Tomato leaf curl Bangladesh virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000840445.1
Isolate Bangladesh
Release date 2015/2/12
Submitter Shih,S.L., Tsai,W.S., Nakhla,M.K., Maxwell,D.P., Rashid,M.H., Green,S.K.
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_004614
ACCGGATGGCCGCGATTTTTTTTAACGTGGGCCCAACAACAAGTGTGATGACAAAGACCTGTTGACCAATGAAAATTGTCCCTCAAAGCTTAATTGTGTCCTGGTCCCCTCTATAAACTTGGTCCCCAAGTTCCCACATTACAAAATGTGGGATCCTTTAGTAAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTTCAGTTAGTAGAAAAGACTTATTCTCCCGACACATTAGGGTACGATTTAATTAGGGATTTAATTTCAGTCATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGAGCATGGGCCAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGCTGTGAAGGCCCATGTAAGGTGCAGTCCTTTGAGTCTAGACATGACATTCAGCATATAGGTAAAGTCATGTGTGTCAGTGATGTTACTCGTGGGACTGGGCTGACCCATCGAGTGGGTAAAAGGTTTTGTGTTAAGTCTGTGTATGTTTTGGGTAAGATATGGATGGACGAAAATATTAAGACCAAGAATCACACCAATAGTGTGATGTTTTTTCTTGTTAGGGATCGTAGGCCTGTTGATAAACCCCAAGACTTTGGAGAAGTGTTTAACATGTTTGATAATGAGCCCAGTACGGCTACTGTGAAGAATGTGCATCGTGACAGGTATCAAGTGCTTCGGAAATGGCATGCAACTGTTACTGGTGGACAGTATGCGTCTAAGGAACAAGCTCTCGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAAGCTGGCAAGTATGAGAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACACATGCCTCTAACCCAGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAATAAATATTGAATTTTATTGAATAAGATTGGTCTACATATACAATATGTTCTAATACATCCCATAATACATGATCAACTGCACGAATTACATTATTAATACTGATAACTCCTAAATTATCTAAATATTTAAACACTTGAGTCTTAAAGACTCTTAAGAAACGACCAGTCTGAGGCTGTGAAGTCATCCAGATTCGGTAGACTAGGAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAACTGAAGTTGGATGATGATGATGTCTCTGTTTGTCAGGAATGGCCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGTGGATTTTGAATCTCCCAGGTAAACACGCCATTCACTGCTTGAGCTGCAGTGATGGGTTCCCCGGTGCGTGAATCCATGATCGTGGCAGGCTAGTGCTATAAAGTATGAACATCCACAAGGGAGATCAACACGACGACGCCTGGTCCCCTTCTTGGCTATCTTGTGCTGCACTTTGATTGGAACCTGAGTAGAGTGCGCCTTCGAGGGTGACGAAGATCGCATTCTTTAAAGCCCAATTCTTGAGTGCAGCATTCTTCTCTTCATCCAAGAACTCTTTATAACTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTAGTGGGGATCGACGTCATCTATGATGTTGAACCAGGCCTCATTATTGTACACCTTTGGGCTAAGGTCTAGATGACCACACAAATAGTTATGCGGTCCCAGTGATCTGGCCCACATCGTCTTCCCCGTTCGACTATCACCCTCTATCACTATACTTATGGGTCTTAAAGGCCGCGCAGCGGCACTGACAACGTTCTCGGCAGCCCATTCTTCAAGTTCCTCCGGAACTTGATCAAAAGAAGATGAATTAAAAGGAGAAACATAAACCTCCACCGGAGGTGTAAAAATCCTATCTAAATTAGCATTTAAATTATGAAACTGTAATACAAAATCTTTGGGAGCCTTCTCCCTTAAAATATTGAGGGCCGCAGCCTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTGCCATCGATCTGGAAAACTCCAAAATCAATGAAGTCTCCGTCTTTCTCCACATAGGCTTTGACATCTGACGCGCTCTTAGCTCCCTGAATGTTCGGATGGAAATTTGCTGACCTGGTTGTGGAAACCAGGTCGAAGAATCTGTTGTTCTGACACTTGAATTTTCCTTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCGTGCAGTTCCCGTGAAACGCGAATGAATAATTTATTAGTAGGTGTGGCGAGGTTTTTTATTTGGGAAAGTGCCTCTTCTTTAGTAAGAGAACATTGTGGATATGTTAAGAAATAATTTTTAGCATATATTTGGAAACGTTTCGGTTGAGGCATGTTGACTTGGTCAATCGGTACTCACCAAACTTGTCTATGCAATCGGTGAATGGTACTCAATATATAGGTGAGTACCGAATGGCACAACTGTAATTACTGAATGTAATTCAAAATTCAAATTCCGACAAAAGCGGCCATCCGCACTAATATT

Gene Information

NCBI Accession NP_803245.1
Location 146-502
Gene Name V2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCTTTAGTAAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTTCAGTTAGTAGAAAAGACTTATTCTCCCGACACATTAGGGTACGATTTAATTAGGGATTTAATTTCAGTCATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGAGCATGGGCCAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAG
Protein Sequence MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGQQAHEQEAQDVQDVQKSRCP

NCBI Accession NP_803246.1
Location 306-1076
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGAGCATGGGCCAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGCTGTGAAGGCCCATGTAAGGTGCAGTCCTTTGAGTCTAGACATGACATTCAGCATATAGGTAAAGTCATGTGTGTCAGTGATGTTACTCGTGGGACTGGGCTGACCCATCGAGTGGGTAAAAGGTTTTGTGTTAAGTCTGTGTATGTTTTGGGTAAGATATGGATGGACGAAAATATTAAGACCAAGAATCACACCAATAGTGTGATGTTTTTTCTTGTTAGGGATCGTAGGCCTGTTGATAAACCCCAAGACTTTGGAGAAGTGTTTAACATGTTTGATAATGAGCCCAGTACGGCTACTGTGAAGAATGTGCATCGTGACAGGTATCAAGTGCTTCGGAAATGGCATGCAACTGTTACTGGTGGACAGTATGCGTCTAAGGAACAAGCTCTCGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAAGCTGGCAAGTATGAGAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACACATGCCTCTAACCCAGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession NP_803247.1
Location 1073-1477
Gene Name C3
Protein Name C3 protein
Coding Region ATGGATTCACGCACCGGGGAACCCATCACTGCAGCTCAAGCAGTGAATGGCGTGTTTACCTGGGAGATTCAAAATCCACTCTATTTCAAGATAACAGAGCACCACAACAGGCCATTCCTGACAAACAGAGACATCATCATCATCCAACTTCAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTCCTAGTCTACCGAATCTGGATGACTTCACAGCCTCAGACTGGTCGTTTCTTAAGAGTCTTTAAGACTCAAGTGTTTAAATATTTAGATAATTTAGGAGTTATCAGTATTAATAATGTAATTCGTGCAGTTGATCATGTATTATGGGATGTATTAGAACATATTGTATATGTAGACCAATCTTATTCAATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGEPITAAQAVNGVFTWEIQNPLYFKITEHHNRPFLTNRDIIIIQLQFNHNLRKALGIHKCFLVYRIWMTSQPQTGRFLRVFKTQVFKYLDNLGVISINNVIRAVDHVLWDVLEHIVYVDQSYSIKFNIY

NCBI Accession NP_803248.1
Location 1218-1622
Gene Name C2
Protein Name C2 protein
Coding Region ATGCGATCTTCGTCACCCTCGAAGGCGCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAAGATAGCCAAGAAGGGGACCAGGCGTCGTCGTGTTGATCTCCCTTGTGGATGTTCATACTTTATAGCACTAGCCTGCCACGATCATGGATTCACGCACCGGGGAACCCATCACTGCAGCTCAAGCAGTGAATGGCGTGTTTACCTGGGAGATTCAAAATCCACTCTATTTCAAGATAACAGAGCACCACAACAGGCCATTCCTGACAAACAGAGACATCATCATCATCCAACTTCAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTCCTAGTCTACCGAATCTGGATGACTTCACAGCCTCAGACTGGTCGTTTCTTAAGAGTCTTTAA
Protein Sequence MRSSSPSKAHSTQVPIKVQHKIAKKGTRRRRVDLPCGCSYFIALACHDHGFTHRGTHHCSSSSEWRVYLGDSKSTLFQDNRAPQQAIPDKQRHHHHPTSVQSQPEESVGDTQMFPSLPNLDDFTASDWSFLKSL

NCBI Accession NP_803249.1
Location 1525-2610
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGCCTCAACCGAAACGTTTCCAAATATATGCTAAAAATTATTTCTTAACATATCCACAATGTTCTCTTACTAAAGAAGAGGCACTTTCCCAAATAAAAAACCTCGCCACACCTACTAATAAATTATTCATTCGCGTTTCACGGGAACTGCACGAAAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAAGGAAAATTCAAGTGTCAGAACAACAGATTCTTCGACCTGGTTTCCACAACCAGGTCAGCAAATTTCCATCCGAACATTCAGGGAGCTAAGAGCGCGTCAGATGTCAAAGCCTATGTGGAGAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAGATCGATGGCAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAGGCTGCGGCCCTCAATATTTTAAGGGAGAAGGCTCCCAAAGATTTTGTATTACAGTTTCATAATTTAAATGCTAATTTAGATAGGATTTTTACACCTCCGGTGGAGGTTTATGTTTCTCCTTTTAATTCATCTTCTTTTGATCAAGTTCCGGAGGAACTTGAAGAATGGGCTGCCGAGAACGTTGTCAGTGCCGCTGCGCGGCCTTTAAGACCCATAAGTATAGTGATAGAGGGTGATAGTCGAACGGGGAAGACGATGTGGGCCAGATCACTGGGACCGCATAACTATTTGTGTGGTCATCTAGACCTTAGCCCAAAGGTGTACAATAATGAGGCCTGGTTCAACATCATAGATGACGTCGATCCCCACTACCTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAATACGGAAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCCAATTCAAGTTATAAAGAGTTCTTGGATGAAGAGAAGAATGCTGCACTCAAGAATTGGGCTTTAAAGAATGCGATCTTCGTCACCCTCGAAGGCGCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAAGATAGCCAAGAAGGGGACCAGGCGTCGTCGTGTTGA
Protein Sequence MPQPKRFQIYAKNYFLTYPQCSLTKEEALSQIKNLATPTNKLFIRVSRELHENGEPHLHVLIQFEGKFKCQNNRFFDLVSTTRSANFHPNIQGAKSASDVKAYVEKDGDFIDFGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILREKAPKDFVLQFHNLNANLDRIFTPPVEVYVSPFNSSSFDQVPEELEEWAAENVVSAAARPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNEAWFNIIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNAALKNWALKNAIFVTLEGALYSGSNQSAAQDSQEGDQASSC

NCBI Accession NP_803250.1
Location 2160-2453
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAAGGAAAATTCAAGTGTCAGAACAACAGATTCTTCGACCTGGTTTCCACAACCAGGTCAGCAAATTTCCATCCGAACATTCAGGGAGCTAAGAGCGCGTCAGATGTCAAAGCCTATGTGGAGAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAGATCGATGGCAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAGGCTGCGGCCCTCAATATTTTAA
Protein Sequence MGNLIFTCSSSSKENSSVRTTDSSTWFPQPGQQISIRTFRELRARQMSKPMWRKTETSLILEFSRSMADQLEEVANLPTTHMPRQSIQGPRLRPSIF

References More References in PubMed

1

Transreplication Preference of the Tomato Leaf Curl Joydebpur Virus for a Noncognate Betasatellite through Iteron Resemblance on Nicotiana bethamiana.

Vo TTB, et al.  Microorganisms. 2023 Dec 1;11(12):2907. doi: 10.3390/microorganisms11122907.

PMID: 38138051
2

Association of tomato leaf curl Gujarat virus and tomato leaf curl Bangladesh betasatellite on papaya showing typical leaf curl symptoms in North India.

Varun P, et al.  3 Biotech. 2018 May;8(5):243. doi: 10.1007/s13205-018-1254-7. Epub 2018 May 8.

PMID: 29744275
3

Molecular Characterization of a Recombinant Isolate of Tomato Leaf Curl New Delhi Virus Associated with Severe Outbreaks in Zucchini Squash in Southern Italy.

Mastrochirico M, et al.  Plants (Basel). 2023 Jun 21;12(13):2399. doi: 10.3390/plants12132399.

PMID: 37446959
4

Occurrence of tomato leaf curl Bangladesh virus and associated subviral DNA molecules in papaya in Bangladesh: molecular detection and characterization.

Hamim I, et al.  Arch Virol. 2019 Jun;164(6):1661-1665. doi: 10.1007/s00705-019-04235-8. Epub 2019 Apr 4.

PMID: 30949815
5

First Report of Tomato leaf curl New Delhi virus Infecting Tomato in Bangladesh.

Maruthi MN, et al.  Plant Dis. 2005 Sep;89(9):1011. doi: 10.1094/PD-89-1011C.

PMID: 30786642
6

Development of a New Molecular Marker for the Resistance to Tomato Yellow Leaf Curl Virus.

Nevame AYM, et al.  Biomed Res Int. 2018 Jul 17;2018:8120281. doi: 10.1155/2018/8120281. eCollection 2018.

PMID: 30105248
7

Prevalence of chilli leaf curl virus and tomato leaf curl New Delhi virus with chilli leaf curl disease in India.

Krishnan N, et al.  Physiol Mol Biol Plants. 2025 Aug;31(8):1363-1374. doi: 10.1007/s12298-025-01570-w. Epub 2025 Mar 7.

PMID: 41080515
8

A distinct strain of tomato leaf curl New Delhi virus that causes mosaic disease in ash gourd and other cucurbitaceous crops.

Vignesh S, et al.  Front Microbiol. 2023 Oct 26;14:1268333. doi: 10.3389/fmicb.2023.1268333. eCollection 2023.

PMID: 37965544
9

Molecular characterization of begomovirus and DNA satellites associated with mosaic and leaf curl disease of Jamaica cherry (Muntingia calabura) in India: Uncovering a new host for chilli leaf curl India virus.

Prasad KSUD, et al.  Virusdisease. 2024 Sep;35(3):484-495. doi: 10.1007/s13337-024-00891-w. Epub 2024 Sep 16.

PMID: 39464737
10

Molecular Characterization of Tomato and Chili Leaf Curl Begomoviruses from Pakistan.

Shih SL, et al.  Plant Dis. 2003 Feb;87(2):200. doi: 10.1094/PDIS.2003.87.2.200A.

PMID: 30812928