Tomato leaf curl Burkina Faso virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_002005645.1
Isolate Burkina Faso
Release date 2017/2/23
Submitter Ouattara,A., Tiendrebeogo,F., Lefeuvre,P., Claverie,S., Hoareau,M., Traore,E.V., Barro,N., Traore,O., Lett,J.M., Lett,J.-M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_033779
ACCGGATGGCCGCGCCCCCCAAAAAAGAAACTGGCCCCACGCACTAATTTTTGTCGACCAATCATATCTCTTCCTGGAAGGTTAGATATTTGTTTTTGTCTCTATATACTTCCTCCGCAAGTTTGGGCCCTGTCCAACATGTGGGATCCACTTTTGAATGAGTTCCCCGATTCTGTTCACGGATTTCGTTGTATGCTAGCTATCAAATATTTGCAGGCCGTCGAGGAAACGTACGAGCCCAATACTTTGGGCCACGATTTAATTAGGGATCTGATCTCTGTCGTTAGGGCTCGAGATTATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGTTGTCCCCATTGCCCCAGGCACAAACAGGCGTCGATCATGGACTTACCGCCCCATGTATCGAAAGCCTCGGATGTACAGAATGTTCAGAAGTCCTGATGTTCCTCGTGGTTGCGAGGGCCCTTGTAAGGTTCAGTCGTATGAGCAGAGGGATGATGTTAAGCACACTGGTATCGTTCGTTGCGTTAGTGATGTCACACGTGGTTCTGGTATTACTCATCGTGTCGGAAAAAGATTTTGTATTAAATCGATATATGTTCTTGGAAAGGTCTGGATGGATGAAAATATTAAGAAGCAGAATCATACTAATCAGGTTATGTTCTTTTTAGTTCGTGATAGACGTCCCTATGGGAATAGCCCGATGGATTTTGGTCAGGTTTTTAATATGTTCGATAATGAGCCCAGTACTGCTACTGTGAAGAATGATTTGCGTGACAGATATCAAGTCTTGAGGAAATTTCATGCTACTGTGATAGGTGGACCCTCGGGCATGAAAGAGCAGGCTTTAGTTAAGAGATTTTTTAGGGTTAACACTCATGTTGTTTACAATCACCAGGAAGCAGCAAAATACGAGAATCATACGGAGAACGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAATCCTGTGTATGCAACATTGAAGATACGCATCTATTTTTATGATGCTGTTACTAATTAATAAATATTGAATTTTATTTCATGATTTTCCGTAACGGAAATTGTGTTTACAAGTACGTTATATAATACATGATCAACTGCTCTAATTACATTATTAATTGAAATTACTTCTAAATGCTTCAGATGCTTGAGAACTTGGAATTTAAAGACCCTTAAGAAAAGACCAGTCTGAGGCCGTAAGGTCGTCCAGACTTTGAAGTTGAGAAAACATTTGTGAATCCCCAGTGCCCTCCTGAGGTTGTGATTGAACCGTATCTGTAATGTGATGATGTCCTGGTTCATGTTGAATGGCCTGATGTCGTGTCTTGTTATCGTGAAATATAGGGGATTGTTTATCTCCGAGATAAACACGCCATTCTTTGCTTGATGAGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTTGATGCAGTCGATGTGGAGGTAGTATGAACAGCCGCAGTCTAGGTCTACTCGTTTACGTCTCACTGCTTTCTTCTTGGCCGCTCTGTGTTGTACTTTGATTGGTACCTGTGAACAATGGGTTGTCGATGGTGACGAAGATCGCATTTTTAATAGCCCAGGCTCTTAGTGCTGCGTTTTTTTCCTCGTCGAGATATTCTTTATATGAGGATGTTGGCCCTGGATTGCATAGAAAGATTGTGGGAATCCCGCCTTTAATTTGGATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCTCGTTGGGCACCCATAAATTCCTTGAAGTGCTTTAGATAGTGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCGTTGCTGTAGACCTTTGGGCTTAGGTCAAGGTGTCCACATAAGTAGTTATGTGGGCCTAGAGAACGGGCCCATATGGTCTTCCCGGTCCGGCTTTCTCCCTCAATGACAATACTGTTGGGCCTCCAGGGCCGCGCAGCGGAAGGCATGACGTTCTCAGAAACCCATGTCTCAAGTTCCTCCGGAACTTGATCGAAAGAAGAAGAAGAAAAAGGAGAAATATAAGGAGCCGGAGGCTCTTCAAAAATCCTATCTAAATTATTATTTAAATTATGAAATTGTAAAATAAAATCTTTAGGGGCTAATTCCCTTATTACATTAAGAGCCGCCGGCTTACTTCCTGCGTTAAGTGCTTTTGCGTAAGCGTCGTTGGCTGATTGCTGCCCGCCCCTTGCAGATCGTCCGTCGATCTGGAATTCTCCCCATTCGAGTGTATCGCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACGAGGTCGAAGAATCTCTGATTTTGGCAGTTGAATTTTCCTTCGAACTGCAGAAGCACATGTAAATGAGGTTCGCCATCTTCGTGCAACTCTCTGCAGATTTTAATGTATTTTTTATTTGTTGGGGTTTGGAGTTTAAGTAGTTGTTCGAGGGCTTCGTCTTTGGTTAGAGAACATTTTGGGAAAGTAAGGAAATAATTTTTGGAATTAACTCTAAAACGCTTTGGAGGAGCCATTTGGTCAACTAGCACCGATTGACTGCCTCAGCTCTCTATCCCGAGCAATTGGGGTTTGGGGTCTTATTTATAGTGTAGCCCCAAATGGCATTTTGGGAATTTAGTAAAGTTCCTTCCTCGTTAATTCGAAATTCAAATTTCGAATTCCCCTAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009345713.1
Location 139-489
Protein Name movement protein
Coding Region ATGTGGGATCCACTTTTGAATGAGTTCCCCGATTCTGTTCACGGATTTCGTTGTATGCTAGCTATCAAATATTTGCAGGCCGTCGAGGAAACGTACGAGCCCAATACTTTGGGCCACGATTTAATTAGGGATCTGATCTCTGTCGTTAGGGCTCGAGATTATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGTTGTCCCCATTGCCCCAGGCACAAACAGGCGTCGATCATGGACTTACCGCCCCATGTATCGAAAGCCTCGGATGTACAGAATGTTCAGAAGTCCTGA
Protein Sequence MWDPLLNEFPDSVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDLISVVRARDYVEATRRYNHFHARLEGSSKAELRQPIQQPCCCPHCPRHKQASIMDLPPHVSKASDVQNVQKS

NCBI Accession YP_009345714.1
Location 299-1075
Protein Name coat protein
Coding Region ATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGTTGTCCCCATTGCCCCAGGCACAAACAGGCGTCGATCATGGACTTACCGCCCCATGTATCGAAAGCCTCGGATGTACAGAATGTTCAGAAGTCCTGATGTTCCTCGTGGTTGCGAGGGCCCTTGTAAGGTTCAGTCGTATGAGCAGAGGGATGATGTTAAGCACACTGGTATCGTTCGTTGCGTTAGTGATGTCACACGTGGTTCTGGTATTACTCATCGTGTCGGAAAAAGATTTTGTATTAAATCGATATATGTTCTTGGAAAGGTCTGGATGGATGAAAATATTAAGAAGCAGAATCATACTAATCAGGTTATGTTCTTTTTAGTTCGTGATAGACGTCCCTATGGGAATAGCCCGATGGATTTTGGTCAGGTTTTTAATATGTTCGATAATGAGCCCAGTACTGCTACTGTGAAGAATGATTTGCGTGACAGATATCAAGTCTTGAGGAAATTTCATGCTACTGTGATAGGTGGACCCTCGGGCATGAAAGAGCAGGCTTTAGTTAAGAGATTTTTTAGGGTTAACACTCATGTTGTTTACAATCACCAGGAAGCAGCAAAATACGAGAATCATACGGAGAACGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAATCCTGTGTATGCAACATTGAAGATACGCATCTATTTTTATGATGCTGTTACTAATTAA
Protein Sequence MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAVVPIAPGTNRRRSWTYRPMYRKPRMYRMFRSPDVPRGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGSGITHRVGKRFCIKSIYVLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDNEPSTATVKNDLRDRYQVLRKFHATVIGGPSGMKEQALVKRFFRVNTHVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN

NCBI Accession YP_009345715.1
Location 1072-1476
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAACCCATCACTGCTCATCAAGCAAAGAATGGCGTGTTTATCTCGGAGATAAACAATCCCCTATATTTCACGATAACAAGACACGACATCAGGCCATTCAACATGAACCAGGACATCATCACATTACAGATACGGTTCAATCACAACCTCAGGAGGGCACTGGGGATTCACAAATGTTTTCTCAACTTCAAAGTCTGGACGACCTTACGGCCTCAGACTGGTCTTTTCTTAAGGGTCTTTAAATTCCAAGTTCTCAAGCATCTGAAGCATTTAGAAGTAATTTCAATTAATAATGTAATTAGAGCAGTTGATCATGTATTATATAACGTACTTGTAAACACAATTTCCGTTACGGAAAATCATGAAATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGEPITAHQAKNGVFISEINNPLYFTITRHDIRPFNMNQDIITLQIRFNHNLRRALGIHKCFLNFKVWTTLRPQTGLFLRVFKFQVLKHLKHLEVISINNVIRAVDHVLYNVLVNTISVTENHEIKFNIY

NCBI Accession YP_009345716.1
Location 1217-1624
Protein Name transcriptional activator protein
Coding Region ATGCGATCTTCGTCACCATCGACAACCCATTGTTCACAGGTACCAATCAAAGTACAACACAGAGCGGCCAAGAAGAAAGCAGTGAGACGTAAACGAGTAGACCTAGACTGCGGCTGTTCATACTACCTCCACATCGACTGCATCAACCATGGATTCACGCACAGGGGAACCCATCACTGCTCATCAAGCAAAGAATGGCGTGTTTATCTCGGAGATAAACAATCCCCTATATTTCACGATAACAAGACACGACATCAGGCCATTCAACATGAACCAGGACATCATCACATTACAGATACGGTTCAATCACAACCTCAGGAGGGCACTGGGGATTCACAAATGTTTTCTCAACTTCAAAGTCTGGACGACCTTACGGCCTCAGACTGGTCTTTTCTTAAGGGTCTTTAA
Protein Sequence MRSSSPSTTHCSQVPIKVQHRAAKKKAVRRKRVDLDCGCSYYLHIDCINHGFTHRGTHHCSSSKEWRVYLGDKQSPIFHDNKTRHQAIQHEPGHHHITDTVQSQPQEGTGDSQMFSQLQSLDDLTASDWSFLKGL

NCBI Accession YP_009345717.1
Location 1533-2612
Protein Name replication associated protein
Coding Region ATGGCTCCTCCAAAGCGTTTTAGAGTTAATTCCAAAAATTATTTCCTTACTTTCCCAAAATGTTCTCTAACCAAAGACGAAGCCCTCGAACAACTACTTAAACTCCAAACCCCAACAAATAAAAAATACATTAAAATCTGCAGAGAGTTGCACGAAGATGGCGAACCTCATTTACATGTGCTTCTGCAGTTCGAAGGAAAATTCAACTGCCAAAATCAGAGATTCTTCGACCTCGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGCGATACACTCGAATGGGGAGAATTCCAGATCGACGGACGATCTGCAAGGGGCGGGCAGCAATCAGCCAACGACGCTTACGCAAAAGCACTTAACGCAGGAAGTAAGCCGGCGGCTCTTAATGTAATAAGGGAATTAGCCCCTAAAGATTTTATTTTACAATTTCATAATTTAAATAATAATTTAGATAGGATTTTTGAAGAGCCTCCGGCTCCTTATATTTCTCCTTTTTCTTCTTCTTCTTTCGATCAAGTTCCGGAGGAACTTGAGACATGGGTTTCTGAGAACGTCATGCCTTCCGCTGCGCGGCCCTGGAGGCCCAACAGTATTGTCATTGAGGGAGAAAGCCGGACCGGGAAGACCATATGGGCCCGTTCTCTAGGCCCACATAACTACTTATGTGGACACCTTGACCTAAGCCCAAAGGTCTACAGCAACGATGCGTGGTACAACGTCATTGATGACGTAGACCCGCACTATCTAAAGCACTTCAAGGAATTTATGGGTGCCCAACGAGACTGGCAAAGCAACACAAAGTACGGGAAACCAATCCAAATTAAAGGCGGGATTCCCACAATCTTTCTATGCAATCCAGGGCCAACATCCTCATATAAAGAATATCTCGACGAGGAAAAAAACGCAGCACTAAGAGCCTGGGCTATTAAAAATGCGATCTTCGTCACCATCGACAACCCATTGTTCACAGGTACCAATCAAAGTACAACACAGAGCGGCCAAGAAGAAAGCAGTGAGACGTAA
Protein Sequence MAPPKRFRVNSKNYFLTFPKCSLTKDEALEQLLKLQTPTNKKYIKICRELHEDGEPHLHVLLQFEGKFNCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQSANDAYAKALNAGSKPAALNVIRELAPKDFILQFHNLNNNLDRIFEEPPAPYISPFSSSSFDQVPEELETWVSENVMPSAARPWRPNSIVIEGESRTGKTIWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNAALRAWAIKNAIFVTIDNPLFTGTNQSTTQSGQEESSET

NCBI Accession YP_009345718.1
Location 2165-2455
Protein Name C4 protein
Coding Region ATGGCGAACCTCATTTACATGTGCTTCTGCAGTTCGAAGGAAAATTCAACTGCCAAAATCAGAGATTCTTCGACCTCGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGCGATACACTCGAATGGGGAGAATTCCAGATCGACGGACGATCTGCAAGGGGCGGGCAGCAATCAGCCAACGACGCTTACGCAAAAGCACTTAACGCAGGAAGTAAGCCGGCGGCTCTTAATGTAA
Protein Sequence MANLIYMCFCSSKENSTAKIRDSSTSYPQPGQHISIRTFRELNPAPTSSPTSTRTAIHSNGENSRSTDDLQGAGSNQPTTLTQKHLTQEVSRRLLM

References More References in PubMed

1

Tomato leaf curl Burkina Faso virus: a novel tomato-infecting monopartite begomovirus from Burkina Faso.

Ouattara A, et al.  Arch Virol. 2017 May;162(5):1427-1429. doi: 10.1007/s00705-017-3231-6. Epub 2017 Feb 4.

PMID: 28161765
2

Accumulation and transmission of alphasatellite, betasatellite and tomato yellow leaf curl virus in susceptible and Ty-1-resistant tomato plants.

Conflon D, et al.  Virus Res. 2018 Jul 15;253:124-134. doi: 10.1016/j.virusres.2018.06.003. Epub 2018 Jun 15.

PMID: 29908896
3

Molecular diversity of cotton leaf curl Gezira virus isolates and their satellite DNAs associated with okra leaf curl disease in Burkina Faso.

Tiendrébéogo F, et al.  Virol J. 2010 Feb 23;7:48. doi: 10.1186/1743-422X-7-48.

PMID: 20178575
4

Evolution of African cassava mosaic virus by recombination between bipartite and monopartite begomoviruses.

Tiendrébéogo F, et al.  Virol J. 2012 Mar 14;9:67. doi: 10.1186/1743-422X-9-67.

PMID: 22416906