Tomato leaf curl Guangdong virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000869445.1 |
| Isolate |
China: Guangdong, Guangzhou |
| Release date |
2015/2/13 |
| Submitter |
He,Z.F., Yu,H. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTTATGGTGGTCCCCCCCACTAAGTTTTGTCGGCCAATGAGAACGCTCTCTCAAATGTTAGTTAAATAGTTGTCCCTTATAAAACTTGGTCCCTAAGTACTCATTGTAAAGATGTGGGATCCTCTTTTAAACGAGTTTCCTGAAACCGTACATGGTTTTAGGTGTATGCTAGCGATTAAGTATTTACAGTTAGTAGAGAATACATACTCTCCGGATACGTTGGGGTACGATCTAATACGTGATTTAATATTGGTTATTCGTGCTAGGGATTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGTTGAATTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAATCGGCCCATGTACCGAAAGCCCAAGATGTACAGGATGTACAAAAGCCCTGATGTTCCTCGGGGTTGTGAAGGCCCATGTAAAGTCCAATCGTATGAACAGCGTCATGATGTAGTCCATGTAGGTAAGGTCATTTGTGTGTCTGATGTTACTCGTGGTAATGGGTTGACTCATCGTGTTGGGAAGAGGTTTTGTGTCAAGTCTGTGTATGTGTTAGGTAAAATATGGATGGATGAGAATATTAAGACTAAAAATCACACAAACACTGTGATGTTTTTTTTAGTTCGTGATAGAAGACCCTTCGGCACTCCCCAAGATTTCGGGCAGGTGTTTAACATGTATGATAACGAGCCAAGTACAGCAACTGTTAAGAACGATAACAGAGATCGTTTTCAAGTTCTTCGTCGATTTCAGGCGACTGTCACCGGTGGTCAGTATGCAAGTAAGGAGCAAGCAATAGTTAGGAAGTTTATGAAGGTCAATAATCATGTAACGTATAATCATCAAGAGGCTGCGAAGTATGATAACCATACTGAGAATGCTCTGTTATTGTATATGGCATGTACGCATGCTAGTAATCCAGTGTATGCTACCTTGAAAATCAGGATCTATTTCTATGATTCTGTACAAAATTAATAAAGATTGAATTTTATTATACTTGAGAATGTTGTTTCAATTGTCCCTTCTAATACATCATACAGTACATGTGAAATTGCTCTAATTACATTGTTGATACTAATCACTCCTAAATTCGCTAAATATTTCATACATTGATATTTAAATACTCTTAAGAAATGCGAGGTCTGAGGATGTAAAAGAGTCCAGATCCGGCAGGTTAGAAAACATTGGTGTATCCCCAGCGCTTTCCTCAGGTTGTAATTGAATTGGATTTGGACGGTTATGATGTCGTGGTTCCTCCGGAATGGTCTCTCTAGGTGTTGGGGTATCTTGAAATATAGGGGATTGTTGATTGTCCAGGTATATACGCCATTCTCTGCTTGAGCCGCAGTGATGAGTTCCCCTGTGCGTAAATCCATGTGATGCGCAATCAAGTCCAAAATAGTAAGAGCATCCACAAGGTAGATCAACTCTACGTCTGCGAACTGGTCTCCTCTTCGCTATTTTGTGTTGGACTTTGATTGGTACTTGAGTACAATGGCCCTGTGAGGGTGACGAATGTTGCATTTTTTAATGCCCAGTTTCTGAGTGCAGAATTCTTATCCTCGTCCAAGTACTCTTTATATGATGAAGTTGGTCCTGGATTGCATAGGAAGATTGTTGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTACTTCGTGTTGCTTTGCCAGTCTCGTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCTACGTCATCAATGACGTTGTACCAGGCATCATTAGAATACACCTTGGGACTCAAGTCCAGGTGACCACATAAATAGTTATGTGGACCCAAAGAACGAGCCCACATTGTCTTGCCGGTTCTACTCTCGCCCTCGATTACAATACTATTGGGCCTAAAAGGCCGCGCAGCGGCACCCATTACATTTTCTGCAGCCCATTCTTCGAGTTCTTCCGGAACGAGATCAAAAGAAGAAGAAAGAAAAGGAGATACAAAAATCTCTAAAGGAGGTGCAAAAATCCTATCTAAATTACTATTTAAATTATGAAATTGAAAAATATAATCTTTTGGGAGTTTCTCCCTTATTATCGCTAAGGCAGCGTCTTTGGAACCTGCATTTAAAGCCTCTGCACATGCGTCGTTAGCATTCTGGCAGCCTCCCCTAGCACTTCGTCCGTCGACCTGGAATTGACCCCATTCAATGATGTCTCCATCCTTATGGATGTAGGACTTGACATCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGATCTGGTTGGGGAAACCAGGTCGAAGAATCTGTTATTCGTGCAGTTGTATTTGCCTTCGAATTGCATAAGCACGTGGAGATGAGGGTTCCCATTCTTGTGTAATTCTCTGCAAATTTTTATGAATTTTATATTGGTAGGGGTTTGCAGGTTTTGTAACTGGGAAAGTGCTTCCTCTTTGGTGAGAGAGCACTGTGGGTATGTTAAGAAATAATTTTTGGCTTTAATAGAAAAACGTCCCGCACGAGGCATTTTGGAATTGGGGGGCACTCAAAGTCTGAGCAATCGGGGGAACTGGGGGGCAATTTATATGGTGCCCCCCAAATGGCATAATCGTAAATATGCATAAGAAATCCAAAATTCAAATTGGTAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_764443.1
|
|
Location
|
132-482 |
|
Gene Name
|
AV2 |
|
Protein Name
|
AV2 protein |
|
Coding Region
|
ATGTGGGATCCTCTTTTAAACGAGTTTCCTGAAACCGTACATGGTTTTAGGTGTATGCTAGCGATTAAGTATTTACAGTTAGTAGAGAATACATACTCTCCGGATACGTTGGGGTACGATCTAATACGTGATTTAATATTGGTTATTCGTGCTAGGGATTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGTTGAATTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAATCGGCCCATGTACCGAAAGCCCAAGATGTACAGGATGTACAAAAGCCCTGA |
|
Protein Sequence
|
MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLILVIRARDYVEASRRYSHFHSRIQGASPVEFRQPICQPCCCPHCPRHKQKEVMGESAHVPKAQDVQDVQKP |
|
NCBI Accession
|
YP_764444.1
|
|
Location
|
292-1065 |
|
Gene Name
|
AV1 |
|
Protein Name
|
capsid protein |
|
Coding Region
|
ATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGTTGAATTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAATCGGCCCATGTACCGAAAGCCCAAGATGTACAGGATGTACAAAAGCCCTGATGTTCCTCGGGGTTGTGAAGGCCCATGTAAAGTCCAATCGTATGAACAGCGTCATGATGTAGTCCATGTAGGTAAGGTCATTTGTGTGTCTGATGTTACTCGTGGTAATGGGTTGACTCATCGTGTTGGGAAGAGGTTTTGTGTCAAGTCTGTGTATGTGTTAGGTAAAATATGGATGGATGAGAATATTAAGACTAAAAATCACACAAACACTGTGATGTTTTTTTTAGTTCGTGATAGAAGACCCTTCGGCACTCCCCAAGATTTCGGGCAGGTGTTTAACATGTATGATAACGAGCCAAGTACAGCAACTGTTAAGAACGATAACAGAGATCGTTTTCAAGTTCTTCGTCGATTTCAGGCGACTGTCACCGGTGGTCAGTATGCAAGTAAGGAGCAAGCAATAGTTAGGAAGTTTATGAAGGTCAATAATCATGTAACGTATAATCATCAAGAGGCTGCGAAGTATGATAACCATACTGAGAATGCTCTGTTATTGTATATGGCATGTACGCATGCTAGTAATCCAGTGTATGCTACCTTGAAAATCAGGATCTATTTCTATGATTCTGTACAAAATTAA |
|
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDSPYVSRAAAPTVLVTNKRRSWVNRPMYRKPKMYRMYKSPDVPRGCEGPCKVQSYEQRHDVVHVGKVICVSDVTRGNGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNEPSTATVKNDNRDRFQVLRRFQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
|
NCBI Accession
|
YP_764445.1
|
|
Location
|
1062-1466 |
|
Gene Name
|
AC3 |
|
Protein Name
|
AC3 protein |
|
Coding Region
|
ATGGATTTACGCACAGGGGAACTCATCACTGCGGCTCAAGCAGAGAATGGCGTATATACCTGGACAATCAACAATCCCCTATATTTCAAGATACCCCAACACCTAGAGAGACCATTCCGGAGGAACCACGACATCATAACCGTCCAAATCCAATTCAATTACAACCTGAGGAAAGCGCTGGGGATACACCAATGTTTTCTAACCTGCCGGATCTGGACTCTTTTACATCCTCAGACCTCGCATTTCTTAAGAGTATTTAAATATCAATGTATGAAATATTTAGCGAATTTAGGAGTGATTAGTATCAACAATGTAATTAGAGCAATTTCACATGTACTGTATGATGTATTAGAAGGGACAATTGAAACAACATTCTCAAGTATAATAAAATTCAATCTTTATTAA |
|
Protein Sequence
|
MDLRTGELITAAQAENGVYTWTINNPLYFKIPQHLERPFRRNHDIITVQIQFNYNLRKALGIHQCFLTCRIWTLLHPQTSHFLRVFKYQCMKYLANLGVISINNVIRAISHVLYDVLEGTIETTFSSIIKFNLY |
|
NCBI Accession
|
YP_764446.1
|
|
Location
|
1207-1614 |
|
Gene Name
|
AC2 |
|
Protein Name
|
AC2 protein |
|
Coding Region
|
ATGCAACATTCGTCACCCTCACAGGGCCATTGTACTCAAGTACCAATCAAAGTCCAACACAAAATAGCGAAGAGGAGACCAGTTCGCAGACGTAGAGTTGATCTACCTTGTGGATGCTCTTACTATTTTGGACTTGATTGCGCATCACATGGATTTACGCACAGGGGAACTCATCACTGCGGCTCAAGCAGAGAATGGCGTATATACCTGGACAATCAACAATCCCCTATATTTCAAGATACCCCAACACCTAGAGAGACCATTCCGGAGGAACCACGACATCATAACCGTCCAAATCCAATTCAATTACAACCTGAGGAAAGCGCTGGGGATACACCAATGTTTTCTAACCTGCCGGATCTGGACTCTTTTACATCCTCAGACCTCGCATTTCTTAAGAGTATTTAA |
|
Protein Sequence
|
MQHSSPSQGHCTQVPIKVQHKIAKRRPVRRRRVDLPCGCSYYFGLDCASHGFTHRGTHHCGSSREWRIYLDNQQSPIFQDTPTPRETIPEEPRHHNRPNPIQLQPEESAGDTPMFSNLPDLDSFTSSDLAFLKSI |
|
NCBI Accession
|
YP_764447.1
|
|
Location
|
1520-2602 |
|
Gene Name
|
AC1 |
|
Protein Name
|
AC1 protein |
|
Coding Region
|
ATGCCTCGTGCGGGACGTTTTTCTATTAAAGCCAAAAATTATTTCTTAACATACCCACAGTGCTCTCTCACCAAAGAGGAAGCACTTTCCCAGTTACAAAACCTGCAAACCCCTACCAATATAAAATTCATAAAAATTTGCAGAGAATTACACAAGAATGGGAACCCTCATCTCCACGTGCTTATGCAATTCGAAGGCAAATACAACTGCACGAATAACAGATTCTTCGACCTGGTTTCCCCAACCAGATCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTACATCCATAAGGATGGAGACATCATTGAATGGGGTCAATTCCAGGTCGACGGACGAAGTGCTAGGGGAGGCTGCCAGAATGCTAACGACGCATGTGCAGAGGCTTTAAATGCAGGTTCCAAAGACGCTGCCTTAGCGATAATAAGGGAGAAACTCCCAAAAGATTATATTTTTCAATTTCATAATTTAAATAGTAATTTAGATAGGATTTTTGCACCTCCTTTAGAGATTTTTGTATCTCCTTTTCTTTCTTCTTCTTTTGATCTCGTTCCGGAAGAACTCGAAGAATGGGCTGCAGAAAATGTAATGGGTGCCGCTGCGCGGCCTTTTAGGCCCAATAGTATTGTAATCGAGGGCGAGAGTAGAACCGGCAAGACAATGTGGGCTCGTTCTTTGGGTCCACATAACTATTTATGTGGTCACCTGGACTTGAGTCCCAAGGTGTATTCTAATGATGCCTGGTACAACGTCATTGATGACGTAGATCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAACGAGACTGGCAAAGCAACACGAAGTACGGGAAACCAATTCAAATTAAAGGAGGTATCCCAACAATCTTCCTATGCAATCCAGGACCAACTTCATCATATAAAGAGTACTTGGACGAGGATAAGAATTCTGCACTCAGAAACTGGGCATTAAAAAATGCAACATTCGTCACCCTCACAGGGCCATTGTACTCAAGTACCAATCAAAGTCCAACACAAAATAGCGAAGAGGAGACCAGTTCGCAGACGTAG |
|
Protein Sequence
|
MPRAGRFSIKAKNYFLTYPQCSLTKEEALSQLQNLQTPTNIKFIKICRELHKNGNPHLHVLMQFEGKYNCTNNRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYIHKDGDIIEWGQFQVDGRSARGGCQNANDACAEALNAGSKDAALAIIREKLPKDYIFQFHNLNSNLDRIFAPPLEIFVSPFLSSSFDLVPEELEEWAAENVMGAAARPFRPNSIVIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNSALRNWALKNATFVTLTGPLYSSTNQSPTQNSEEETSSQT |
|
NCBI Accession
|
YP_764448.1
|
|
Location
|
2188-2445 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGAACCCTCATCTCCACGTGCTTATGCAATTCGAAGGCAAATACAACTGCACGAATAACAGATTCTTCGACCTGGTTTCCCCAACCAGATCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTACATCCATAAGGATGGAGACATCATTGAATGGGGTCAATTCCAGGTCGACGGACGAAGTGCTAGGGGAGGCTGCCAGAATGCTAACGACGCATGTGCAGAGGCTTTAA |
|
Protein Sequence
|
MGTLISTCLCNSKANTTARITDSSTWFPQPDQHISIRTFRELNPAPMSSPTSIRMETSLNGVNSRSTDEVLGEAARMLTTHVQRL |