Tomato leaf curl Bangladesh virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000840445.1 |
| Isolate |
Bangladesh |
| Release date |
2015/2/12 |
| Submitter |
Shih,S.L., Tsai,W.S., Nakhla,M.K., Maxwell,D.P., Rashid,M.H., Green,S.K. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTTAACGTGGGCCCAACAACAAGTGTGATGACAAAGACCTGTTGACCAATGAAAATTGTCCCTCAAAGCTTAATTGTGTCCTGGTCCCCTCTATAAACTTGGTCCCCAAGTTCCCACATTACAAAATGTGGGATCCTTTAGTAAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTTCAGTTAGTAGAAAAGACTTATTCTCCCGACACATTAGGGTACGATTTAATTAGGGATTTAATTTCAGTCATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGAGCATGGGCCAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGCTGTGAAGGCCCATGTAAGGTGCAGTCCTTTGAGTCTAGACATGACATTCAGCATATAGGTAAAGTCATGTGTGTCAGTGATGTTACTCGTGGGACTGGGCTGACCCATCGAGTGGGTAAAAGGTTTTGTGTTAAGTCTGTGTATGTTTTGGGTAAGATATGGATGGACGAAAATATTAAGACCAAGAATCACACCAATAGTGTGATGTTTTTTCTTGTTAGGGATCGTAGGCCTGTTGATAAACCCCAAGACTTTGGAGAAGTGTTTAACATGTTTGATAATGAGCCCAGTACGGCTACTGTGAAGAATGTGCATCGTGACAGGTATCAAGTGCTTCGGAAATGGCATGCAACTGTTACTGGTGGACAGTATGCGTCTAAGGAACAAGCTCTCGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAAGCTGGCAAGTATGAGAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACACATGCCTCTAACCCAGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAATAAATATTGAATTTTATTGAATAAGATTGGTCTACATATACAATATGTTCTAATACATCCCATAATACATGATCAACTGCACGAATTACATTATTAATACTGATAACTCCTAAATTATCTAAATATTTAAACACTTGAGTCTTAAAGACTCTTAAGAAACGACCAGTCTGAGGCTGTGAAGTCATCCAGATTCGGTAGACTAGGAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAACTGAAGTTGGATGATGATGATGTCTCTGTTTGTCAGGAATGGCCTGTTGTGGTGCTCTGTTATCTTGAAATAGAGTGGATTTTGAATCTCCCAGGTAAACACGCCATTCACTGCTTGAGCTGCAGTGATGGGTTCCCCGGTGCGTGAATCCATGATCGTGGCAGGCTAGTGCTATAAAGTATGAACATCCACAAGGGAGATCAACACGACGACGCCTGGTCCCCTTCTTGGCTATCTTGTGCTGCACTTTGATTGGAACCTGAGTAGAGTGCGCCTTCGAGGGTGACGAAGATCGCATTCTTTAAAGCCCAATTCTTGAGTGCAGCATTCTTCTCTTCATCCAAGAACTCTTTATAACTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTAGTGGGGATCGACGTCATCTATGATGTTGAACCAGGCCTCATTATTGTACACCTTTGGGCTAAGGTCTAGATGACCACACAAATAGTTATGCGGTCCCAGTGATCTGGCCCACATCGTCTTCCCCGTTCGACTATCACCCTCTATCACTATACTTATGGGTCTTAAAGGCCGCGCAGCGGCACTGACAACGTTCTCGGCAGCCCATTCTTCAAGTTCCTCCGGAACTTGATCAAAAGAAGATGAATTAAAAGGAGAAACATAAACCTCCACCGGAGGTGTAAAAATCCTATCTAAATTAGCATTTAAATTATGAAACTGTAATACAAAATCTTTGGGAGCCTTCTCCCTTAAAATATTGAGGGCCGCAGCCTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTGCCATCGATCTGGAAAACTCCAAAATCAATGAAGTCTCCGTCTTTCTCCACATAGGCTTTGACATCTGACGCGCTCTTAGCTCCCTGAATGTTCGGATGGAAATTTGCTGACCTGGTTGTGGAAACCAGGTCGAAGAATCTGTTGTTCTGACACTTGAATTTTCCTTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCGTGCAGTTCCCGTGAAACGCGAATGAATAATTTATTAGTAGGTGTGGCGAGGTTTTTTATTTGGGAAAGTGCCTCTTCTTTAGTAAGAGAACATTGTGGATATGTTAAGAAATAATTTTTAGCATATATTTGGAAACGTTTCGGTTGAGGCATGTTGACTTGGTCAATCGGTACTCACCAAACTTGTCTATGCAATCGGTGAATGGTACTCAATATATAGGTGAGTACCGAATGGCACAACTGTAATTACTGAATGTAATTCAAAATTCAAATTCCGACAAAAGCGGCCATCCGCACTAATATT
Gene Information
|
NCBI Accession
|
NP_803245.1
|
|
Location
|
146-502 |
|
Gene Name
|
V2 |
|
Protein Name
|
pre-coat protein |
|
Coding Region
|
ATGTGGGATCCTTTAGTAAACGAGTTTCCCGAAACCGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTTCAGTTAGTAGAAAAGACTTATTCTCCCGACACATTAGGGTACGATTTAATTAGGGATTTAATTTCAGTCATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGAGCATGGGCCAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAG |
|
Protein Sequence
|
MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGQQAHEQEAQDVQDVQKSRCP |
|
NCBI Accession
|
NP_803246.1
|
|
Location
|
306-1076 |
|
Gene Name
|
V1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGAGCATGGGCCAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGCTGTGAAGGCCCATGTAAGGTGCAGTCCTTTGAGTCTAGACATGACATTCAGCATATAGGTAAAGTCATGTGTGTCAGTGATGTTACTCGTGGGACTGGGCTGACCCATCGAGTGGGTAAAAGGTTTTGTGTTAAGTCTGTGTATGTTTTGGGTAAGATATGGATGGACGAAAATATTAAGACCAAGAATCACACCAATAGTGTGATGTTTTTTCTTGTTAGGGATCGTAGGCCTGTTGATAAACCCCAAGACTTTGGAGAAGTGTTTAACATGTTTGATAATGAGCCCAGTACGGCTACTGTGAAGAATGTGCATCGTGACAGGTATCAAGTGCTTCGGAAATGGCATGCAACTGTTACTGGTGGACAGTATGCGTCTAAGGAACAAGCTCTCGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAAGCTGGCAAGTATGAGAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACACATGCCTCTAACCCAGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAA |
|
Protein Sequence
|
MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
|
NCBI Accession
|
NP_803247.1
|
|
Location
|
1073-1477 |
|
Gene Name
|
C3 |
|
Protein Name
|
C3 protein |
|
Coding Region
|
ATGGATTCACGCACCGGGGAACCCATCACTGCAGCTCAAGCAGTGAATGGCGTGTTTACCTGGGAGATTCAAAATCCACTCTATTTCAAGATAACAGAGCACCACAACAGGCCATTCCTGACAAACAGAGACATCATCATCATCCAACTTCAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTCCTAGTCTACCGAATCTGGATGACTTCACAGCCTCAGACTGGTCGTTTCTTAAGAGTCTTTAAGACTCAAGTGTTTAAATATTTAGATAATTTAGGAGTTATCAGTATTAATAATGTAATTCGTGCAGTTGATCATGTATTATGGGATGTATTAGAACATATTGTATATGTAGACCAATCTTATTCAATAAAATTCAATATTTATTAA |
|
Protein Sequence
|
MDSRTGEPITAAQAVNGVFTWEIQNPLYFKITEHHNRPFLTNRDIIIIQLQFNHNLRKALGIHKCFLVYRIWMTSQPQTGRFLRVFKTQVFKYLDNLGVISINNVIRAVDHVLWDVLEHIVYVDQSYSIKFNIY |
|
NCBI Accession
|
NP_803248.1
|
|
Location
|
1218-1622 |
|
Gene Name
|
C2 |
|
Protein Name
|
C2 protein |
|
Coding Region
|
ATGCGATCTTCGTCACCCTCGAAGGCGCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAAGATAGCCAAGAAGGGGACCAGGCGTCGTCGTGTTGATCTCCCTTGTGGATGTTCATACTTTATAGCACTAGCCTGCCACGATCATGGATTCACGCACCGGGGAACCCATCACTGCAGCTCAAGCAGTGAATGGCGTGTTTACCTGGGAGATTCAAAATCCACTCTATTTCAAGATAACAGAGCACCACAACAGGCCATTCCTGACAAACAGAGACATCATCATCATCCAACTTCAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTCCTAGTCTACCGAATCTGGATGACTTCACAGCCTCAGACTGGTCGTTTCTTAAGAGTCTTTAA |
|
Protein Sequence
|
MRSSSPSKAHSTQVPIKVQHKIAKKGTRRRRVDLPCGCSYFIALACHDHGFTHRGTHHCSSSSEWRVYLGDSKSTLFQDNRAPQQAIPDKQRHHHHPTSVQSQPEESVGDTQMFPSLPNLDDFTASDWSFLKSL |
|
NCBI Accession
|
NP_803249.1
|
|
Location
|
1525-2610 |
|
Gene Name
|
C1 |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGCCTCAACCGAAACGTTTCCAAATATATGCTAAAAATTATTTCTTAACATATCCACAATGTTCTCTTACTAAAGAAGAGGCACTTTCCCAAATAAAAAACCTCGCCACACCTACTAATAAATTATTCATTCGCGTTTCACGGGAACTGCACGAAAATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAAGGAAAATTCAAGTGTCAGAACAACAGATTCTTCGACCTGGTTTCCACAACCAGGTCAGCAAATTTCCATCCGAACATTCAGGGAGCTAAGAGCGCGTCAGATGTCAAAGCCTATGTGGAGAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAGATCGATGGCAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAGGCTGCGGCCCTCAATATTTTAAGGGAGAAGGCTCCCAAAGATTTTGTATTACAGTTTCATAATTTAAATGCTAATTTAGATAGGATTTTTACACCTCCGGTGGAGGTTTATGTTTCTCCTTTTAATTCATCTTCTTTTGATCAAGTTCCGGAGGAACTTGAAGAATGGGCTGCCGAGAACGTTGTCAGTGCCGCTGCGCGGCCTTTAAGACCCATAAGTATAGTGATAGAGGGTGATAGTCGAACGGGGAAGACGATGTGGGCCAGATCACTGGGACCGCATAACTATTTGTGTGGTCATCTAGACCTTAGCCCAAAGGTGTACAATAATGAGGCCTGGTTCAACATCATAGATGACGTCGATCCCCACTACCTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAATACGGAAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCCAATTCAAGTTATAAAGAGTTCTTGGATGAAGAGAAGAATGCTGCACTCAAGAATTGGGCTTTAAAGAATGCGATCTTCGTCACCCTCGAAGGCGCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAAGATAGCCAAGAAGGGGACCAGGCGTCGTCGTGTTGA |
|
Protein Sequence
|
MPQPKRFQIYAKNYFLTYPQCSLTKEEALSQIKNLATPTNKLFIRVSRELHENGEPHLHVLIQFEGKFKCQNNRFFDLVSTTRSANFHPNIQGAKSASDVKAYVEKDGDFIDFGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILREKAPKDFVLQFHNLNANLDRIFTPPVEVYVSPFNSSSFDQVPEELEEWAAENVVSAAARPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNEAWFNIIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNAALKNWALKNAIFVTLEGALYSGSNQSAAQDSQEGDQASSC |
|
NCBI Accession
|
NP_803250.1
|
|
Location
|
2160-2453 |
|
Gene Name
|
C4 |
|
Protein Name
|
C4 protein |
|
Coding Region
|
ATGGGGAACCTCATCTTCACGTGCTCATCCAGTTCGAAGGAAAATTCAAGTGTCAGAACAACAGATTCTTCGACCTGGTTTCCACAACCAGGTCAGCAAATTTCCATCCGAACATTCAGGGAGCTAAGAGCGCGTCAGATGTCAAAGCCTATGTGGAGAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAGATCGATGGCAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAGGCTGCGGCCCTCAATATTTTAA |
|
Protein Sequence
|
MGNLIFTCSSSSKENSSVRTTDSSTWFPQPGQQISIRTFRELRARQMSKPMWRKTETSLILEFSRSMADQLEEVANLPTTHMPRQSIQGPRLRPSIF |