Tomato leaf curl China virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000842525.1
Isolate China:Guangxi
Release date 2015/2/12
Submitter Ma,X., Zhou,X.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_005320
ACCGGATGGCCGCGATTTTTTTATGTGGTCCCCACCACTAAGAAATGTCCTCCACTTAGAACGCTCCCTCAAAGCCTATTTAATTCAAATCCGTTATAAATACTTGGTCCCCAAGTACTCACTTTAAAATATGTGGGATCCTTTACTGAATGAGTTTCCCGAAACCGTACATGGTTTCAGGTGTATGTTAGCCATCAAGTATTTGCAGCTGGTAGAAAATACATACTCCCCTGATACTTTAGGGTACGATTTAATTCGTGATTTAATTTTAGTCGTCCGTGCTAGAGATTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAACTTCGACAGCCCGTATGCCAGCCGTGCTGCTGTCCCCACTGTCCTCGTCACAAATCGAAAGCGATCATGGACCAACAGGCCCATGAATCGAAAGCCGAAAATGTACAGGATGTACAGAAGCCCTGATGTCCCTAGAGGATGTGAGGGTCCATGTAAGGTCCAGTCGTTTGATGCTAAGAACGATATTGGTCACATGGGTAAGGTTATATGTTTGTCCGATGTTACGAGGGGAAATGGTTTGACTCATCGAGTTGGTAAACGTTTCTGCGTTAAGTCGTTGTATTTTGTGGGCAAGATTTGGATGGATGAGAACATCAAGGTTAAGAACCACACTAACACCGTTTTGTTCTGGATTGTCCGAGACAGGCGTCCTAGTGGCACCCCTAGTGATTTTCAGCAGGTTTTTAATGTTTATGATAACGAGCCGTCTACCGCTACTGTGAAGAACGATCAGCGTGATCGTTACCAAGTGATACGCAGGTTTCAGGCAACGGTGACTGGTGGACAATATGCAGCTAAGGAACAGGCGATAATTAGAAGATTTTATCGTGTTAATAATTACGTAGTGTATAATCACCAGGAAGCTGGGAAGTATGAGAACCATACTGAAAATGCTCTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACTTTGAAAGTGAGGAGTTATTTCTATGACTCAGTCACGAATTAATAAAGATTAAATTTTATTACATGAGAACTTTGTACAAATGTTGTTTGCGTTAATGCGTCCCATAATACATAATTCACTGCTCTAATTACATTATTTAAACTAATGACACCTAAATTACTGAGAAACTTCAAAACTTGTGTCCTAAATACTCTTAAGAAACGACCAGTCTGAAGGTGTGAGTTCGTCCATATCCGGAAGTCCAGAAAACATTGGTGCATCCCCAGTGCTTTCCTCAGGTTGTAGTTGAATTGGATCCTGACCGTCACTATGTCGTTGTCCGACAGGAAGGGCCTGTTTCGTAGTTCCGTTATCTTGAAATATAGGGGATTTGTTATCTCCCAAGTAAAAACGCCATTCTCTGCCTGAGTTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTGGCGCAGTTAAGTGAGCTGAAATAAGAACAACCACAGGGAAGGTCAATCCTCCGTCTCCTGGTTATTTTCTTCTTGGCTATCCTGTGCTGGACTTTGATAGGTACTTGAGTACAGTGGCTCGGTGATGCTGACGAAGACTGCATTTTTTATTGCCCACGACTTTAATGCAGTATTCTTTTCCTCGTCTAGGTATTCTTTATAGCTTGAGTTGGGCCCTGGATTGCATAGGAAGATAGCGGGAATGCCACCTTTAATTTGAACAGGCTTTCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGGTAGTGCGGATCTACGTCATCAATGACGTTGTACCAGGCGTCATTATTGTATACCTTTGGACTCAAATCAAGATGACCACACAAATAATTATGGCGTCCTAATGACCTGGCCCACATCGTCTTCCCCGTCCGACTATCGCCTTCGATAACTATACTTATTGGTCGTAATGGCCGCGCAGCGGAACTGACGACGTTCTCTGCAGCCCAGTCTTCGAGTTCCTCTGGAACTCGATCAAACGAAGAAGAAGAAAAAGGCGAAACATAAACCTCCATCTGAGGAGTAAAAATCCTATCTAAATTATTATTTAAATTATGAAATTGTAAAACATAATCTTTAGGAGCTTTCTCCTTTAGTATATTGAGGGCCGAAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCCGATCTTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCCGTCTTTGTCCATGTAGGACTTGACATCTGTTGAGCTTTTAGCTGCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGATGTGAGATCGAAGAATCTTTGATTTTTACACTGGAATTTTCCTTCGAATTGGATGAGCACATGCAGGTGAGGAGACCCATCTTCGTGTAATTCTCTGCAGATGCGGATAAATAGTTTATTTACTGGGGTTTCTAGGGTTTTAATTTGGGAAAGTGCTTCTTCTTTAGTGAGAGAGCAGTGTGGATATGTGAGGAAATAATTTTTGGCATTAATTCTGAATTTATTTGGGGGAGCCATTGACTGGTCAATCGGTGTCTCTCAAACTTGGCTATACAATTGGTGTCTGGTGTCTTATTTATATGTAGACACCAAATGGCATTATCGTAATTCCCATAAGAATTTCAAAATCCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession NP_955737.1
Location 131-481
Gene Name AV2
Protein Name AV2 protein
Coding Region ATGTGGGATCCTTTACTGAATGAGTTTCCCGAAACCGTACATGGTTTCAGGTGTATGTTAGCCATCAAGTATTTGCAGCTGGTAGAAAATACATACTCCCCTGATACTTTAGGGTACGATTTAATTCGTGATTTAATTTTAGTCGTCCGTGCTAGAGATTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAACTTCGACAGCCCGTATGCCAGCCGTGCTGCTGTCCCCACTGTCCTCGTCACAAATCGAAAGCGATCATGGACCAACAGGCCCATGAATCGAAAGCCGAAAATGTACAGGATGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLILVVRARDYVEASRRYSHFHSRIQGASPAELRQPVCQPCCCPHCPRHKSKAIMDQQAHESKAENVQDVQKP

NCBI Accession NP_955738.1
Location 291-1064
Gene Name AV1
Protein Name AV1 protein
Coding Region ATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAACTTCGACAGCCCGTATGCCAGCCGTGCTGCTGTCCCCACTGTCCTCGTCACAAATCGAAAGCGATCATGGACCAACAGGCCCATGAATCGAAAGCCGAAAATGTACAGGATGTACAGAAGCCCTGATGTCCCTAGAGGATGTGAGGGTCCATGTAAGGTCCAGTCGTTTGATGCTAAGAACGATATTGGTCACATGGGTAAGGTTATATGTTTGTCCGATGTTACGAGGGGAAATGGTTTGACTCATCGAGTTGGTAAACGTTTCTGCGTTAAGTCGTTGTATTTTGTGGGCAAGATTTGGATGGATGAGAACATCAAGGTTAAGAACCACACTAACACCGTTTTGTTCTGGATTGTCCGAGACAGGCGTCCTAGTGGCACCCCTAGTGATTTTCAGCAGGTTTTTAATGTTTATGATAACGAGCCGTCTACCGCTACTGTGAAGAACGATCAGCGTGATCGTTACCAAGTGATACGCAGGTTTCAGGCAACGGTGACTGGTGGACAATATGCAGCTAAGGAACAGGCGATAATTAGAAGATTTTATCGTGTTAATAATTACGTAGTGTATAATCACCAGGAAGCTGGGAAGTATGAGAACCATACTGAAAATGCTCTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACTTTGAAAGTGAGGAGTTATTTCTATGACTCAGTCACGAATTAA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDSPYASRAAVPTVLVTNRKRSWTNRPMNRKPKMYRMYRSPDVPRGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGNGLTHRVGKRFCVKSLYFVGKIWMDENIKVKNHTNTVLFWIVRDRRPSGTPSDFQQVFNVYDNEPSTATVKNDQRDRYQVIRRFQATVTGGQYAAKEQAIIRRFYRVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKVRSYFYDSVTN

NCBI Accession NP_955739.1
Location 1061-1465
Gene Name AC3
Protein Name AC3 protein
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAGGCAGAGAATGGCGTTTTTACTTGGGAGATAACAAATCCCCTATATTTCAAGATAACGGAACTACGAAACAGGCCCTTCCTGTCGGACAACGACATAGTGACGGTCAGGATCCAATTCAACTACAACCTGAGGAAAGCACTGGGGATGCACCAATGTTTTCTGGACTTCCGGATATGGACGAACTCACACCTTCAGACTGGTCGTTTCTTAAGAGTATTTAGGACACAAGTTTTGAAGTTTCTCAGTAATTTAGGTGTCATTAGTTTAAATAATGTAATTAGAGCAGTGAATTATGTATTATGGGACGCATTAACGCAAACAACATTTGTACAAAGTTCTCATGTAATAAAATTTAATCTTTATTAA
Protein Sequence MDSRTGELITATQAENGVFTWEITNPLYFKITELRNRPFLSDNDIVTVRIQFNYNLRKALGMHQCFLDFRIWTNSHLQTGRFLRVFRTQVLKFLSNLGVISLNNVIRAVNYVLWDALTQTTFVQSSHVIKFNLY

NCBI Accession NP_955740.1
Location 1206-1613
Gene Name AC2
Protein Name AC2 protein
Coding Region ATGCAGTCTTCGTCAGCATCACCGAGCCACTGTACTCAAGTACCTATCAAAGTCCAGCACAGGATAGCCAAGAAGAAAATAACCAGGAGACGGAGGATTGACCTTCCCTGTGGTTGTTCTTATTTCAGCTCACTTAACTGCGCCAACCATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAGGCAGAGAATGGCGTTTTTACTTGGGAGATAACAAATCCCCTATATTTCAAGATAACGGAACTACGAAACAGGCCCTTCCTGTCGGACAACGACATAGTGACGGTCAGGATCCAATTCAACTACAACCTGAGGAAAGCACTGGGGATGCACCAATGTTTTCTGGACTTCCGGATATGGACGAACTCACACCTTCAGACTGGTCGTTTCTTAAGAGTATTTAG
Protein Sequence MQSSSASPSHCTQVPIKVQHRIAKKKITRRRRIDLPCGCSYFSSLNCANHGFTHRGTHHCNSGREWRFYLGDNKSPIFQDNGTTKQALPVGQRHSDGQDPIQLQPEESTGDAPMFSGLPDMDELTPSDWSFLKSI

NCBI Accession NP_955741.1
Location 1513-2601
Gene Name AC1
Protein Name AC1 protein
Coding Region ATGGCTCCCCCAAATAAATTCAGAATTAATGCCAAAAATTATTTCCTCACATATCCACACTGCTCTCTCACTAAAGAAGAAGCACTTTCCCAAATTAAAACCCTAGAAACCCCAGTAAATAAACTATTTATCCGCATCTGCAGAGAATTACACGAAGATGGGTCTCCTCACCTGCATGTGCTCATCCAATTCGAAGGAAAATTCCAGTGTAAAAATCAAAGATTCTTCGATCTCACATCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGCAGCTAAAAGCTCAACAGATGTCAAGTCCTACATGGACAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTTCGGCCCTCAATATACTAAAGGAGAAAGCTCCTAAAGATTATGTTTTACAATTTCATAATTTAAATAATAATTTAGATAGGATTTTTACTCCTCAGATGGAGGTTTATGTTTCGCCTTTTTCTTCTTCTTCGTTTGATCGAGTTCCAGAGGAACTCGAAGACTGGGCTGCAGAGAACGTCGTCAGTTCCGCTGCGCGGCCATTACGACCAATAAGTATAGTTATCGAAGGCGATAGTCGGACGGGGAAGACGATGTGGGCCAGGTCATTAGGACGCCATAATTATTTGTGTGGTCATCTTGATTTGAGTCCAAAGGTATACAATAATGACGCCTGGTACAACGTCATTGATGACGTAGATCCGCACTACCTAAAGCATTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACAAAGTACGGAAAGCCTGTTCAAATTAAAGGTGGCATTCCCGCTATCTTCCTATGCAATCCAGGGCCCAACTCAAGCTATAAAGAATACCTAGACGAGGAAAAGAATACTGCATTAAAGTCGTGGGCAATAAAAAATGCAGTCTTCGTCAGCATCACCGAGCCACTGTACTCAAGTACCTATCAAAGTCCAGCACAGGATAGCCAAGAAGAAAATAACCAGGAGACGGAGGATTGA
Protein Sequence MAPPNKFRINAKNYFLTYPHCSLTKEEALSQIKTLETPVNKLFIRICRELHEDGSPHLHVLIQFEGKFQCKNQRFFDLTSPSRSAHFHPNIQAAKSSTDVKSYMDKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKASALNILKEKAPKDYVLQFHNLNNNLDRIFTPQMEVYVSPFSSSSFDRVPEELEDWAAENVVSSAARPLRPISIVIEGDSRTGKTMWARSLGRHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEYLDEEKNTALKSWAIKNAVFVSITEPLYSSTYQSPAQDSQEENNQETED

NCBI Accession NP_955742.1
Location 2151-2444
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGTCTCCTCACCTGCATGTGCTCATCCAATTCGAAGGAAAATTCCAGTGTAAAAATCAAAGATTCTTCGATCTCACATCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGCAGCTAAAAGCTCAACAGATGTCAAGTCCTACATGGACAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTTCGGCCCTCAATATACTAA
Protein Sequence MGLLTCMCSSNSKENSSVKIKDSSISHPQAGQHISIRTFRQLKAQQMSSPTWTKTETCLIMEFSRSMEDRLEEVANLPTTHMPRQSIQGPKLRPSIY

References More References in PubMed

1

Tomato leaf curl New Delhi virus: an emerging plant begomovirus threatening cucurbit production.

Cai L, et al.  aBIOTECH. 2023 Oct 25;4(3):257-266. doi: 10.1007/s42994-023-00118-4. eCollection 2023 Sep.

PMID: 37970471
2

Distinct tomato yellow leaf curl Chuxiong virus isolated from whiteflies and plants in China and its symptom determinant and suppressor of post-transcriptional gene silencing.

Xie Y, et al.  Virology. 2024 Jun;594:110040. doi: 10.1016/j.virol.2024.110040. Epub 2024 Mar 5.

PMID: 38471198
3

Tomato yellow leaf curl viruses: menage a trois between the virus complex, the plant and the whitefly vector.

Díaz-Pendón JA, et al.  Mol Plant Pathol. 2010 Jul;11(4):441-50. doi: 10.1111/j.1364-3703.2010.00618.x.

PMID: 20618703
4

Resistance to Tomato Yellow Leaf Curl Virus in Tomato Germplasm.

Yan Z, et al.  Front Plant Sci. 2018 Aug 20;9:1198. doi: 10.3389/fpls.2018.01198. eCollection 2018.

PMID: 30177938
5

A rapid detection of tomato yellow leaf curl virus using recombinase polymerase amplification-lateral flow dipstick assay.

Zhou Y, et al.  Lett Appl Microbiol. 2022 May;74(5):640-646. doi: 10.1111/lam.13611. Epub 2021 Dec 14.

PMID: 34822723
6

Natural resistance of tomato plants to Tomato yellow leaf curl virus.

H El-Sappah A, et al.  Front Plant Sci. 2022 Dec 19;13:1081549. doi: 10.3389/fpls.2022.1081549. eCollection 2022.

PMID: 36600922
7

Tomato Yellow Leaf Curl China Virus Impairs Photosynthesis in the Infected Nicotiana benthamiana with betaC1 as an Aggravating Factor.

Farooq T, et al.  Plant Pathol J. 2019 Oct;35(5):521-529. doi: 10.5423/PPJ.OA.04.2019.0120. Epub 2019 Oct 1.

PMID: 31632226
8

Tomato yellow leaf curl virus: Characteristics, influence, and regulation mechanism.

Cao X, et al.  Plant Physiol Biochem. 2024 Aug;213:108812. doi: 10.1016/j.plaphy.2024.108812. Epub 2024 Jun 8.

PMID: 38875781
9

Detecting Tomato Leaf Curl New Delhi Virus Causing Ridge Gourd Yellow Mosaic Disease, and Other Begomoviruses by Antibody-Based Methods.

Naganur P, et al.  Plants (Basel). 2023 Jan 20;12(3):490. doi: 10.3390/plants12030490.

PMID: 36771575
10

Hrip1 enhances tomato resistance to yellow leaf curl virus by manipulating the phenylpropanoid biosynthesis and plant hormone pathway.

Dong Y, et al.  3 Biotech. 2023 Jan;13(1):11. doi: 10.1007/s13205-022-03426-6. Epub 2022 Dec 16.

PMID: 36532856