China:Guangxi |
| Release date |
2015/2/13 |
| Submitter |
Xu,Y.P., Cai,X.Z., Zhou,X.P. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCAAAGTGTTAAAGTGGTCCCCCCTCCACTAACTGACAAAGACATGTCGGCCAATAAAAACGCTCCCTCAAAGTTAAATTAGTGGTGGTCCCTCTATTTAAACTTCCTTAGCAAGTAGTTCATTCCGCACTATGTGGGATCCATTGCTTAATGAGTTTCCTGAAACCGTTCACGGTTTTAGGTGCATGTTAGCAATTAAGTATTTGCAGTTAGTAGAAAATACATACTCTCCGGATACGTTAGGGTACGATTTAATTCGTGATTTAATTTTAGTTGTTCGTGCTCGAGATTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGTCGGTTGAATTTCGACAGCCCTTATACCAGCCGTGCTGCTGCCACCACTGTCCTCGTCACAAACAAAAGGAAATCATGGGTCAATCGGCCCATGTATCGAAAGCCCAGGATGTACAGGATGTTCAGAAGCCCTGATGTTCCACGAGCCTGTGAAGGGCCTTGCAAAGTCCAATCTTTCGATGCAAAGAATGATATCGGTCACATGGGTAAGGTCATATGTCTGTCTGGTGTTACTAGGGGAGTGGGTTTGACCCATCGTGTTGGTAAACGTTTCTGTGTTAAGTCACTGTATTTTGTTGGCAAGATTTGGATGGATGAAAACATCAAGGTGAAGAACCACACTAACACCGTTATGTTCTGGATAGTGAGGGATAGACGTCCTAGTGGAACTCCTAATGATTTTCAGCAGGTGTTTAATGTTTACGATAATGAACCTTCTACGGCTACCGTCAAGAACGACCATCGTGATCGTTTCCAGGTGTTGAGGAGGTTCCAGGCAACAGTTACTGGTGGACAGTATGCAGCTAAGGAGCAGGCGATAATTAGGAAGTTTTATCGTGTTAATAATCATGTTGTGTACAATCACCAAGAAGCTGGGAAGTACGAGAATCACACTGAGAATGCTCTTTTGTTGTACATGGCATGTACTCATGCCTCTAATCCCGTGTATGCTACTTTGAAAGTAAGGAGTTATTTCTATGACTCCGTTACGAATTAATAAATATTGAATTTTATTATATGAGAATGTGTTACATATTCTGTTTTTTCCAATACATCCCATAATACATGATTACATGCTCTAATTACATTGTTAATACTAATTACACTCAAATTATCTAAATATTTCATACATTGAACCCTAAATACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAACGAGTCCAGATCTGGAAGATCAGAAAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTTATGATGTCGTGGTTGGTGTTGAATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATATAGGGGATTTTTGATCGTCCAGGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCATGATTTGCACAATCTATGCCGAAGTAGTATGAGCACCCGCACGTTAGATCAACTCTCCGTCTCCGAATGGGCTTCCTCTTGGCTATTCTGTGTTGCACTTTGATTGGTACCTGAGTACAATGGGCTGTTGAGGGTGATGAATTCTGCATTCTTTAATGCCCAATCTTTTAATGCTGAATTTTTATCCTCATTCAAGTACTCTTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATACTTGGGATTCCACCTTTAATTTGAACTGGCTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCTACGTCATCAATGACGTTATACCAAGCATCATTACTGTATACTTTTGGGCTTAGATCAAGATGTCCACACAAATAATTGTGTGGTCCCAGTGATCTGGCCCACATTGTTTTACCTGTACGACTATCACCTTCTATCACAATACTTTTGGGTCTCCAAGGCCGCGCAGCGGCACCACTCACATTCTCAGAAACCCACTCTTCAAGTTCTTCTGGAACTTGATCGAATGAAGAAGAAAGAAATGGACAAACAAAAACCTCTAAAGGAGGTGCAAAAATCCTATCTAAGTTAGAGTTTAAATTATGAAATTGTAAAACATAATCTTTAGGAGCTAACTCCTTAATTACTCTAAGAGCCTCAGCCTTACTGCCGCTGTTAATTGCCTGGGCGTAAGCATCATTGGCTGATTGTTGACCCCCTCTTGCAGATCGTCCGTCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGACCAGGTCGAAGAATCTGTTATTTTGGCATTTGTATTTGCCTTCGAATTGGATAAGCACGTGGAGATGAGGGCTCCCATCTTCATGAAGTTCGCTGCAGATTTTGATGTATTTTTTATTTGTTGGGGTGTTTAGGTTTTTTATTTGGGAAAGTGCCTCTTCTTTAGTAAGAGAGCATTGTGGATAAGTGAGGAAAAAGTTTTTGGCATATATTTGAAAACGCTTAGGAGGAGCCATTGACTTGGTCAATCGGTACTCAACAAACTTGGCTATGCAATCGGTGATTGGTACTCAATATATAGTGAGTACCAAATGGCATGATTGTAATTTCTTAAAGAAATTCAAATTGTAAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_740293.1
|
|
Location
|
145-495 |
|
Gene Name
|
AV2 |
|
Protein Name
|
AV2 protein |
|
Coding Region
|
ATGTGGGATCCATTGCTTAATGAGTTTCCTGAAACCGTTCACGGTTTTAGGTGCATGTTAGCAATTAAGTATTTGCAGTTAGTAGAAAATACATACTCTCCGGATACGTTAGGGTACGATTTAATTCGTGATTTAATTTTAGTTGTTCGTGCTCGAGATTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGTCGGTTGAATTTCGACAGCCCTTATACCAGCCGTGCTGCTGCCACCACTGTCCTCGTCACAAACAAAAGGAAATCATGGGTCAATCGGCCCATGTATCGAAAGCCCAGGATGTACAGGATGTTCAGAAGCCCTGA |
|
Protein Sequence
|
MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLILVVRARDYVEASRRYSHFHSRIQGASSVEFRQPLYQPCCCHHCPRHKQKEIMGQSAHVSKAQDVQDVQKP |
|
NCBI Accession
|
YP_740294.1
|
|
Location
|
305-1078 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGTCGGTTGAATTTCGACAGCCCTTATACCAGCCGTGCTGCTGCCACCACTGTCCTCGTCACAAACAAAAGGAAATCATGGGTCAATCGGCCCATGTATCGAAAGCCCAGGATGTACAGGATGTTCAGAAGCCCTGATGTTCCACGAGCCTGTGAAGGGCCTTGCAAAGTCCAATCTTTCGATGCAAAGAATGATATCGGTCACATGGGTAAGGTCATATGTCTGTCTGGTGTTACTAGGGGAGTGGGTTTGACCCATCGTGTTGGTAAACGTTTCTGTGTTAAGTCACTGTATTTTGTTGGCAAGATTTGGATGGATGAAAACATCAAGGTGAAGAACCACACTAACACCGTTATGTTCTGGATAGTGAGGGATAGACGTCCTAGTGGAACTCCTAATGATTTTCAGCAGGTGTTTAATGTTTACGATAATGAACCTTCTACGGCTACCGTCAAGAACGACCATCGTGATCGTTTCCAGGTGTTGAGGAGGTTCCAGGCAACAGTTACTGGTGGACAGTATGCAGCTAAGGAGCAGGCGATAATTAGGAAGTTTTATCGTGTTAATAATCATGTTGTGTACAATCACCAAGAAGCTGGGAAGTACGAGAATCACACTGAGAATGCTCTTTTGTTGTACATGGCATGTACTCATGCCTCTAATCCCGTGTATGCTACTTTGAAAGTAAGGAGTTATTTCTATGACTCCGTTACGAATTAA |
|
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDSPYTSRAAATTVLVTNKRKSWVNRPMYRKPRMYRMFRSPDVPRACEGPCKVQSFDAKNDIGHMGKVICLSGVTRGVGLTHRVGKRFCVKSLYFVGKIWMDENIKVKNHTNTVMFWIVRDRRPSGTPNDFQQVFNVYDNEPSTATVKNDHRDRFQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKVRSYFYDSVTN |
|
NCBI Accession
|
YP_740295.1
|
|
Location
|
1075-1479 |
|
Gene Name
|
AC3 |
|
Protein Name
|
AC3 protein |
|
Coding Region
|
ATGGATTTTCGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAGTGGCGTGTATACCTGGACGATCAAAAATCCCCTATATTTCAAGATAACCAAGCACCACGAGAGACCATTCAACACCAACCACGACATCATAACGATCCAAATACAATTCAACCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTGATCTTCCAGATCTGGACTCGTTTACAACCTCAGACTTGGCGTTTCTTAAGAGTATTTAGGGTTCAATGTATGAAATATTTAGATAATTTGAGTGTAATTAGTATTAACAATGTAATTAGAGCATGTAATCATGTATTATGGGATGTATTGGAAAAAACAGAATATGTAACACATTCTCATATAATAAAATTCAATATTTATTAA |
|
Protein Sequence
|
MDFRTGELLTATQCESGVYTWTIKNPLYFKITKHHERPFNTNHDIITIQIQFNHNLRKALGIHQCFLIFQIWTRLQPQTWRFLRVFRVQCMKYLDNLSVISINNVIRACNHVLWDVLEKTEYVTHSHIIKFNIY |
|
NCBI Accession
|
YP_740296.1
|
|
Location
|
1220-1627 |
|
Gene Name
|
AC2 |
|
Protein Name
|
AC2 protein |
|
Coding Region
|
ATGCAGAATTCATCACCCTCAACAGCCCATTGTACTCAGGTACCAATCAAAGTGCAACACAGAATAGCCAAGAGGAAGCCCATTCGGAGACGGAGAGTTGATCTAACGTGCGGGTGCTCATACTACTTCGGCATAGATTGTGCAAATCATGGATTTTCGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAGTGGCGTGTATACCTGGACGATCAAAAATCCCCTATATTTCAAGATAACCAAGCACCACGAGAGACCATTCAACACCAACCACGACATCATAACGATCCAAATACAATTCAACCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTGATCTTCCAGATCTGGACTCGTTTACAACCTCAGACTTGGCGTTTCTTAAGAGTATTTAG |
|
Protein Sequence
|
MQNSSPSTAHCTQVPIKVQHRIAKRKPIRRRRVDLTCGCSYYFGIDCANHGFSHRGITHCNSMREWRVYLDDQKSPIFQDNQAPRETIQHQPRHHNDPNTIQPQPEESVGNTPVFSDLPDLDSFTTSDLAFLKSI |
|
NCBI Accession
|
YP_740297.1
|
|
Location
|
1527-2615 |
|
Gene Name
|
AC1 |
|
Protein Name
|
AC1 protein |
|
Coding Region
|
ATGGCTCCTCCTAAGCGTTTTCAAATATATGCCAAAAACTTTTTCCTCACTTATCCACAATGCTCTCTTACTAAAGAAGAGGCACTTTCCCAAATAAAAAACCTAAACACCCCAACAAATAAAAAATACATCAAAATCTGCAGCGAACTTCATGAAGATGGGAGCCCTCATCTCCACGTGCTTATCCAATTCGAAGGCAAATACAAATGCCAAAATAACAGATTCTTCGACCTGGTCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACCTGGAGAAGGACGGAGACACCCTCGACTGGGGAGAGTTTCAGATCGACGGACGATCTGCAAGAGGGGGTCAACAATCAGCCAATGATGCTTACGCCCAGGCAATTAACAGCGGCAGTAAGGCTGAGGCTCTTAGAGTAATTAAGGAGTTAGCTCCTAAAGATTATGTTTTACAATTTCATAATTTAAACTCTAACTTAGATAGGATTTTTGCACCTCCTTTAGAGGTTTTTGTTTGTCCATTTCTTTCTTCTTCATTCGATCAAGTTCCAGAAGAACTTGAAGAGTGGGTTTCTGAGAATGTGAGTGGTGCCGCTGCGCGGCCTTGGAGACCCAAAAGTATTGTGATAGAAGGTGATAGTCGTACAGGTAAAACAATGTGGGCCAGATCACTGGGACCACACAATTATTTGTGTGGACATCTTGATCTAAGCCCAAAAGTATACAGTAATGATGCTTGGTATAACGTCATTGATGACGTAGACCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACTAAGTACGGGAAGCCAGTTCAAATTAAAGGTGGAATCCCAAGTATCTTCCTTTGCAATCCAGGCCCAACATCATCATATAAAGAGTACTTGAATGAGGATAAAAATTCAGCATTAAAAGATTGGGCATTAAAGAATGCAGAATTCATCACCCTCAACAGCCCATTGTACTCAGGTACCAATCAAAGTGCAACACAGAATAGCCAAGAGGAAGCCCATTCGGAGACGGAGAGTTGA |
|
Protein Sequence
|
MAPPKRFQIYAKNFFLTYPQCSLTKEEALSQIKNLNTPTNKKYIKICSELHEDGSPHLHVLIQFEGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYLEKDGDTLDWGEFQIDGRSARGGQQSANDAYAQAINSGSKAEALRVIKELAPKDYVLQFHNLNSNLDRIFAPPLEVFVCPFLSSSFDQVPEELEEWVSENVSGAAARPWRPKSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPSIFLCNPGPTSSYKEYLNEDKNSALKDWALKNAEFITLNSPLYSGTNQSATQNSQEEAHSETES |
|
NCBI Accession
|
YP_740298.1
|
|
Location
|
2168-2464 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGAAGATGGGAGCCCTCATCTCCACGTGCTTATCCAATTCGAAGGCAAATACAAATGCCAAAATAACAGATTCTTCGACCTGGTCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACCTGGAGAAGGACGGAGACACCCTCGACTGGGGAGAGTTTCAGATCGACGGACGATCTGCAAGAGGGGGTCAACAATCAGCCAATGATGCTTACGCCCAGGCAATTAACAGCGGCAGTAAGGCTGAGGCTCTTAGAGTAA |
|
Protein Sequence
|
MKMGALISTCLSNSKANTNAKITDSSTWSPQPGQHISIRTFRELNPAPTSSPTWRRTETPSTGESFRSTDDLQEGVNNQPMMLTPRQLTAAVRLRLLE |