Tomato leaf curl Burkina Faso virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_002005645.1 |
| Isolate |
Burkina Faso |
| Release date |
2017/2/23 |
| Submitter |
Ouattara,A., Tiendrebeogo,F., Lefeuvre,P., Claverie,S., Hoareau,M., Traore,E.V., Barro,N., Traore,O., Lett,J.M., Lett,J.-M. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCCCCCCAAAAAAGAAACTGGCCCCACGCACTAATTTTTGTCGACCAATCATATCTCTTCCTGGAAGGTTAGATATTTGTTTTTGTCTCTATATACTTCCTCCGCAAGTTTGGGCCCTGTCCAACATGTGGGATCCACTTTTGAATGAGTTCCCCGATTCTGTTCACGGATTTCGTTGTATGCTAGCTATCAAATATTTGCAGGCCGTCGAGGAAACGTACGAGCCCAATACTTTGGGCCACGATTTAATTAGGGATCTGATCTCTGTCGTTAGGGCTCGAGATTATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGTTGTCCCCATTGCCCCAGGCACAAACAGGCGTCGATCATGGACTTACCGCCCCATGTATCGAAAGCCTCGGATGTACAGAATGTTCAGAAGTCCTGATGTTCCTCGTGGTTGCGAGGGCCCTTGTAAGGTTCAGTCGTATGAGCAGAGGGATGATGTTAAGCACACTGGTATCGTTCGTTGCGTTAGTGATGTCACACGTGGTTCTGGTATTACTCATCGTGTCGGAAAAAGATTTTGTATTAAATCGATATATGTTCTTGGAAAGGTCTGGATGGATGAAAATATTAAGAAGCAGAATCATACTAATCAGGTTATGTTCTTTTTAGTTCGTGATAGACGTCCCTATGGGAATAGCCCGATGGATTTTGGTCAGGTTTTTAATATGTTCGATAATGAGCCCAGTACTGCTACTGTGAAGAATGATTTGCGTGACAGATATCAAGTCTTGAGGAAATTTCATGCTACTGTGATAGGTGGACCCTCGGGCATGAAAGAGCAGGCTTTAGTTAAGAGATTTTTTAGGGTTAACACTCATGTTGTTTACAATCACCAGGAAGCAGCAAAATACGAGAATCATACGGAGAACGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAATCCTGTGTATGCAACATTGAAGATACGCATCTATTTTTATGATGCTGTTACTAATTAATAAATATTGAATTTTATTTCATGATTTTCCGTAACGGAAATTGTGTTTACAAGTACGTTATATAATACATGATCAACTGCTCTAATTACATTATTAATTGAAATTACTTCTAAATGCTTCAGATGCTTGAGAACTTGGAATTTAAAGACCCTTAAGAAAAGACCAGTCTGAGGCCGTAAGGTCGTCCAGACTTTGAAGTTGAGAAAACATTTGTGAATCCCCAGTGCCCTCCTGAGGTTGTGATTGAACCGTATCTGTAATGTGATGATGTCCTGGTTCATGTTGAATGGCCTGATGTCGTGTCTTGTTATCGTGAAATATAGGGGATTGTTTATCTCCGAGATAAACACGCCATTCTTTGCTTGATGAGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTTGATGCAGTCGATGTGGAGGTAGTATGAACAGCCGCAGTCTAGGTCTACTCGTTTACGTCTCACTGCTTTCTTCTTGGCCGCTCTGTGTTGTACTTTGATTGGTACCTGTGAACAATGGGTTGTCGATGGTGACGAAGATCGCATTTTTAATAGCCCAGGCTCTTAGTGCTGCGTTTTTTTCCTCGTCGAGATATTCTTTATATGAGGATGTTGGCCCTGGATTGCATAGAAAGATTGTGGGAATCCCGCCTTTAATTTGGATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCTCGTTGGGCACCCATAAATTCCTTGAAGTGCTTTAGATAGTGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCGTTGCTGTAGACCTTTGGGCTTAGGTCAAGGTGTCCACATAAGTAGTTATGTGGGCCTAGAGAACGGGCCCATATGGTCTTCCCGGTCCGGCTTTCTCCCTCAATGACAATACTGTTGGGCCTCCAGGGCCGCGCAGCGGAAGGCATGACGTTCTCAGAAACCCATGTCTCAAGTTCCTCCGGAACTTGATCGAAAGAAGAAGAAGAAAAAGGAGAAATATAAGGAGCCGGAGGCTCTTCAAAAATCCTATCTAAATTATTATTTAAATTATGAAATTGTAAAATAAAATCTTTAGGGGCTAATTCCCTTATTACATTAAGAGCCGCCGGCTTACTTCCTGCGTTAAGTGCTTTTGCGTAAGCGTCGTTGGCTGATTGCTGCCCGCCCCTTGCAGATCGTCCGTCGATCTGGAATTCTCCCCATTCGAGTGTATCGCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACGAGGTCGAAGAATCTCTGATTTTGGCAGTTGAATTTTCCTTCGAACTGCAGAAGCACATGTAAATGAGGTTCGCCATCTTCGTGCAACTCTCTGCAGATTTTAATGTATTTTTTATTTGTTGGGGTTTGGAGTTTAAGTAGTTGTTCGAGGGCTTCGTCTTTGGTTAGAGAACATTTTGGGAAAGTAAGGAAATAATTTTTGGAATTAACTCTAAAACGCTTTGGAGGAGCCATTTGGTCAACTAGCACCGATTGACTGCCTCAGCTCTCTATCCCGAGCAATTGGGGTTTGGGGTCTTATTTATAGTGTAGCCCCAAATGGCATTTTGGGAATTTAGTAAAGTTCCTTCCTCGTTAATTCGAAATTCAAATTTCGAATTCCCCTAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_009345713.1
|
|
Location
|
139-489 |
|
Protein Name
|
movement protein |
|
Coding Region
|
ATGTGGGATCCACTTTTGAATGAGTTCCCCGATTCTGTTCACGGATTTCGTTGTATGCTAGCTATCAAATATTTGCAGGCCGTCGAGGAAACGTACGAGCCCAATACTTTGGGCCACGATTTAATTAGGGATCTGATCTCTGTCGTTAGGGCTCGAGATTATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGTTGTCCCCATTGCCCCAGGCACAAACAGGCGTCGATCATGGACTTACCGCCCCATGTATCGAAAGCCTCGGATGTACAGAATGTTCAGAAGTCCTGA |
|
Protein Sequence
|
MWDPLLNEFPDSVHGFRCMLAIKYLQAVEETYEPNTLGHDLIRDLISVVRARDYVEATRRYNHFHARLEGSSKAELRQPIQQPCCCPHCPRHKQASIMDLPPHVSKASDVQNVQKS |
|
NCBI Accession
|
YP_009345714.1
|
|
Location
|
299-1075 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGTTGTCCCCATTGCCCCAGGCACAAACAGGCGTCGATCATGGACTTACCGCCCCATGTATCGAAAGCCTCGGATGTACAGAATGTTCAGAAGTCCTGATGTTCCTCGTGGTTGCGAGGGCCCTTGTAAGGTTCAGTCGTATGAGCAGAGGGATGATGTTAAGCACACTGGTATCGTTCGTTGCGTTAGTGATGTCACACGTGGTTCTGGTATTACTCATCGTGTCGGAAAAAGATTTTGTATTAAATCGATATATGTTCTTGGAAAGGTCTGGATGGATGAAAATATTAAGAAGCAGAATCATACTAATCAGGTTATGTTCTTTTTAGTTCGTGATAGACGTCCCTATGGGAATAGCCCGATGGATTTTGGTCAGGTTTTTAATATGTTCGATAATGAGCCCAGTACTGCTACTGTGAAGAATGATTTGCGTGACAGATATCAAGTCTTGAGGAAATTTCATGCTACTGTGATAGGTGGACCCTCGGGCATGAAAGAGCAGGCTTTAGTTAAGAGATTTTTTAGGGTTAACACTCATGTTGTTTACAATCACCAGGAAGCAGCAAAATACGAGAATCATACGGAGAACGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAATCCTGTGTATGCAACATTGAAGATACGCATCTATTTTTATGATGCTGTTACTAATTAA |
|
Protein Sequence
|
MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAVVPIAPGTNRRRSWTYRPMYRKPRMYRMFRSPDVPRGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGSGITHRVGKRFCIKSIYVLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDNEPSTATVKNDLRDRYQVLRKFHATVIGGPSGMKEQALVKRFFRVNTHVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN |
|
NCBI Accession
|
YP_009345715.1
|
|
Location
|
1072-1476 |
|
Protein Name
|
replication enhancer protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACCCATCACTGCTCATCAAGCAAAGAATGGCGTGTTTATCTCGGAGATAAACAATCCCCTATATTTCACGATAACAAGACACGACATCAGGCCATTCAACATGAACCAGGACATCATCACATTACAGATACGGTTCAATCACAACCTCAGGAGGGCACTGGGGATTCACAAATGTTTTCTCAACTTCAAAGTCTGGACGACCTTACGGCCTCAGACTGGTCTTTTCTTAAGGGTCTTTAAATTCCAAGTTCTCAAGCATCTGAAGCATTTAGAAGTAATTTCAATTAATAATGTAATTAGAGCAGTTGATCATGTATTATATAACGTACTTGTAAACACAATTTCCGTTACGGAAAATCATGAAATAAAATTCAATATTTATTAA |
|
Protein Sequence
|
MDSRTGEPITAHQAKNGVFISEINNPLYFTITRHDIRPFNMNQDIITLQIRFNHNLRRALGIHKCFLNFKVWTTLRPQTGLFLRVFKFQVLKHLKHLEVISINNVIRAVDHVLYNVLVNTISVTENHEIKFNIY |
|
NCBI Accession
|
YP_009345716.1
|
|
Location
|
1217-1624 |
|
Protein Name
|
transcriptional activator protein |
|
Coding Region
|
ATGCGATCTTCGTCACCATCGACAACCCATTGTTCACAGGTACCAATCAAAGTACAACACAGAGCGGCCAAGAAGAAAGCAGTGAGACGTAAACGAGTAGACCTAGACTGCGGCTGTTCATACTACCTCCACATCGACTGCATCAACCATGGATTCACGCACAGGGGAACCCATCACTGCTCATCAAGCAAAGAATGGCGTGTTTATCTCGGAGATAAACAATCCCCTATATTTCACGATAACAAGACACGACATCAGGCCATTCAACATGAACCAGGACATCATCACATTACAGATACGGTTCAATCACAACCTCAGGAGGGCACTGGGGATTCACAAATGTTTTCTCAACTTCAAAGTCTGGACGACCTTACGGCCTCAGACTGGTCTTTTCTTAAGGGTCTTTAA |
|
Protein Sequence
|
MRSSSPSTTHCSQVPIKVQHRAAKKKAVRRKRVDLDCGCSYYLHIDCINHGFTHRGTHHCSSSKEWRVYLGDKQSPIFHDNKTRHQAIQHEPGHHHITDTVQSQPQEGTGDSQMFSQLQSLDDLTASDWSFLKGL |
|
NCBI Accession
|
YP_009345717.1
|
|
Location
|
1533-2612 |
|
Protein Name
|
replication associated protein |
|
Coding Region
|
ATGGCTCCTCCAAAGCGTTTTAGAGTTAATTCCAAAAATTATTTCCTTACTTTCCCAAAATGTTCTCTAACCAAAGACGAAGCCCTCGAACAACTACTTAAACTCCAAACCCCAACAAATAAAAAATACATTAAAATCTGCAGAGAGTTGCACGAAGATGGCGAACCTCATTTACATGTGCTTCTGCAGTTCGAAGGAAAATTCAACTGCCAAAATCAGAGATTCTTCGACCTCGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGCGATACACTCGAATGGGGAGAATTCCAGATCGACGGACGATCTGCAAGGGGCGGGCAGCAATCAGCCAACGACGCTTACGCAAAAGCACTTAACGCAGGAAGTAAGCCGGCGGCTCTTAATGTAATAAGGGAATTAGCCCCTAAAGATTTTATTTTACAATTTCATAATTTAAATAATAATTTAGATAGGATTTTTGAAGAGCCTCCGGCTCCTTATATTTCTCCTTTTTCTTCTTCTTCTTTCGATCAAGTTCCGGAGGAACTTGAGACATGGGTTTCTGAGAACGTCATGCCTTCCGCTGCGCGGCCCTGGAGGCCCAACAGTATTGTCATTGAGGGAGAAAGCCGGACCGGGAAGACCATATGGGCCCGTTCTCTAGGCCCACATAACTACTTATGTGGACACCTTGACCTAAGCCCAAAGGTCTACAGCAACGATGCGTGGTACAACGTCATTGATGACGTAGACCCGCACTATCTAAAGCACTTCAAGGAATTTATGGGTGCCCAACGAGACTGGCAAAGCAACACAAAGTACGGGAAACCAATCCAAATTAAAGGCGGGATTCCCACAATCTTTCTATGCAATCCAGGGCCAACATCCTCATATAAAGAATATCTCGACGAGGAAAAAAACGCAGCACTAAGAGCCTGGGCTATTAAAAATGCGATCTTCGTCACCATCGACAACCCATTGTTCACAGGTACCAATCAAAGTACAACACAGAGCGGCCAAGAAGAAAGCAGTGAGACGTAA |
|
Protein Sequence
|
MAPPKRFRVNSKNYFLTFPKCSLTKDEALEQLLKLQTPTNKKYIKICRELHEDGEPHLHVLLQFEGKFNCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQSANDAYAKALNAGSKPAALNVIRELAPKDFILQFHNLNNNLDRIFEEPPAPYISPFSSSSFDQVPEELETWVSENVMPSAARPWRPNSIVIEGESRTGKTIWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNAALRAWAIKNAIFVTIDNPLFTGTNQSTTQSGQEESSET |
|
NCBI Accession
|
YP_009345718.1
|
|
Location
|
2165-2455 |
|
Protein Name
|
C4 protein |
|
Coding Region
|
ATGGCGAACCTCATTTACATGTGCTTCTGCAGTTCGAAGGAAAATTCAACTGCCAAAATCAGAGATTCTTCGACCTCGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGCGATACACTCGAATGGGGAGAATTCCAGATCGACGGACGATCTGCAAGGGGCGGGCAGCAATCAGCCAACGACGCTTACGCAAAAGCACTTAACGCAGGAAGTAAGCCGGCGGCTCTTAATGTAA |
|
Protein Sequence
|
MANLIYMCFCSSKENSTAKIRDSSTSYPQPGQHISIRTFRELNPAPTSSPTSTRTAIHSNGENSRSTDDLQGAGSNQPTTLTQKHLTQEVSRRLLM |