Tomato leaf curl Comoros virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_001430535.1
Isolate Mayotte:Dembeni
Release date 2015/11/3
Submitter Delatte,H., Martin,D.P., Naze,F., Goldbach,R., Reynaud,B., Peterschmitt,M., Lett,J.M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_028114
ACCGGATGGCCGCGCCCGAAAAAAGAAGGTGGTCCCCGCGCACTATCTTTTGTCATCCAATAAGAATCGCGCGTCAAAGCTTAGATAAGCGTTTTTGTCCTTATAAACTTGCTCGCCAAGTAGTTGTCTCACAAAATGTGGGATCCACTCTTGAACGAGTTCCCAGACTCTGTTCACGGTTTTCGTTGTATGCTAGCTATCAAATATTTGCAGGCCATTGAGCAAACCTATGAGCCCAACACTTTGGGCCACGAATTGATCCGTGATCTCATCTCCGTCGTTAGAGCTCGTGATTATGTCGAAGCGACCCGCCGATATAATCATTTCCACGCCCGCCTCGAAGGTGCGTCGGAGACTGAACTTCGACAGCCCTTATACCAGCCGTGCTGTTGTCCCCATTGTCCCAGGCACAAGCAGACGTCGGTCATGGACGTACAGGCCCATGTATCGAAAGCCCAGGACGTACAGAATGTACAGAAGCCCTGACGTTCCAAAGGGTTGTGAAGGCCCATGTAAGGTCCAGTCTTATGAGCAGAGGGATGATGTTAAGCATACTGGTATTGTTCGTTGTGTTAGTGATGTTACGCGTGGTCCGGGAATTACTCATAGGGTTGGCAAGAGGTTCTGTGTTAAGTCCATTTACATTTTAGGGAAAATATGGATGGATGAAAATATCAAGAAGCAGAATCACACTAATCAGGTTATGTTTTTTTTAGTTCGTGATAGAAGGCCTTACGGTGCAGCCCCAATGGATTTTGGGCAGGTGTTTAACATGTTTGATAACGAGCCCAGTACAGCTACGGTGAAGAATGATTTGAGAGACAGGTACCAGGTTTTGCGGAAGTTTCATGCAACTGTTGTAGGTGGTCCCTCTGGGATGAAGGAACAGGCGTTAGTTAAGAGGTTTTTTAGGATTAATAGTCATGTAACTTATAATCATCAGGAAGCAGCTAAGTATGAGAACCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCAGTGTATGCTACTCTTAAGATACGGATCTACTTCTATGATTCGGTCGGCAATTAATAAATATTAAATTTTATTTCATGATTCTCGTCGACTTGAAGTGTCTTTAGAATTACATCGTATAATACATGATCAACTGCTCTGATTACATTATTAATTGAAATAACTCCTAATCTATCTAAATATTTAAGAACGTGATTCCTAAATACGCTTAAGAAAAGACCAGTCTGAGGCTGTAAGCTCGTCCAGACCCTGAAGTTGAGAAAACATTTGTGAATCCCCAGTTCCTTCCTCAGGTTGTGGTTGAATCTTATCTGGACTGATATGATGTCGTGGGGCATGTTGAATGGCCGGTTGTCGTGGTCGATAATCTTGAAATATAGGGGATTTTGTATCTCCCAGATAAACACGCCACTCTGTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGATCGATGCAGTTGATGTGTAGATAGTATGAGCAGCCGCAGTCGAGATCGACTCTTCTACGCCTCACTGCCTTCTTCTTGGCTATTCTGTGCTGGACTTTGATTGGCAGTTGAGTAGAGTGGCTCGTGGAGGGTGACGAATGTTGCATTTTTTAATGCCCAGGCTTTCAGGGGTGCATTTTTATCCTCGTCCAGATATTCTTTATATGAGGATGTCGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCGTACTTTGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTCAGATAATGCGGATCTACGTCATCAATGACGTTGTACCACGCATCATTGCTGTACACCTTGGGGCTCAGGTCAAGATGACCGCACAGATAATTGTGAGGTCCTAATGATCTGGCCCACATTGTTTTGCCGGTACGACTATCACCCTCAATTACTATACTATTCGGCCTCCATGGCCGCGCAGCGGCATCCATGACGTTCTCGGAAACCCACTCTTCAAGTTGTTCCGGAACTTGAGTAAAAGAAGAAGATAAAAAAGGAGAAACATAAGGAGCCGGTGGCTCCTGAAAAATCCTATCTAAATTACTATTTAAATTATGAAATTGCAACACAAAATCTTTTGGTGCTAATTCCTTAATGACTCTAAGAGCCTCTGACTTACTGCCTGTGTTAAGAGCTGCGGCGTAAGCGTCATTGGCTGATTGTTGTCCCCCCCTTGCAGATCGTCCATCGATCTGAAATTCTCCCCATTCGAGGGTGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGAAGTAAGGTCGAAGAATCGTTGATTGGTACTATTGTATTTTCCCTCGAATTGAATGAGGGCATGCATATGAGGTTCCCCATTCTCGTGGAGCTCTCTGCAGATTTTGATAAATAGCTTATTTACTGGGGTTTGAAGGGCTCTTATTTGGGAAAGTGCTTCCTCTTTAGTGAGAGAGCATTTGGGATAAGTGAGGAAATAATTTTTGGCTTTGATGCTGAAACGACCGGCTCTCGGCATCTTCTATGTCGTTTATGAATTGGGGGGCACTCAAAGTCTATGGCAATCGGGGGAACTGGGGGGCAATTTATATGGTGCCCCCCAAATGGCATTTCTGTAATAATCCTCATTGTAATTTGAAATTTGAAGTCCCTAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009174971.1
Location 136-486
Gene Name AV2
Protein Name putative AV2 protein
Coding Region ATGTGGGATCCACTCTTGAACGAGTTCCCAGACTCTGTTCACGGTTTTCGTTGTATGCTAGCTATCAAATATTTGCAGGCCATTGAGCAAACCTATGAGCCCAACACTTTGGGCCACGAATTGATCCGTGATCTCATCTCCGTCGTTAGAGCTCGTGATTATGTCGAAGCGACCCGCCGATATAATCATTTCCACGCCCGCCTCGAAGGTGCGTCGGAGACTGAACTTCGACAGCCCTTATACCAGCCGTGCTGTTGTCCCCATTGTCCCAGGCACAAGCAGACGTCGGTCATGGACGTACAGGCCCATGTATCGAAAGCCCAGGACGTACAGAATGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPDSVHGFRCMLAIKYLQAIEQTYEPNTLGHELIRDLISVVRARDYVEATRRYNHFHARLEGASETELRQPLYQPCCCPHCPRHKQTSVMDVQAHVSKAQDVQNVQKP

NCBI Accession YP_009174972.1
Location 296-1072
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCCGCCGATATAATCATTTCCACGCCCGCCTCGAAGGTGCGTCGGAGACTGAACTTCGACAGCCCTTATACCAGCCGTGCTGTTGTCCCCATTGTCCCAGGCACAAGCAGACGTCGGTCATGGACGTACAGGCCCATGTATCGAAAGCCCAGGACGTACAGAATGTACAGAAGCCCTGACGTTCCAAAGGGTTGTGAAGGCCCATGTAAGGTCCAGTCTTATGAGCAGAGGGATGATGTTAAGCATACTGGTATTGTTCGTTGTGTTAGTGATGTTACGCGTGGTCCGGGAATTACTCATAGGGTTGGCAAGAGGTTCTGTGTTAAGTCCATTTACATTTTAGGGAAAATATGGATGGATGAAAATATCAAGAAGCAGAATCACACTAATCAGGTTATGTTTTTTTTAGTTCGTGATAGAAGGCCTTACGGTGCAGCCCCAATGGATTTTGGGCAGGTGTTTAACATGTTTGATAACGAGCCCAGTACAGCTACGGTGAAGAATGATTTGAGAGACAGGTACCAGGTTTTGCGGAAGTTTCATGCAACTGTTGTAGGTGGTCCCTCTGGGATGAAGGAACAGGCGTTAGTTAAGAGGTTTTTTAGGATTAATAGTCATGTAACTTATAATCATCAGGAAGCAGCTAAGTATGAGAACCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCAGTGTATGCTACTCTTAAGATACGGATCTACTTCTATGATTCGGTCGGCAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYTSRAVVPIVPGTSRRRSWTYRPMYRKPRTYRMYRSPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGPGITHRVGKRFCVKSIYILGKIWMDENIKKQNHTNQVMFFLVRDRRPYGAAPMDFGQVFNMFDNEPSTATVKNDLRDRYQVLRKFHATVVGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVGN

NCBI Accession YP_009174973.1
Location 1069-1473
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCTCGCACAGGGGAACTCATCACTGCAGCTCAAGCACAGAGTGGCGTGTTTATCTGGGAGATACAAAATCCCCTATATTTCAAGATTATCGACCACGACAACCGGCCATTCAACATGCCCCACGACATCATATCAGTCCAGATAAGATTCAACCACAACCTGAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCAGGGTCTGGACGAGCTTACAGCCTCAGACTGGTCTTTTCTTAAGCGTATTTAGGAATCACGTTCTTAAATATTTAGATAGATTAGGAGTTATTTCAATTAATAATGTAATCAGAGCAGTTGATCATGTATTATACGATGTAATTCTAAAGACACTTCAAGTCGACGAGAATCATGAAATAAAATTTAATATTTATTAA
Protein Sequence MDSRTGELITAAQAQSGVFIWEIQNPLYFKIIDHDNRPFNMPHDIISVQIRFNHNLRKELGIHKCFLNFRVWTSLQPQTGLFLSVFRNHVLKYLDRLGVISINNVIRAVDHVLYDVILKTLQVDENHEIKFNIY

NCBI Accession YP_009174974.1
Location 1214-1621
Gene Name transcriptional transactivator protein
Protein Name AC2
Coding Region ATGCAACATTCGTCACCCTCCACGAGCCACTCTACTCAACTGCCAATCAAAGTCCAGCACAGAATAGCCAAGAAGAAGGCAGTGAGGCGTAGAAGAGTCGATCTCGACTGCGGCTGCTCATACTATCTACACATCAACTGCATCGATCATGGATTCTCGCACAGGGGAACTCATCACTGCAGCTCAAGCACAGAGTGGCGTGTTTATCTGGGAGATACAAAATCCCCTATATTTCAAGATTATCGACCACGACAACCGGCCATTCAACATGCCCCACGACATCATATCAGTCCAGATAAGATTCAACCACAACCTGAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCAGGGTCTGGACGAGCTTACAGCCTCAGACTGGTCTTTTCTTAAGCGTATTTAG
Protein Sequence MQHSSPSTSHSTQLPIKVQHRIAKKKAVRRRRVDLDCGCSYYLHINCIDHGFSHRGTHHCSSSTEWRVYLGDTKSPIFQDYRPRQPAIQHAPRHHISPDKIQPQPEEGTGDSQMFSQLQGLDELTASDWSFLKRI

NCBI Accession YP_009174975.1
Location 1530-2609
Gene Name AC1
Protein Name replication-associated protein
Coding Region ATGCCGAGAGCCGGTCGTTTCAGCATCAAAGCCAAAAATTATTTCCTCACTTATCCCAAATGCTCTCTCACTAAAGAGGAAGCACTTTCCCAAATAAGAGCCCTTCAAACCCCAGTAAATAAGCTATTTATCAAAATCTGCAGAGAGCTCCACGAGAATGGGGAACCTCATATGCATGCCCTCATTCAATTCGAGGGAAAATACAATAGTACCAATCAACGATTCTTCGACCTTACTTCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACCCTCGAATGGGGAGAATTTCAGATCGATGGACGATCTGCAAGGGGGGGACAACAATCAGCCAATGACGCTTACGCCGCAGCTCTTAACACAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAGCACCAAAAGATTTTGTGTTGCAATTTCATAATTTAAATAGTAATTTAGATAGGATTTTTCAGGAGCCACCGGCTCCTTATGTTTCTCCTTTTTTATCTTCTTCTTTTACTCAAGTTCCGGAACAACTTGAAGAGTGGGTTTCCGAGAACGTCATGGATGCCGCTGCGCGGCCATGGAGGCCGAATAGTATAGTAATTGAGGGTGATAGTCGTACCGGCAAAACAATGTGGGCCAGATCATTAGGACCTCACAATTATCTGTGCGGTCATCTTGACCTGAGCCCCAAGGTGTACAGCAATGATGCGTGGTACAACGTCATTGATGACGTAGATCCGCATTATCTGAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAATACAAAGTACGGGAAGCCAATTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGCCCGACATCCTCATATAAAGAATATCTGGACGAGGATAAAAATGCACCCCTGAAAGCCTGGGCATTAAAAAATGCAACATTCGTCACCCTCCACGAGCCACTCTACTCAACTGCCAATCAAAGTCCAGCACAGAATAGCCAAGAAGAAGGCAGTGAGGCGTAG
Protein Sequence MPRAGRFSIKAKNYFLTYPKCSLTKEEALSQIRALQTPVNKLFIKICRELHENGEPHMHALIQFEGKYNSTNQRFFDLTSPSRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQSANDAYAAALNTGSKSEALRVIKELAPKDFVLQFHNLNSNLDRIFQEPPAPYVSPFLSSSFTQVPEQLEEWVSENVMDAAARPWRPNSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNAPLKAWALKNATFVTLHEPLYSTANQSPAQNSQEEGSEA

NCBI Accession YP_009174976.1
Location 2150-2452
Gene Name AC4
Protein Name putative AC4 protein
Coding Region ATGGGGAACCTCATATGCATGCCCTCATTCAATTCGAGGGAAAATACAATAGTACCAATCAACGATTCTTCGACCTTACTTCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACACCCTCGAATGGGGAGAATTTCAGATCGATGGACGATCTGCAAGGGGGGGACAACAATCAGCCAATGACGCTTACGCCGCAGCTCTTAACACAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAG
Protein Sequence MGNLICMPSFNSRENTIVPINDSSTLLPQAGQHISIRTFRELNPAPTSSPTSTRTETPSNGENFRSMDDLQGGDNNQPMTLTPQLLTQAVSQRLLESLRN

References More References in PubMed

1

A New Tomato leaf curl virus from Mayotte.

Lett JM, et al.  Plant Dis. 2004 Jun;88(6):681. doi: 10.1094/PDIS.2004.88.6.681B.

PMID: 30812598
2

Tomato leaf curl Mahe virus: a novel tomato-infecting monopartite begomovirus from the Seychelles.

Scussel S, et al.  Arch Virol. 2018 Dec;163(12):3451-3453. doi: 10.1007/s00705-018-4007-3. Epub 2018 Sep 3.

PMID: 30178119
3

Molecular Characterization of a Begomovirus Associated with Tomato Leaf Curl Disease in Uganda.

Shih SL, et al.  Plant Dis. 2006 Feb;90(2):246. doi: 10.1094/PD-90-0246A.

PMID: 30786424
4

Within-host dynamics of the emergence of Tomato yellow leaf curl virus recombinants.

Urbino C, et al.  PLoS One. 2013;8(3):e58375. doi: 10.1371/journal.pone.0058375. Epub 2013 Mar 5.

PMID: 23472190
5

Differential disease phenotype of begomoviruses associated with tobacco leaf curl disease in Comoros.

Thierry M, et al.  Arch Virol. 2012 Mar;157(3):545-50. doi: 10.1007/s00705-011-1199-1. Epub 2011 Dec 21.

PMID: 22187103
6

Complex recombination patterns arising during geminivirus coinfections preserve and demarcate biologically important intra-genome interaction networks.

Martin DP, et al.  PLoS Pathog. 2011 Sep;7(9):e1002203. doi: 10.1371/journal.ppat.1002203. Epub 2011 Sep 15.

PMID: 21949649
7

A novel synthetic quantification standard including virus and internal report targets: application for the detection and quantification of emerging begomoviruses on tomato.

Péréfarres F, et al.  Virol J. 2011 Aug 5;8:389. doi: 10.1186/1743-422X-8-389.

PMID: 21819593