| Genus | Begomovirus | 
|---|---|
| NCBI Assembly | GCF_000839265.1 | 
| Release date | 2015/2/12 | 
| Submitter | Hong,Y.G., Harrison,B.D., Hong,Y. | 
| Download | Genome |GFF3 |PEP |CDS | 
 
            | NCBI Accession | NP_631951.1 | 
|---|---|
| Location | 141-488 | 
| Gene Name | V2 | 
| Protein Name | V2 protein | 
| Coding Region | ATGTGGGATCCACTTACAAATGATTTTCCCGAAACCGTACACGGATTCAGGTGTATGCTTGCTATAAAATACTTGCAGTTGGTAGAAAATACGTATTCCCCCGATTCTTTGGGATACGATCTAATACGTGATTTAATTTCTGTCGTCAGGGCTAAAAGCTATGTCCAAGCGTCCGGCAGATATGATCATTTCCGGGCCCGTCTCGAAGTATCGCCGACTTCTGAGCTCAATCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGGCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTTTACAGGATGTTCAGAGGTCCTGA | 
| Protein Sequence | MWDPLTNDFPETVHGFRCMLAIKYLQLVENTYSPDSLGYDLIRDLISVVRAKSYVQASGRYDHFRARLEVSPTSELNQPIQQACCCPHCPRHKGKGMGQQAHESEAHVLQDVQRS | 
| NCBI Accession | NP_631952.1 | 
|---|---|
| Location | 301-1071 | 
| Gene Name | V1 | 
| Protein Name | V1 (coat protein) | 
| Coding Region | ATGTCCAAGCGTCCGGCAGATATGATCATTTCCGGGCCCGTCTCGAAGTATCGCCGACTTCTGAGCTCAATCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGGCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTTTACAGGATGTTCAGAGGTCCTGATGTTCCTAGAGGCTGTGAGGGTCCATGTAAGGTCCAATCCTTTGAGTCAAGACACGATATAATTCATATAGGGAAGGTCATGTGTATTAGTGATGTCACTCGCGGTACGGGGTTAACACATAGAGTTGGTAAGCGGTTTTGTGTCAAGTCAGTATACGTTTTGGGTAAAATATGGATGGATGAGAATATCAAGACTAAGAATCACACGAATAGTGTTATGTTTTTTCTTGTTCGTGACCGTCGCCCTGTTGATAAGCCACAGGACTTTGGAGATGTGTTCAATATGTTTGACAACGAGCCTAGCACTGCAACTGTGAAGAATATGCATAGAGATCGTTATCAGGTGTTGAGGAAGTGGCATGCAACTGTCACTGGTGGACAGTACGCTTCAAAGGAACAGGCATTAGTGAAGGAGTTTGTTAAGGTTAATAATTACGTTGTTTATAACCAGCAAGAGGCTGGGAAATATGAGAATCATTCTGAGAATGCGTTGATGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACGCTTAAGATTCGTATTTACTTCTACGATTCTGTAACCAATTGA | 
| Protein Sequence | MSKRPADMIISGPVSKYRRLLSSISPYSKRAAVRIVRGTKGKEWANRPMNRKPMFYRMFRGPDVPRGCEGPCKVQSFESRHDIIHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGDVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKEFVKVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN | 
| NCBI Accession | NP_631953.1 | 
|---|---|
| Location | 1074-1478 | 
| Gene Name | C3 | 
| Protein Name | C3 protein | 
| Coding Region | ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAACAGAGAATGGCGTGTTTATCTGGGAAATTCAAAATCCCCTCTATTTCAAGATAACAGAGCACCACAACCGGCCATTCCTGTCGGAGAGAGACATCATCACCGTCCAAATACAATTCAATCACAACTTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAGCCTACCGAATCTGGACGACCTCACAGCCTCTGACTGGTCATTTCTTAAGGGTCTTTAAGTCCCAAGTGCATATATTTTTAAATAATCTAGGAGTTATCAGTATTAACAATGTAAATCGAGCAGTTGATCATGTATTATGGAATGTATTACATCATGTTGTATATGTAGAACAATCATATTCAATAAAATTTAATATTTATTAA | 
| Protein Sequence | MDSRTGEPITAAQTENGVFIWEIQNPLYFKITEHHNRPFLSERDIITVQIQFNHNLRKALGIHKCFLAYRIWTTSQPLTGHFLRVFKSQVHIFLNNLGVISINNVNRAVDHVLWNVLHHVVYVEQSYSIKFNIY | 
| NCBI Accession | NP_631954.1 | 
|---|---|
| Location | 1219-1623 | 
| Gene Name | C2 | 
| Protein Name | C2 protein | 
| Coding Region | ATGCAACCTTCATCACCCTCGAAGGGCCACTCTACTCAGGTTCCAATCAAAGTGCAACACAGCCTAGCCAAGAAGGGGACCAGGCGTCGACGAGTTGATCTCGCGTGCGGCTGTTCATACTTCATATCGTTAGCCTGCAACGACCATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAACAGAGAATGGCGTGTTTATCTGGGAAATTCAAAATCCCCTCTATTTCAAGATAACAGAGCACCACAACCGGCCATTCCTGTCGGAGAGAGACATCATCACCGTCCAAATACAATTCAATCACAACTTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAGCCTACCGAATCTGGACGACCTCACAGCCTCTGACTGGTCATTTCTTAAGGGTCTTTAA | 
| Protein Sequence | MQPSSPSKGHSTQVPIKVQHSLAKKGTRRRRVDLACGCSYFISLACNDHGFTHRGTHHCSSNREWRVYLGNSKSPLFQDNRAPQPAIPVGERHHHRPNTIQSQLEESVGDTQMFSSLPNLDDLTASDWSFLKGL | 
| NCBI Accession | NP_631955.1 | 
|---|---|
| Location | 1526-2608 | 
| Gene Name | C1 | 
| Protein Name | C1 (replication-associated protein) | 
| Coding Region | ATGCCTCGTCCTGGCAGATTTAATATAAATGCAAAAAATTATTTCCTCACATACCCTAAATGTTCTCTTTCCAAAGAGAGGCACCTTTCCCAATTACAAACCGTAAAAACTCCAACTTCTAAATTATTCATTAGAGTGTGTAGAGAGCTTCACGTAGATGGGGAACCTCATCTCCACGTGCTCATCCAGTTCGAAGGAAAATTCCAATGCACAAATAACAGATTCTTCGACCTGGTTTCCCCAACCAGATCAACACATTTCCATCCAAACATTCAGAAAGCTAAGAGCAGTTCAGATGTCAAGGCCTATGTGGAAAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAAATCGATGGCAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTGCGGCCCTCGATATTTTAAGGGAGAAAGCTCCCAAAGATTTTGTATTACAATTTCATAATTTAAATGCTAATTTAGATAGGATTTTTACGCCTTCGGCGGAGGTTTATGTTTCTCCATTTCTTTGTTCTTCATTTGATACAGTTCCAGAGGAACTCCATCATTGGGCTGCAGAAAATGTTGTGGATGCCGCTGCCGCTATTAGGCCCATAAGTATTGTTATTGAAGGTGATAGTCGTACGGGCAAAACCATGTGGGCTAGGTCTTTAGGCCCGCATAATTATCTATGCGGTCATTTGGACTTGAGCCCACGAGTGTACTCAAATGATGCGTGGTACAACGTCATTGATGACGTCGATCCGCATTATCTGAAACACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAATCCAACACAAAATACGGAAAGCCAGTTCAAATTAAAGGAGGCATTCCCACTATCTTTCTCTGCAATCCAGGACCTAACAGCAGTTATAAAGAATTTCTGGACGAAGACAAGAATAACGCACTAAAGCAGTGGGCTCTAAAAAATGCAACCTTCATCACCCTCGAAGGGCCACTCTACTCAGGTTCCAATCAAAGTGCAACACAGCCTAGCCAAGAAGGGGACCAGGCGTCGACGAGTTGA | 
| Protein Sequence | MPRPGRFNINAKNYFLTYPKCSLSKERHLSQLQTVKTPTSKLFIRVCRELHVDGEPHLHVLIQFEGKFQCTNNRFFDLVSPTRSTHFHPNIQKAKSSSDVKAYVEKDGDFIDFGVFQIDGRSARGGQQSANDAYAEAINSGSKAAALDILREKAPKDFVLQFHNLNANLDRIFTPSAEVYVSPFLCSSFDTVPEELHHWAAENVVDAAAAIRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEDKNNALKQWALKNATFITLEGPLYSGSNQSATQPSQEGDQASTS | 
| NCBI Accession | NP_631956.1 | 
|---|---|
| Location | 2158-2451 | 
| Gene Name | C4 | 
| Protein Name | C4 protein | 
| Coding Region | ATGGGGAACCTCATCTCCACGTGCTCATCCAGTTCGAAGGAAAATTCCAATGCACAAATAACAGATTCTTCGACCTGGTTTCCCCAACCAGATCAACACATTTCCATCCAAACATTCAGAAAGCTAAGAGCAGTTCAGATGTCAAGGCCTATGTGGAAAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAAATCGATGGCAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTGCGGCCCTCGATATTTTAA | 
| Protein Sequence | MGNLISTCSSSSKENSNAQITDSSTWFPQPDQHISIQTFRKLRAVQMSRPMWKKTETSLILEFSKSMADQLEEVSNLPTTHMPRQSIQGPKLRPSIF | 
| 1 | Tomato leaf curl Karnataka virus from Bangalore, India, Appears to be a Recombinant Begomovirus. Chatchawankanphanich O, et al. Phytopathology. 2002 Jun;92(6):637-45. doi: 10.1094/PHYTO.2002.92.6.637. PMID: 18944261 | 
|---|---|
| 2 | Vo TTB, et al. Microorganisms. 2023 Dec 1;11(12):2907. doi: 10.3390/microorganisms11122907. PMID: 38138051 | 
| 3 | Bottle gourd IC-0262269, a super-susceptible genotype to tomato leaf curl Palampur virus. Nayaka SN, et al. 3 Biotech. 2024 Jan;14(1):8. doi: 10.1007/s13205-023-03838-y. Epub 2023 Dec 8. PMID: 38074288 | 
| 4 | Tiwari N, et al. Arch Virol. 2010 Aug;155(8):1343-7. doi: 10.1007/s00705-010-0710-4. Epub 2010 Jun 5. PMID: 20526636 | 
| 5 | Muniyappa V, et al. Arch Virol. 2000;145(8):1583-98. doi: 10.1007/s007050070078. PMID: 11003471 | 
| 6 | Evidence for recombination among the tomato leaf curl virus strains/species from Bangalore, India. Kirthi N, et al. Arch Virol. 2002;147(2):255-72. doi: 10.1007/s705-002-8318-8. PMID: 11892687 | 
| 7 | Venkataravanappa V, et al. 3 Biotech. 2020 Jun;10(6):282. doi: 10.1007/s13205-020-02245-x. Epub 2020 Jun 2. PMID: 32550101 | 
| 8 | Arutselvan R, et al. Virusdisease. 2017 Sep;28(3):303-308. doi: 10.1007/s13337-017-0385-5. Epub 2017 Jun 13. PMID: 29291217 | 
| 9 | Kiran GVNSM, et al. 3 Biotech. 2021 Dec;11(12):500. doi: 10.1007/s13205-021-02975-6. Epub 2021 Nov 17. PMID: 34881163 | 
| 10 | Prasad KSUD, et al. Virusdisease. 2024 Sep;35(3):484-495. doi: 10.1007/s13337-024-00891-w. Epub 2024 Sep 16. PMID: 39464737 |