Tomato leaf curl Comoros virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_001430535.1 |
| Isolate |
Mayotte:Dembeni |
| Release date |
2015/11/3 |
| Submitter |
Delatte,H., Martin,D.P., Naze,F., Goldbach,R., Reynaud,B., Peterschmitt,M., Lett,J.M. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCCCGAAAAAAGAAGGTGGTCCCCGCGCACTATCTTTTGTCATCCAATAAGAATCGCGCGTCAAAGCTTAGATAAGCGTTTTTGTCCTTATAAACTTGCTCGCCAAGTAGTTGTCTCACAAAATGTGGGATCCACTCTTGAACGAGTTCCCAGACTCTGTTCACGGTTTTCGTTGTATGCTAGCTATCAAATATTTGCAGGCCATTGAGCAAACCTATGAGCCCAACACTTTGGGCCACGAATTGATCCGTGATCTCATCTCCGTCGTTAGAGCTCGTGATTATGTCGAAGCGACCCGCCGATATAATCATTTCCACGCCCGCCTCGAAGGTGCGTCGGAGACTGAACTTCGACAGCCCTTATACCAGCCGTGCTGTTGTCCCCATTGTCCCAGGCACAAGCAGACGTCGGTCATGGACGTACAGGCCCATGTATCGAAAGCCCAGGACGTACAGAATGTACAGAAGCCCTGACGTTCCAAAGGGTTGTGAAGGCCCATGTAAGGTCCAGTCTTATGAGCAGAGGGATGATGTTAAGCATACTGGTATTGTTCGTTGTGTTAGTGATGTTACGCGTGGTCCGGGAATTACTCATAGGGTTGGCAAGAGGTTCTGTGTTAAGTCCATTTACATTTTAGGGAAAATATGGATGGATGAAAATATCAAGAAGCAGAATCACACTAATCAGGTTATGTTTTTTTTAGTTCGTGATAGAAGGCCTTACGGTGCAGCCCCAATGGATTTTGGGCAGGTGTTTAACATGTTTGATAACGAGCCCAGTACAGCTACGGTGAAGAATGATTTGAGAGACAGGTACCAGGTTTTGCGGAAGTTTCATGCAACTGTTGTAGGTGGTCCCTCTGGGATGAAGGAACAGGCGTTAGTTAAGAGGTTTTTTAGGATTAATAGTCATGTAACTTATAATCATCAGGAAGCAGCTAAGTATGAGAACCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCAGTGTATGCTACTCTTAAGATACGGATCTACTTCTATGATTCGGTCGGCAATTAATAAATATTAAATTTTATTTCATGATTCTCGTCGACTTGAAGTGTCTTTAGAATTACATCGTATAATACATGATCAACTGCTCTGATTACATTATTAATTGAAATAACTCCTAATCTATCTAAATATTTAAGAACGTGATTCCTAAATACGCTTAAGAAAAGACCAGTCTGAGGCTGTAAGCTCGTCCAGACCCTGAAGTTGAGAAAACATTTGTGAATCCCCAGTTCCTTCCTCAGGTTGTGGTTGAATCTTATCTGGACTGATATGATGTCGTGGGGCATGTTGAATGGCCGGTTGTCGTGGTCGATAATCTTGAAATATAGGGGATTTTGTATCTCCCAGATAAACACGCCACTCTGTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGATCGATGCAGTTGATGTGTAGATAGTATGAGCAGCCGCAGTCGAGATCGACTCTTCTACGCCTCACTGCCTTCTTCTTGGCTATTCTGTGCTGGACTTTGATTGGCAGTTGAGTAGAGTGGCTCGTGGAGGGTGACGAATGTTGCATTTTTTAATGCCCAGGCTTTCAGGGGTGCATTTTTATCCTCGTCCAGATATTCTTTATATGAGGATGTCGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCGTACTTTGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTCAGATAATGCGGATCTACGTCATCAATGACGTTGTACCACGCATCATTGCTGTACACCTTGGGGCTCAGGTCAAGATGACCGCACAGATAATTGTGAGGTCCTAATGATCTGGCCCACATTGTTTTGCCGGTACGACTATCACCCTCAATTACTATACTATTCGGCCTCCATGGCCGCGCAGCGGCATCCATGACGTTCTCGGAAACCCACTCTTCAAGTTGTTCCGGAACTTGAGTAAAAGAAGAAGATAAAAAAGGAGAAACATAAGGAGCCGGTGGCTCCTGAAAAATCCTATCTAAATTACTATTTAAATTATGAAATTGCAACACAAAATCTTTTGGTGCTAATTCCTTAATGACTCTAAGAGCCTCTGACTTACTGCCTGTGTTAAGAGCTGCGGCGTAAGCGTCATTGGCTGATTGTTGTCCCCCCCTTGCAGATCGTCCATCGATCTGAAATTCTCCCCATTCGAGGGTGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGAAGTAAGGTCGAAGAATCGTTGATTGGTACTATTGTATTTTCCCTCGAATTGAATGAGGGCATGCATATGAGGTTCCCCATTCTCGTGGAGCTCTCTGCAGATTTTGATAAATAGCTTATTTACTGGGGTTTGAAGGGCTCTTATTTGGGAAAGTGCTTCCTCTTTAGTGAGAGAGCATTTGGGATAAGTGAGGAAATAATTTTTGGCTTTGATGCTGAAACGACCGGCTCTCGGCATCTTCTATGTCGTTTATGAATTGGGGGGCACTCAAAGTCTATGGCAATCGGGGGAACTGGGGGGCAATTTATATGGTGCCCCCCAAATGGCATTTCTGTAATAATCCTCATTGTAATTTGAAATTTGAAGTCCCTAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_009174971.1
|
|
Location
|
136-486 |
|
Gene Name
|
AV2 |
|
Protein Name
|
putative AV2 protein |
|
Coding Region
|
ATGTGGGATCCACTCTTGAACGAGTTCCCAGACTCTGTTCACGGTTTTCGTTGTATGCTAGCTATCAAATATTTGCAGGCCATTGAGCAAACCTATGAGCCCAACACTTTGGGCCACGAATTGATCCGTGATCTCATCTCCGTCGTTAGAGCTCGTGATTATGTCGAAGCGACCCGCCGATATAATCATTTCCACGCCCGCCTCGAAGGTGCGTCGGAGACTGAACTTCGACAGCCCTTATACCAGCCGTGCTGTTGTCCCCATTGTCCCAGGCACAAGCAGACGTCGGTCATGGACGTACAGGCCCATGTATCGAAAGCCCAGGACGTACAGAATGTACAGAAGCCCTGA |
|
Protein Sequence
|
MWDPLLNEFPDSVHGFRCMLAIKYLQAIEQTYEPNTLGHELIRDLISVVRARDYVEATRRYNHFHARLEGASETELRQPLYQPCCCPHCPRHKQTSVMDVQAHVSKAQDVQNVQKP |
|
NCBI Accession
|
YP_009174972.1
|
|
Location
|
296-1072 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGACCCGCCGATATAATCATTTCCACGCCCGCCTCGAAGGTGCGTCGGAGACTGAACTTCGACAGCCCTTATACCAGCCGTGCTGTTGTCCCCATTGTCCCAGGCACAAGCAGACGTCGGTCATGGACGTACAGGCCCATGTATCGAAAGCCCAGGACGTACAGAATGTACAGAAGCCCTGACGTTCCAAAGGGTTGTGAAGGCCCATGTAAGGTCCAGTCTTATGAGCAGAGGGATGATGTTAAGCATACTGGTATTGTTCGTTGTGTTAGTGATGTTACGCGTGGTCCGGGAATTACTCATAGGGTTGGCAAGAGGTTCTGTGTTAAGTCCATTTACATTTTAGGGAAAATATGGATGGATGAAAATATCAAGAAGCAGAATCACACTAATCAGGTTATGTTTTTTTTAGTTCGTGATAGAAGGCCTTACGGTGCAGCCCCAATGGATTTTGGGCAGGTGTTTAACATGTTTGATAACGAGCCCAGTACAGCTACGGTGAAGAATGATTTGAGAGACAGGTACCAGGTTTTGCGGAAGTTTCATGCAACTGTTGTAGGTGGTCCCTCTGGGATGAAGGAACAGGCGTTAGTTAAGAGGTTTTTTAGGATTAATAGTCATGTAACTTATAATCATCAGGAAGCAGCTAAGTATGAGAACCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCAGTGTATGCTACTCTTAAGATACGGATCTACTTCTATGATTCGGTCGGCAATTAA |
|
Protein Sequence
|
MSKRPADIIISTPASKVRRRLNFDSPYTSRAVVPIVPGTSRRRSWTYRPMYRKPRTYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGPGITHRVGKRFCVKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGAAPMDFGQVFNMFDNEPSTATVKNDLRDRYQVLRKFHATVVGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVGN |
|
NCBI Accession
|
YP_009174973.1
|
|
Location
|
1069-1473 |
|
Gene Name
|
AC3 |
|
Protein Name
|
replication enhancer protein |
|
Coding Region
|
ATGGATTCTCGCACAGGGGAACTCATCACTGCAGCTCAAGCACAGAGTGGCGTGTTTATCTGGGAGATACAAAATCCCCTATATTTCAAGATTATCGACCACGACAACCGGCCATTCAACATGCCCCACGACATCATATCAGTCCAGATAAGATTCAACCACAACCTGAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCAGGGTCTGGACGAGCTTACAGCCTCAGACTGGTCTTTTCTTAAGCGTATTTAGGAATCACGTTCTTAAATATTTAGATAGATTAGGAGTTATTTCAATTAATAATGTAATCAGAGCAGTTGATCATGTATTATACGATGTAATTCTAAAGACACTTCAAGTCGACGAGAATCATGAAATAAAATTTAATATTTATTAA |
|
Protein Sequence
|
MDSRTGELITAAQAQSGVFIWEIQNPLYFKIIDHDNRPFNMPHDIISVQIRFNHNLRKELGIHKCFLNFRVWTSLQPQTGLFLSVFRNHVLKYLDRLGVISINNVIRAVDHVLYDVILKTLQVDENHEIKFNIY |
|
NCBI Accession
|
YP_009174974.1
|
|
Location
|
1214-1621 |
|
Gene Name
|
transcriptional transactivator protein |
|
Protein Name
|
AC2 |
|
Coding Region
|
ATGCAACATTCGTCACCCTCCACGAGCCACTCTACTCAACTGCCAATCAAAGTCCAGCACAGAATAGCCAAGAAGAAGGCAGTGAGGCGTAGAAGAGTCGATCTCGACTGCGGCTGCTCATACTATCTACACATCAACTGCATCGATCATGGATTCTCGCACAGGGGAACTCATCACTGCAGCTCAAGCACAGAGTGGCGTGTTTATCTGGGAGATACAAAATCCCCTATATTTCAAGATTATCGACCACGACAACCGGCCATTCAACATGCCCCACGACATCATATCAGTCCAGATAAGATTCAACCACAACCTGAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCAGGGTCTGGACGAGCTTACAGCCTCAGACTGGTCTTTTCTTAAGCGTATTTAG |
|
Protein Sequence
|
MQHSSPSTSHSTQLPIKVQHRIAKKKAVRRRRVDLDCGCSYYLHINCIDHGFSHRGTHHCSSSTEWRVYLGDTKSPIFQDYRPRQPAIQHAPRHHISPDKIQPQPEEGTGDSQMFSQLQGLDELTASDWSFLKRI |
|
NCBI Accession
|
YP_009174975.1
|
|
Location
|
1530-2609 |
|
Gene Name
|
AC1 |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGCCGAGAGCCGGTCGTTTCAGCATCAAAGCCAAAAATTATTTCCTCACTTATCCCAAATGCTCTCTCACTAAAGAGGAAGCACTTTCCCAAATAAGAGCCCTTCAAACCCCAGTAAATAAGCTATTTATCAAAATCTGCAGAGAGCTCCACGAGAATGGGGAACCTCATATGCATGCCCTCATTCAATTCGAGGGAAAATACAATAGTACCAATCAACGATTCTTCGACCTTACTTCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACCCTCGAATGGGGAGAATTTCAGATCGATGGACGATCTGCAAGGGGGGGACAACAATCAGCCAATGACGCTTACGCCGCAGCTCTTAACACAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAGCACCAAAAGATTTTGTGTTGCAATTTCATAATTTAAATAGTAATTTAGATAGGATTTTTCAGGAGCCACCGGCTCCTTATGTTTCTCCTTTTTTATCTTCTTCTTTTACTCAAGTTCCGGAACAACTTGAAGAGTGGGTTTCCGAGAACGTCATGGATGCCGCTGCGCGGCCATGGAGGCCGAATAGTATAGTAATTGAGGGTGATAGTCGTACCGGCAAAACAATGTGGGCCAGATCATTAGGACCTCACAATTATCTGTGCGGTCATCTTGACCTGAGCCCCAAGGTGTACAGCAATGATGCGTGGTACAACGTCATTGATGACGTAGATCCGCATTATCTGAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAATACAAAGTACGGGAAGCCAATTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGCCCGACATCCTCATATAAAGAATATCTGGACGAGGATAAAAATGCACCCCTGAAAGCCTGGGCATTAAAAAATGCAACATTCGTCACCCTCCACGAGCCACTCTACTCAACTGCCAATCAAAGTCCAGCACAGAATAGCCAAGAAGAAGGCAGTGAGGCGTAG |
|
Protein Sequence
|
MPRAGRFSIKAKNYFLTYPKCSLTKEEALSQIRALQTPVNKLFIKICRELHENGEPHMHALIQFEGKYNSTNQRFFDLTSPSRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQSANDAYAAALNTGSKSEALRVIKELAPKDFVLQFHNLNSNLDRIFQEPPAPYVSPFLSSSFTQVPEQLEEWVSENVMDAAARPWRPNSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNAPLKAWALKNATFVTLHEPLYSTANQSPAQNSQEEGSEA |
|
NCBI Accession
|
YP_009174976.1
|
|
Location
|
2150-2452 |
|
Gene Name
|
AC4 |
|
Protein Name
|
putative AC4 protein |
|
Coding Region
|
ATGGGGAACCTCATATGCATGCCCTCATTCAATTCGAGGGAAAATACAATAGTACCAATCAACGATTCTTCGACCTTACTTCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACCCTCGAATGGGGAGAATTTCAGATCGATGGACGATCTGCAAGGGGGGGACAACAATCAGCCAATGACGCTTACGCCGCAGCTCTTAACACAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAG |
|
Protein Sequence
|
MGNLICMPSFNSRENTIVPINDSSTLLPQAGQHISIRTFRELNPAPTSSPTSTRTETPSNGENFRSMDDLQGGDNNQPMTLTPQLLTQAVSQRLLESLRN |