Tomato leaf curl Bangladesh virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000840445.1
Isolate Bangladesh
Release date 2015/2/12
Submitter Shih,S.L., Tsai,W.S., Nakhla,M.K., Maxwell,D.P., Rashid,M.H., Green,S.K.
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_004614
ACCGGATGGCCGCGATTTTTTTTAACGTGGGCCCAACAACAAGTGTGATGACAAAGACCTGTTGACCAATGAAAATTGTCCCTCAAAGCTTAATTGTGTCCTGGTCCCCTCTATAAACTTGGTCCCCAAGTTCCCACATTACAAAATGTGGGATCCTTTAGTAAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTTCAGTTAGTAGAAAAGACTTATTCTCCCGACACATTAGGGTACGATTTAATTAGGGATTTAATTTCAGTCATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGAGCATGGGCCAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGCTGTGAAGGCCCATGTAAGGTGCAGTCCTTTGAGTCTAGACATGACATTCAGCATATAGGTAAAGTCATGTGTGTCAGTGATGTTACTCGTGGGACTGGGCTGACCCATCGAGTGGGTAAAAGGTTTTGTGTTAAGTCTGTGTATGTTTTGGGTAAGATATGGATGGACGAAAATATTAAGACCAAGAATCACACCAATAGTGTGATGTTTTTTCTTGTTAGGGATCGTAGGCCTGTTGATAAACCCCAAGACTTTGGAGAAGTGTTTAACATGTTTGATAATGAGCCCAGTACGGCTACTGTGAAGAATGTGCATCGTGACAGGTATCAAGTGCTTCGGAAATGGCATGCAACTGTTACTGGTGGACAGTATGCGTCTAAGGAACAAGCTCTCGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAAGCTGGCAAGTATGAGAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACACATGCCTCTAACCCAGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAATAAATATTGAATTTTATTGAATAAGATTGGTCTACATATACAATATGTTCTAATACATCCCATAATACATGATCAACTGCACGAATTACATTATTAATACTGATAACTCCTAAATTATCTAAATATTTAAACACTTGAGTCTTAAAGACTCTTAAGAAACGACCAGTCTGAGGCTGTGAAGTCATCCAGATTCGGTAGACTAGGAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAACTGAAGTTGGATGATGATGATGTCTCTGTTTGTCAGGAATGGCCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGTGGATTTTGAATCTCCCAGGTAAACACGCCATTCACTGCTTGAGCTGCAGTGATGGGTTCCCCGGTGCGTGAATCCATGATCGTGGCAGGCTAGTGCTATAAAGTATGAACATCCACAAGGGAGATCAACACGACGACGCCTGGTCCCCTTCTTGGCTATCTTGTGCTGCACTTTGATTGGAACCTGAGTAGAGTGCGCCTTCGAGGGTGACGAAGATCGCATTCTTTAAAGCCCAATTCTTGAGTGCAGCATTCTTCTCTTCATCCAAGAACTCTTTATAACTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTAGTGGGGATCGACGTCATCTATGATGTTGAACCAGGCCTCATTATTGTACACCTTTGGGCTAAGGTCTAGATGACCACACAAATAGTTATGCGGTCCCAGTGATCTGGCCCACATCGTCTTCCCCGTTCGACTATCACCCTCTATCACTATACTTATGGGTCTTAAAGGCCGCGCAGCGGCACTGACAACGTTCTCGGCAGCCCATTCTTCAAGTTCCTCCGGAACTTGATCAAAAGAAGATGAATTAAAAGGAGAAACATAAACCTCCACCGGAGGTGTAAAAATCCTATCTAAATTAGCATTTAAATTATGAAACTGTAATACAAAATCTTTGGGAGCCTTCTCCCTTAAAATATTGAGGGCCGCAGCCTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTGCCATCGATCTGGAAAACTCCAAAATCAATGAAGTCTCCGTCTTTCTCCACATAGGCTTTGACATCTGACGCGCTCTTAGCTCCCTGAATGTTCGGATGGAAATTTGCTGACCTGGTTGTGGAAACCAGGTCGAAGAATCTGTTGTTCTGACACTTGAATTTTCCTTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCGTGCAGTTCCCGTGAAACGCGAATGAATAATTTATTAGTAGGTGTGGCGAGGTTTTTTATTTGGGAAAGTGCCTCTTCTTTAGTAAGAGAACATTGTGGATATGTTAAGAAATAATTTTTAGCATATATTTGGAAACGTTTCGGTTGAGGCATGTTGACTTGGTCAATCGGTACTCACCAAACTTGTCTATGCAATCGGTGAATGGTACTCAATATATAGGTGAGTACCGAATGGCACAACTGTAATTACTGAATGTAATTCAAAATTCAAATTCCGACAAAAGCGGCCATCCGCACTAATATT

Gene Information

NCBI Accession NP_803245.1
Location 146-502
Gene Name V2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCTTTAGTAAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTTCAGTTAGTAGAAAAGACTTATTCTCCCGACACATTAGGGTACGATTTAATTAGGGATTTAATTTCAGTCATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGAGCATGGGCCAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAG
Protein Sequence MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGQQAHEQEAQDVQDVQKSRCP

NCBI Accession NP_803246.1
Location 306-1076
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGAGCATGGGCCAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGCTGTGAAGGCCCATGTAAGGTGCAGTCCTTTGAGTCTAGACATGACATTCAGCATATAGGTAAAGTCATGTGTGTCAGTGATGTTACTCGTGGGACTGGGCTGACCCATCGAGTGGGTAAAAGGTTTTGTGTTAAGTCTGTGTATGTTTTGGGTAAGATATGGATGGACGAAAATATTAAGACCAAGAATCACACCAATAGTGTGATGTTTTTTCTTGTTAGGGATCGTAGGCCTGTTGATAAACCCCAAGACTTTGGAGAAGTGTTTAACATGTTTGATAATGAGCCCAGTACGGCTACTGTGAAGAATGTGCATCGTGACAGGTATCAAGTGCTTCGGAAATGGCATGCAACTGTTACTGGTGGACAGTATGCGTCTAAGGAACAAGCTCTCGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAAGCTGGCAAGTATGAGAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACACATGCCTCTAACCCAGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession NP_803247.1
Location 1073-1477
Gene Name C3
Protein Name C3 protein
Coding Region ATGGATTCACGCACCGGGGAACCCATCACTGCAGCTCAAGCAGTGAATGGCGTGTTTACCTGGGAGATTCAAAATCCACTCTATTTCAAGATAACAGAGCACCACAACAGGCCATTCCTGACAAACAGAGACATCATCATCATCCAACTTCAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTCCTAGTCTACCGAATCTGGATGACTTCACAGCCTCAGACTGGTCGTTTCTTAAGAGTCTTTAAGACTCAAGTGTTTAAATATTTAGATAATTTAGGAGTTATCAGTATTAATAATGTAATTCGTGCAGTTGATCATGTATTATGGGATGTATTAGAACATATTGTATATGTAGACCAATCTTATTCAATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGEPITAAQAVNGVFTWEIQNPLYFKITEHHNRPFLTNRDIIIIQLQFNHNLRKALGIHKCFLVYRIWMTSQPQTGRFLRVFKTQVFKYLDNLGVISINNVIRAVDHVLWDVLEHIVYVDQSYSIKFNIY

NCBI Accession NP_803248.1
Location 1218-1622
Gene Name C2
Protein Name C2 protein
Coding Region ATGCGATCTTCGTCACCCTCGAAGGCGCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAAGATAGCCAAGAAGGGGACCAGGCGTCGTCGTGTTGATCTCCCTTGTGGATGTTCATACTTTATAGCACTAGCCTGCCACGATCATGGATTCACGCACCGGGGAACCCATCACTGCAGCTCAAGCAGTGAATGGCGTGTTTACCTGGGAGATTCAAAATCCACTCTATTTCAAGATAACAGAGCACCACAACAGGCCATTCCTGACAAACAGAGACATCATCATCATCCAACTTCAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTCCTAGTCTACCGAATCTGGATGACTTCACAGCCTCAGACTGGTCGTTTCTTAAGAGTCTTTAA
Protein Sequence MRSSSPSKAHSTQVPIKVQHKIAKKGTRRRRVDLPCGCSYFIALACHDHGFTHRGTHHCSSSSEWRVYLGDSKSTLFQDNRAPQQAIPDKQRHHHHPTSVQSQPEESVGDTQMFPSLPNLDDFTASDWSFLKSL

NCBI Accession NP_803249.1
Location 1525-2610
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGCCTCAACCGAAACGTTTCCAAATATATGCTAAAAATTATTTCTTAACATATCCACAATGTTCTCTTACTAAAGAAGAGGCACTTTCCCAAATAAAAAACCTCGCCACACCTACTAATAAATTATTCATTCGCGTTTCACGGGAACTGCACGAAAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAAGGAAAATTCAAGTGTCAGAACAACAGATTCTTCGACCTGGTTTCCACAACCAGGTCAGCAAATTTCCATCCGAACATTCAGGGAGCTAAGAGCGCGTCAGATGTCAAAGCCTATGTGGAGAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAGATCGATGGCAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAGGCTGCGGCCCTCAATATTTTAAGGGAGAAGGCTCCCAAAGATTTTGTATTACAGTTTCATAATTTAAATGCTAATTTAGATAGGATTTTTACACCTCCGGTGGAGGTTTATGTTTCTCCTTTTAATTCATCTTCTTTTGATCAAGTTCCGGAGGAACTTGAAGAATGGGCTGCCGAGAACGTTGTCAGTGCCGCTGCGCGGCCTTTAAGACCCATAAGTATAGTGATAGAGGGTGATAGTCGAACGGGGAAGACGATGTGGGCCAGATCACTGGGACCGCATAACTATTTGTGTGGTCATCTAGACCTTAGCCCAAAGGTGTACAATAATGAGGCCTGGTTCAACATCATAGATGACGTCGATCCCCACTACCTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAATACGGAAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCCAATTCAAGTTATAAAGAGTTCTTGGATGAAGAGAAGAATGCTGCACTCAAGAATTGGGCTTTAAAGAATGCGATCTTCGTCACCCTCGAAGGCGCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAAGATAGCCAAGAAGGGGACCAGGCGTCGTCGTGTTGA
Protein Sequence MPQPKRFQIYAKNYFLTYPQCSLTKEEALSQIKNLATPTNKLFIRVSRELHENGEPHLHVLIQFEGKFKCQNNRFFDLVSTTRSANFHPNIQGAKSASDVKAYVEKDGDFIDFGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILREKAPKDFVLQFHNLNANLDRIFTPPVEVYVSPFNSSSFDQVPEELEEWAAENVVSAAARPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNEAWFNIIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNAALKNWALKNAIFVTLEGALYSGSNQSAAQDSQEGDQASSC

NCBI Accession NP_803250.1
Location 2160-2453
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAAGGAAAATTCAAGTGTCAGAACAACAGATTCTTCGACCTGGTTTCCACAACCAGGTCAGCAAATTTCCATCCGAACATTCAGGGAGCTAAGAGCGCGTCAGATGTCAAAGCCTATGTGGAGAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAGATCGATGGCAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAGGCTGCGGCCCTCAATATTTTAA
Protein Sequence MGNLIFTCSSSSKENSSVRTTDSSTWFPQPGQQISIRTFRELRARQMSKPMWRKTETSLILEFSRSMADQLEEVANLPTTHMPRQSIQGPRLRPSIF

References More References in PubMed

1

Transreplication Preference of the Tomato Leaf Curl Joydebpur Virus for a Noncognate Betasatellite through Iteron Resemblance on Nicotiana bethamiana.

Vo TTB, et al.  Microorganisms. 2023 Dec 1;11(12):2907. doi: 10.3390/microorganisms11122907.

PMID: 38138051
2

Molecular Characterization of a Recombinant Isolate of Tomato Leaf Curl New Delhi Virus Associated with Severe Outbreaks in Zucchini Squash in Southern Italy.

Mastrochirico M, et al.  Plants (Basel). 2023 Jun 21;12(13):2399. doi: 10.3390/plants12132399.

PMID: 37446959
3

Association of tomato leaf curl Gujarat virus and tomato leaf curl Bangladesh betasatellite on papaya showing typical leaf curl symptoms in North India.

Varun P, et al.  3 Biotech. 2018 May;8(5):243. doi: 10.1007/s13205-018-1254-7. Epub 2018 May 8.

PMID: 29744275
4

First Report of Tomato leaf curl New Delhi virus Infecting Tomato in Bangladesh.

Maruthi MN, et al.  Plant Dis. 2005 Sep;89(9):1011. doi: 10.1094/PD-89-1011C.

PMID: 30786642
5

Development of a New Molecular Marker for the Resistance to Tomato Yellow Leaf Curl Virus.

Nevame AYM, et al.  Biomed Res Int. 2018 Jul 17;2018:8120281. doi: 10.1155/2018/8120281. eCollection 2018.

PMID: 30105248
6

Occurrence of tomato leaf curl Bangladesh virus and associated subviral DNA molecules in papaya in Bangladesh: molecular detection and characterization.

Hamim I, et al.  Arch Virol. 2019 Jun;164(6):1661-1665. doi: 10.1007/s00705-019-04235-8. Epub 2019 Apr 4.

PMID: 30949815
7

A distinct strain of tomato leaf curl New Delhi virus that causes mosaic disease in ash gourd and other cucurbitaceous crops.

Vignesh S, et al.  Front Microbiol. 2023 Oct 26;14:1268333. doi: 10.3389/fmicb.2023.1268333. eCollection 2023.

PMID: 37965544
8

Molecular characterization of begomovirus and DNA satellites associated with mosaic and leaf curl disease of Jamaica cherry (Muntingia calabura) in India: Uncovering a new host for chilli leaf curl India virus.

Prasad KSUD, et al.  Virusdisease. 2024 Sep;35(3):484-495. doi: 10.1007/s13337-024-00891-w. Epub 2024 Sep 16.

PMID: 39464737
9

Molecular Characterization of Tomato and Chili Leaf Curl Begomoviruses from Pakistan.

Shih SL, et al.  Plant Dis. 2003 Feb;87(2):200. doi: 10.1094/PDIS.2003.87.2.200A.

PMID: 30812928
10

Prevalence of chilli leaf curl virus and tomato leaf curl New Delhi virus with chilli leaf curl disease in India.

Krishnan N, et al.  Physiol Mol Biol Plants. 2025 Aug;31(8):1363-1374. doi: 10.1007/s12298-025-01570-w. Epub 2025 Mar 7.

PMID: 41080515