Tomato leaf curl China virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000842525.1
Isolate China:Guangxi
Release date 2015/2/12
Submitter Ma,X., Zhou,X.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_005320
ACCGGATGGCCGCGATTTTTTTATGTGGTCCCCACCACTAAGAAATGTCCTCCACTTAGAACGCTCCCTCAAAGCCTATTTAATTCAAATCCGTTATAAATACTTGGTCCCCAAGTACTCACTTTAAAATATGTGGGATCCTTTACTGAATGAGTTTCCCGAAACCGTACATGGTTTCAGGTGTATGTTAGCCATCAAGTATTTGCAGCTGGTAGAAAATACATACTCCCCTGATACTTTAGGGTACGATTTAATTCGTGATTTAATTTTAGTCGTCCGTGCTAGAGATTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAACTTCGACAGCCCGTATGCCAGCCGTGCTGCTGTCCCCACTGTCCTCGTCACAAATCGAAAGCGATCATGGACCAACAGGCCCATGAATCGAAAGCCGAAAATGTACAGGATGTACAGAAGCCCTGATGTCCCTAGAGGATGTGAGGGTCCATGTAAGGTCCAGTCGTTTGATGCTAAGAACGATATTGGTCACATGGGTAAGGTTATATGTTTGTCCGATGTTACGAGGGGAAATGGTTTGACTCATCGAGTTGGTAAACGTTTCTGCGTTAAGTCGTTGTATTTTGTGGGCAAGATTTGGATGGATGAGAACATCAAGGTTAAGAACCACACTAACACCGTTTTGTTCTGGATTGTCCGAGACAGGCGTCCTAGTGGCACCCCTAGTGATTTTCAGCAGGTTTTTAATGTTTATGATAACGAGCCGTCTACCGCTACTGTGAAGAACGATCAGCGTGATCGTTACCAAGTGATACGCAGGTTTCAGGCAACGGTGACTGGTGGACAATATGCAGCTAAGGAACAGGCGATAATTAGAAGATTTTATCGTGTTAATAATTACGTAGTGTATAATCACCAGGAAGCTGGGAAGTATGAGAACCATACTGAAAATGCTCTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACTTTGAAAGTGAGGAGTTATTTCTATGACTCAGTCACGAATTAATAAAGATTAAATTTTATTACATGAGAACTTTGTACAAATGTTGTTTGCGTTAATGCGTCCCATAATACATAATTCACTGCTCTAATTACATTATTTAAACTAATGACACCTAAATTACTGAGAAACTTCAAAACTTGTGTCCTAAATACTCTTAAGAAACGACCAGTCTGAAGGTGTGAGTTCGTCCATATCCGGAAGTCCAGAAAACATTGGTGCATCCCCAGTGCTTTCCTCAGGTTGTAGTTGAATTGGATCCTGACCGTCACTATGTCGTTGTCCGACAGGAAGGGCCTGTTTCGTAGTTCCGTTATCTTGAAATATAGGGGATTTGTTATCTCCCAAGTAAAAACGCCATTCTCTGCCTGAGTTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTGGCGCAGTTAAGTGAGCTGAAATAAGAACAACCACAGGGAAGGTCAATCCTCCGTCTCCTGGTTATTTTCTTCTTGGCTATCCTGTGCTGGACTTTGATAGGTACTTGAGTACAGTGGCTCGGTGATGCTGACGAAGACTGCATTTTTTATTGCCCACGACTTTAATGCAGTATTCTTTTCCTCGTCTAGGTATTCTTTATAGCTTGAGTTGGGCCCTGGATTGCATAGGAAGATAGCGGGAATGCCACCTTTAATTTGAACAGGCTTTCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGGTAGTGCGGATCTACGTCATCAATGACGTTGTACCAGGCGTCATTATTGTATACCTTTGGACTCAAATCAAGATGACCACACAAATAATTATGGCGTCCTAATGACCTGGCCCACATCGTCTTCCCCGTCCGACTATCGCCTTCGATAACTATACTTATTGGTCGTAATGGCCGCGCAGCGGAACTGACGACGTTCTCTGCAGCCCAGTCTTCGAGTTCCTCTGGAACTCGATCAAACGAAGAAGAAGAAAAAGGCGAAACATAAACCTCCATCTGAGGAGTAAAAATCCTATCTAAATTATTATTTAAATTATGAAATTGTAAAACATAATCTTTAGGAGCTTTCTCCTTTAGTATATTGAGGGCCGAAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCCGATCTTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCCGTCTTTGTCCATGTAGGACTTGACATCTGTTGAGCTTTTAGCTGCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGATGTGAGATCGAAGAATCTTTGATTTTTACACTGGAATTTTCCTTCGAATTGGATGAGCACATGCAGGTGAGGAGACCCATCTTCGTGTAATTCTCTGCAGATGCGGATAAATAGTTTATTTACTGGGGTTTCTAGGGTTTTAATTTGGGAAAGTGCTTCTTCTTTAGTGAGAGAGCAGTGTGGATATGTGAGGAAATAATTTTTGGCATTAATTCTGAATTTATTTGGGGGAGCCATTGACTGGTCAATCGGTGTCTCTCAAACTTGGCTATACAATTGGTGTCTGGTGTCTTATTTATATGTAGACACCAAATGGCATTATCGTAATTCCCATAAGAATTTCAAAATCCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession NP_955737.1
Location 131-481
Gene Name AV2
Protein Name AV2 protein
Coding Region ATGTGGGATCCTTTACTGAATGAGTTTCCCGAAACCGTACATGGTTTCAGGTGTATGTTAGCCATCAAGTATTTGCAGCTGGTAGAAAATACATACTCCCCTGATACTTTAGGGTACGATTTAATTCGTGATTTAATTTTAGTCGTCCGTGCTAGAGATTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAACTTCGACAGCCCGTATGCCAGCCGTGCTGCTGTCCCCACTGTCCTCGTCACAAATCGAAAGCGATCATGGACCAACAGGCCCATGAATCGAAAGCCGAAAATGTACAGGATGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLILVVRARDYVEASRRYSHFHSRIQGASPAELRQPVCQPCCCPHCPRHKSKAIMDQQAHESKAENVQDVQKP

NCBI Accession NP_955738.1
Location 291-1064
Gene Name AV1
Protein Name AV1 protein
Coding Region ATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAACTTCGACAGCCCGTATGCCAGCCGTGCTGCTGTCCCCACTGTCCTCGTCACAAATCGAAAGCGATCATGGACCAACAGGCCCATGAATCGAAAGCCGAAAATGTACAGGATGTACAGAAGCCCTGATGTCCCTAGAGGATGTGAGGGTCCATGTAAGGTCCAGTCGTTTGATGCTAAGAACGATATTGGTCACATGGGTAAGGTTATATGTTTGTCCGATGTTACGAGGGGAAATGGTTTGACTCATCGAGTTGGTAAACGTTTCTGCGTTAAGTCGTTGTATTTTGTGGGCAAGATTTGGATGGATGAGAACATCAAGGTTAAGAACCACACTAACACCGTTTTGTTCTGGATTGTCCGAGACAGGCGTCCTAGTGGCACCCCTAGTGATTTTCAGCAGGTTTTTAATGTTTATGATAACGAGCCGTCTACCGCTACTGTGAAGAACGATCAGCGTGATCGTTACCAAGTGATACGCAGGTTTCAGGCAACGGTGACTGGTGGACAATATGCAGCTAAGGAACAGGCGATAATTAGAAGATTTTATCGTGTTAATAATTACGTAGTGTATAATCACCAGGAAGCTGGGAAGTATGAGAACCATACTGAAAATGCTCTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACTTTGAAAGTGAGGAGTTATTTCTATGACTCAGTCACGAATTAA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDSPYASRAAVPTVLVTNRKRSWTNRPMNRKPKMYRMYRSPDVPRGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGNGLTHRVGKRFCVKSLYFVGKIWMDENIKVKNHTNTVLFWIVRDRRPSGTPSDFQQVFNVYDNEPSTATVKNDQRDRYQVIRRFQATVTGGQYAAKEQAIIRRFYRVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKVRSYFYDSVTN

NCBI Accession NP_955739.1
Location 1061-1465
Gene Name AC3
Protein Name AC3 protein
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAGGCAGAGAATGGCGTTTTTACTTGGGAGATAACAAATCCCCTATATTTCAAGATAACGGAACTACGAAACAGGCCCTTCCTGTCGGACAACGACATAGTGACGGTCAGGATCCAATTCAACTACAACCTGAGGAAAGCACTGGGGATGCACCAATGTTTTCTGGACTTCCGGATATGGACGAACTCACACCTTCAGACTGGTCGTTTCTTAAGAGTATTTAGGACACAAGTTTTGAAGTTTCTCAGTAATTTAGGTGTCATTAGTTTAAATAATGTAATTAGAGCAGTGAATTATGTATTATGGGACGCATTAACGCAAACAACATTTGTACAAAGTTCTCATGTAATAAAATTTAATCTTTATTAA
Protein Sequence MDSRTGELITATQAENGVFTWEITNPLYFKITELRNRPFLSDNDIVTVRIQFNYNLRKALGMHQCFLDFRIWTNSHLQTGRFLRVFRTQVLKFLSNLGVISLNNVIRAVNYVLWDALTQTTFVQSSHVIKFNLY

NCBI Accession NP_955740.1
Location 1206-1613
Gene Name AC2
Protein Name AC2 protein
Coding Region ATGCAGTCTTCGTCAGCATCACCGAGCCACTGTACTCAAGTACCTATCAAAGTCCAGCACAGGATAGCCAAGAAGAAAATAACCAGGAGACGGAGGATTGACCTTCCCTGTGGTTGTTCTTATTTCAGCTCACTTAACTGCGCCAACCATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAGGCAGAGAATGGCGTTTTTACTTGGGAGATAACAAATCCCCTATATTTCAAGATAACGGAACTACGAAACAGGCCCTTCCTGTCGGACAACGACATAGTGACGGTCAGGATCCAATTCAACTACAACCTGAGGAAAGCACTGGGGATGCACCAATGTTTTCTGGACTTCCGGATATGGACGAACTCACACCTTCAGACTGGTCGTTTCTTAAGAGTATTTAG
Protein Sequence MQSSSASPSHCTQVPIKVQHRIAKKKITRRRRIDLPCGCSYFSSLNCANHGFTHRGTHHCNSGREWRFYLGDNKSPIFQDNGTTKQALPVGQRHSDGQDPIQLQPEESTGDAPMFSGLPDMDELTPSDWSFLKSI

NCBI Accession NP_955741.1
Location 1513-2601
Gene Name AC1
Protein Name AC1 protein
Coding Region ATGGCTCCCCCAAATAAATTCAGAATTAATGCCAAAAATTATTTCCTCACATATCCACACTGCTCTCTCACTAAAGAAGAAGCACTTTCCCAAATTAAAACCCTAGAAACCCCAGTAAATAAACTATTTATCCGCATCTGCAGAGAATTACACGAAGATGGGTCTCCTCACCTGCATGTGCTCATCCAATTCGAAGGAAAATTCCAGTGTAAAAATCAAAGATTCTTCGATCTCACATCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGCAGCTAAAAGCTCAACAGATGTCAAGTCCTACATGGACAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTTCGGCCCTCAATATACTAAAGGAGAAAGCTCCTAAAGATTATGTTTTACAATTTCATAATTTAAATAATAATTTAGATAGGATTTTTACTCCTCAGATGGAGGTTTATGTTTCGCCTTTTTCTTCTTCTTCGTTTGATCGAGTTCCAGAGGAACTCGAAGACTGGGCTGCAGAGAACGTCGTCAGTTCCGCTGCGCGGCCATTACGACCAATAAGTATAGTTATCGAAGGCGATAGTCGGACGGGGAAGACGATGTGGGCCAGGTCATTAGGACGCCATAATTATTTGTGTGGTCATCTTGATTTGAGTCCAAAGGTATACAATAATGACGCCTGGTACAACGTCATTGATGACGTAGATCCGCACTACCTAAAGCATTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACAAAGTACGGAAAGCCTGTTCAAATTAAAGGTGGCATTCCCGCTATCTTCCTATGCAATCCAGGGCCCAACTCAAGCTATAAAGAATACCTAGACGAGGAAAAGAATACTGCATTAAAGTCGTGGGCAATAAAAAATGCAGTCTTCGTCAGCATCACCGAGCCACTGTACTCAAGTACCTATCAAAGTCCAGCACAGGATAGCCAAGAAGAAAATAACCAGGAGACGGAGGATTGA
Protein Sequence MAPPNKFRINAKNYFLTYPHCSLTKEEALSQIKTLETPVNKLFIRICRELHEDGSPHLHVLIQFEGKFQCKNQRFFDLTSPSRSAHFHPNIQAAKSSTDVKSYMDKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKASALNILKEKAPKDYVLQFHNLNNNLDRIFTPQMEVYVSPFSSSSFDRVPEELEDWAAENVVSSAARPLRPISIVIEGDSRTGKTMWARSLGRHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEYLDEEKNTALKSWAIKNAVFVSITEPLYSSTYQSPAQDSQEENNQETED

NCBI Accession NP_955742.1
Location 2151-2444
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGTCTCCTCACCTGCATGTGCTCATCCAATTCGAAGGAAAATTCCAGTGTAAAAATCAAAGATTCTTCGATCTCACATCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGCAGCTAAAAGCTCAACAGATGTCAAGTCCTACATGGACAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTTCGGCCCTCAATATACTAA
Protein Sequence MGLLTCMCSSNSKENSSVKIKDSSISHPQAGQHISIRTFRQLKAQQMSSPTWTKTETCLIMEFSRSMEDRLEEVANLPTTHMPRQSIQGPKLRPSIY

References More References in PubMed

1

Tomato leaf curl New Delhi virus: an emerging plant begomovirus threatening cucurbit production.

Cai L, et al.  aBIOTECH. 2023 Oct 25;4(3):257-266. doi: 10.1007/s42994-023-00118-4. eCollection 2023 Sep.

PMID: 37970471

2

First report of squash leaf curl China virus infecting tomato in China.

Qiu Y, et al.  Plant Dis. 2022 Feb 27. doi: 10.1094/PDIS-10-21-2192-PDN. Online ahead of print.

PMID: 35224985

3

Natural resistance of tomato plants to Tomato yellow leaf curl virus.

H El-Sappah A, et al.  Front Plant Sci. 2022 Dec 19;13:1081549. doi: 10.3389/fpls.2022.1081549. eCollection 2022.

PMID: 36600922

4

Occurrence of Tomato leaf curl New Delhi virus in tomato (Lycopersicon esculentum) in China.

Li R, et al.  Plant Dis. 2022 Oct 24. doi: 10.1094/PDIS-06-22-1427-PDN. Online ahead of print.

PMID: 36281022

5

A rapid detection of tomato yellow leaf curl virus using recombinase polymerase amplification-lateral flow dipstick assay.

Zhou Y, et al.  Lett Appl Microbiol. 2022 May;74(5):640-646. doi: 10.1111/lam.13611. Epub 2021 Dec 14.

PMID: 34822723

6

Occurrence of Tomato Leaf Curl New Delhi Virus in Cucurbit Plants in China.

Zeng R, et al.  Plant Dis. 2023 Mar 22. doi: 10.1094/PDIS-01-23-0059-PDN. Online ahead of print.

PMID: 36947833

7

Tobacco leaf curl Puer virus: a novel monopartite begomovirus infecting Nicotiana tabacum in China.

Jiang N, et al.  Arch Virol. 2022 Jan;167(1):229-232. doi: 10.1007/s00705-021-05267-9. Epub 2021 Oct 15.

PMID: 34652555

8

First Report of Tomato Yellow Leaf Curl Virus Infecting Pepper and Tomato in Oklahoma.

Paslay C, et al.  Plant Dis. 2022 Aug 12. doi: 10.1094/PDIS-04-22-0927-PDN. Online ahead of print.

PMID: 35961018

9

Resistance to Tomato Yellow Leaf Curl Virus in Tomato Germplasm.

Yan Z, et al.  Front Plant Sci. 2018 Aug 20;9:1198. doi: 10.3389/fpls.2018.01198. eCollection 2018.

PMID: 30177938

10

Detecting Tomato Leaf Curl New Delhi Virus Causing Ridge Gourd Yellow Mosaic Disease, and Other Begomoviruses by Antibody-Based Methods.

Naganur P, et al.  Plants (Basel). 2023 Jan 20;12(3):490. doi: 10.3390/plants12030490.

PMID: 36771575