Tomato leaf curl Bangalore virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000839265.1
Release date 2015/2/12
Submitter Hong,Y.G., Harrison,B.D., Hong,Y.
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_003891
ACCGGATGGCCGCGCCTTTCTGTCACTATCATGGTCCCCTCCACTAAATCATTTCCACCAATCATATGTCACGCTGAAAGCTTAATTATTTATTTTTGTCCTTATATAAACTTAGTCGCCAAGTTTTACCATTAAATAAAATGTGGGATCCACTTACAAATGATTTTCCCGAAACCGTACACGGATTCAGGTGTATGCTTGCTATAAAATACTTGCAGTTGGTAGAAAATACGTATTCCCCCGATTCTTTGGGATACGATCTAATACGTGATTTAATTTCTGTCGTCAGGGCTAAAAGCTATGTCCAAGCGTCCGGCAGATATGATCATTTCCGGGCCCGTCTCGAAGTATCGCCGACTTCTGAGCTCAATCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGGCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTTTACAGGATGTTCAGAGGTCCTGATGTTCCTAGAGGCTGTGAGGGTCCATGTAAGGTCCAATCCTTTGAGTCAAGACACGATATAATTCATATAGGGAAGGTCATGTGTATTAGTGATGTCACTCGCGGTACGGGGTTAACACATAGAGTTGGTAAGCGGTTTTGTGTCAAGTCAGTATACGTTTTGGGTAAAATATGGATGGATGAGAATATCAAGACTAAGAATCACACGAATAGTGTTATGTTTTTTCTTGTTCGTGACCGTCGCCCTGTTGATAAGCCACAGGACTTTGGAGATGTGTTCAATATGTTTGACAACGAGCCTAGCACTGCAACTGTGAAGAATATGCATAGAGATCGTTATCAGGTGTTGAGGAAGTGGCATGCAACTGTCACTGGTGGACAGTACGCTTCAAAGGAACAGGCATTAGTGAAGGAGTTTGTTAAGGTTAATAATTACGTTGTTTATAACCAGCAAGAGGCTGGGAAATATGAGAATCATTCTGAGAATGCGTTGATGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACGCTTAAGATTCGTATTTACTTCTACGATTCTGTAACCAATTGATATTAATAAATATTAAATTTTATTGAATATGATTGTTCTACATATACAACATGATGTAATACATTCCATAATACATGATCAACTGCTCGATTTACATTGTTAATACTGATAACTCCTAGATTATTTAAAAATATATGCACTTGGGACTTAAAGACCCTTAAGAAATGACCAGTCAGAGGCTGTGAGGTCGTCCAGATTCGGTAGGCTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAAGTTGTGATTGAATTGTATTTGGACGGTGATGATGTCTCTCTCCGACAGGAATGGCCGGTTGTGGTGCTCTGTTATCTTGAAATAGAGGGGATTTTGAATTTCCCAGATAAACACGCCATTCTCTGTTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTCGTTGCAGGCTAACGATATGAAGTATGAACAGCCGCACGCGAGATCAACTCGTCGACGCCTGGTCCCCTTCTTGGCTAGGCTGTGTTGCACTTTGATTGGAACCTGAGTAGAGTGGCCCTTCGAGGGTGATGAAGGTTGCATTTTTTAGAGCCCACTGCTTTAGTGCGTTATTCTTGTCTTCGTCCAGAAATTCTTTATAACTGCTGTTAGGTCCTGGATTGCAGAGAAAGATAGTGGGAATGCCTCCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTCAGATAATGCGGATCGACGTCATCAATGACGTTGTACCACGCATCATTTGAGTACACTCGTGGGCTCAAGTCCAAATGACCGCATAGATAATTATGCGGGCCTAAAGACCTAGCCCACATGGTTTTGCCCGTACGACTATCACCTTCAATAACAATACTTATGGGCCTAATAGCGGCAGCGGCATCCACAACATTTTCTGCAGCCCAATGATGGAGTTCCTCTGGAACTGTATCAAATGAAGAACAAAGAAATGGAGAAACATAAACCTCCGCCGAAGGCGTAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAATACAAAATCTTTGGGAGCTTTCTCCCTTAAAATATCGAGGGCCGCAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGCTGACCTCCTCTAGCTGATCTGCCATCGATTTGGAAAACTCCAAAATCAATGAAGTCTCCGTCTTTTTCCACATAGGCCTTGACATCTGAACTGCTCTTAGCTTTCTGAATGTTTGGATGGAAATGTGTTGATCTGGTTGGGGAAACCAGGTCGAAGAATCTGTTATTTGTGCATTGGAATTTTCCTTCGAACTGGATGAGCACGTGGAGATGAGGTTCCCCATCTACGTGAAGCTCTCTACACACTCTAATGAATAATTTAGAAGTTGGAGTTTTTACGGTTTGTAATTGGGAAAGGTGCCTCTCTTTGGAAAGAGAACATTTAGGGTATGTGAGGAAATAATTTTTTGCATTTATATTAAATCTGCCAGGACGAGGCATTTTGAATCGGTGGACACTCTAATTCTCTGTATATCGGTGGAATGGTGGACAATATATACCCTGTCCACCAAATGGCATAATTGTAATTACCATTAAAGTTCCAGTCAATATCCCGGAAATTGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession NP_631951.1
Location 141-488
Gene Name V2
Protein Name V2 protein
Coding Region ATGTGGGATCCACTTACAAATGATTTTCCCGAAACCGTACACGGATTCAGGTGTATGCTTGCTATAAAATACTTGCAGTTGGTAGAAAATACGTATTCCCCCGATTCTTTGGGATACGATCTAATACGTGATTTAATTTCTGTCGTCAGGGCTAAAAGCTATGTCCAAGCGTCCGGCAGATATGATCATTTCCGGGCCCGTCTCGAAGTATCGCCGACTTCTGAGCTCAATCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGGCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTTTACAGGATGTTCAGAGGTCCTGA
Protein Sequence MWDPLTNDFPETVHGFRCMLAIKYLQLVENTYSPDSLGYDLIRDLISVVRAKSYVQASGRYDHFRARLEVSPTSELNQPIQQACCCPHCPRHKGKGMGQQAHESEAHVLQDVQRS

NCBI Accession NP_631952.1
Location 301-1071
Gene Name V1
Protein Name V1 (coat protein)
Coding Region ATGTCCAAGCGTCCGGCAGATATGATCATTTCCGGGCCCGTCTCGAAGTATCGCCGACTTCTGAGCTCAATCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGGCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTTTACAGGATGTTCAGAGGTCCTGATGTTCCTAGAGGCTGTGAGGGTCCATGTAAGGTCCAATCCTTTGAGTCAAGACACGATATAATTCATATAGGGAAGGTCATGTGTATTAGTGATGTCACTCGCGGTACGGGGTTAACACATAGAGTTGGTAAGCGGTTTTGTGTCAAGTCAGTATACGTTTTGGGTAAAATATGGATGGATGAGAATATCAAGACTAAGAATCACACGAATAGTGTTATGTTTTTTCTTGTTCGTGACCGTCGCCCTGTTGATAAGCCACAGGACTTTGGAGATGTGTTCAATATGTTTGACAACGAGCCTAGCACTGCAACTGTGAAGAATATGCATAGAGATCGTTATCAGGTGTTGAGGAAGTGGCATGCAACTGTCACTGGTGGACAGTACGCTTCAAAGGAACAGGCATTAGTGAAGGAGTTTGTTAAGGTTAATAATTACGTTGTTTATAACCAGCAAGAGGCTGGGAAATATGAGAATCATTCTGAGAATGCGTTGATGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACGCTTAAGATTCGTATTTACTTCTACGATTCTGTAACCAATTGA
Protein Sequence MSKRPADMIISGPVSKYRRLLSSISPYSKRAAVRIVRGTKGKEWANRPMNRKPMFYRMFRGPDVPRGCEGPCKVQSFESRHDIIHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGDVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKEFVKVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession NP_631953.1
Location 1074-1478
Gene Name C3
Protein Name C3 protein
Coding Region ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAACAGAGAATGGCGTGTTTATCTGGGAAATTCAAAATCCCCTCTATTTCAAGATAACAGAGCACCACAACCGGCCATTCCTGTCGGAGAGAGACATCATCACCGTCCAAATACAATTCAATCACAACTTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAGCCTACCGAATCTGGACGACCTCACAGCCTCTGACTGGTCATTTCTTAAGGGTCTTTAAGTCCCAAGTGCATATATTTTTAAATAATCTAGGAGTTATCAGTATTAACAATGTAAATCGAGCAGTTGATCATGTATTATGGAATGTATTACATCATGTTGTATATGTAGAACAATCATATTCAATAAAATTTAATATTTATTAA
Protein Sequence MDSRTGEPITAAQTENGVFIWEIQNPLYFKITEHHNRPFLSERDIITVQIQFNHNLRKALGIHKCFLAYRIWTTSQPLTGHFLRVFKSQVHIFLNNLGVISINNVNRAVDHVLWNVLHHVVYVEQSYSIKFNIY

NCBI Accession NP_631954.1
Location 1219-1623
Gene Name C2
Protein Name C2 protein
Coding Region ATGCAACCTTCATCACCCTCGAAGGGCCACTCTACTCAGGTTCCAATCAAAGTGCAACACAGCCTAGCCAAGAAGGGGACCAGGCGTCGACGAGTTGATCTCGCGTGCGGCTGTTCATACTTCATATCGTTAGCCTGCAACGACCATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAACAGAGAATGGCGTGTTTATCTGGGAAATTCAAAATCCCCTCTATTTCAAGATAACAGAGCACCACAACCGGCCATTCCTGTCGGAGAGAGACATCATCACCGTCCAAATACAATTCAATCACAACTTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAGCCTACCGAATCTGGACGACCTCACAGCCTCTGACTGGTCATTTCTTAAGGGTCTTTAA
Protein Sequence MQPSSPSKGHSTQVPIKVQHSLAKKGTRRRRVDLACGCSYFISLACNDHGFTHRGTHHCSSNREWRVYLGNSKSPLFQDNRAPQPAIPVGERHHHRPNTIQSQLEESVGDTQMFSSLPNLDDLTASDWSFLKGL

NCBI Accession NP_631955.1
Location 1526-2608
Gene Name C1
Protein Name C1 (replication-associated protein)
Coding Region ATGCCTCGTCCTGGCAGATTTAATATAAATGCAAAAAATTATTTCCTCACATACCCTAAATGTTCTCTTTCCAAAGAGAGGCACCTTTCCCAATTACAAACCGTAAAAACTCCAACTTCTAAATTATTCATTAGAGTGTGTAGAGAGCTTCACGTAGATGGGGAACCTCATCTCCACGTGCTCATCCAGTTCGAAGGAAAATTCCAATGCACAAATAACAGATTCTTCGACCTGGTTTCCCCAACCAGATCAACACATTTCCATCCAAACATTCAGAAAGCTAAGAGCAGTTCAGATGTCAAGGCCTATGTGGAAAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAAATCGATGGCAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTGCGGCCCTCGATATTTTAAGGGAGAAAGCTCCCAAAGATTTTGTATTACAATTTCATAATTTAAATGCTAATTTAGATAGGATTTTTACGCCTTCGGCGGAGGTTTATGTTTCTCCATTTCTTTGTTCTTCATTTGATACAGTTCCAGAGGAACTCCATCATTGGGCTGCAGAAAATGTTGTGGATGCCGCTGCCGCTATTAGGCCCATAAGTATTGTTATTGAAGGTGATAGTCGTACGGGCAAAACCATGTGGGCTAGGTCTTTAGGCCCGCATAATTATCTATGCGGTCATTTGGACTTGAGCCCACGAGTGTACTCAAATGATGCGTGGTACAACGTCATTGATGACGTCGATCCGCATTATCTGAAACACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAATCCAACACAAAATACGGAAAGCCAGTTCAAATTAAAGGAGGCATTCCCACTATCTTTCTCTGCAATCCAGGACCTAACAGCAGTTATAAAGAATTTCTGGACGAAGACAAGAATAACGCACTAAAGCAGTGGGCTCTAAAAAATGCAACCTTCATCACCCTCGAAGGGCCACTCTACTCAGGTTCCAATCAAAGTGCAACACAGCCTAGCCAAGAAGGGGACCAGGCGTCGACGAGTTGA
Protein Sequence MPRPGRFNINAKNYFLTYPKCSLSKERHLSQLQTVKTPTSKLFIRVCRELHVDGEPHLHVLIQFEGKFQCTNNRFFDLVSPTRSTHFHPNIQKAKSSSDVKAYVEKDGDFIDFGVFQIDGRSARGGQQSANDAYAEAINSGSKAAALDILREKAPKDFVLQFHNLNANLDRIFTPSAEVYVSPFLCSSFDTVPEELHHWAAENVVDAAAAIRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEDKNNALKQWALKNATFITLEGPLYSGSNQSATQPSQEGDQASTS

NCBI Accession NP_631956.1
Location 2158-2451
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGGAACCTCATCTCCACGTGCTCATCCAGTTCGAAGGAAAATTCCAATGCACAAATAACAGATTCTTCGACCTGGTTTCCCCAACCAGATCAACACATTTCCATCCAAACATTCAGAAAGCTAAGAGCAGTTCAGATGTCAAGGCCTATGTGGAAAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAAATCGATGGCAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTGCGGCCCTCGATATTTTAA
Protein Sequence MGNLISTCSSSSKENSNAQITDSSTWFPQPDQHISIQTFRKLRAVQMSRPMWKKTETSLILEFSKSMADQLEEVSNLPTTHMPRQSIQGPKLRPSIF

References More References in PubMed

1

Tomato leaf curl Karnataka virus from Bangalore, India, Appears to be a Recombinant Begomovirus.

Chatchawankanphanich O, et al.  Phytopathology. 2002 Jun;92(6):637-45. doi: 10.1094/PHYTO.2002.92.6.637.

PMID: 18944261
2

Transreplication Preference of the Tomato Leaf Curl Joydebpur Virus for a Noncognate Betasatellite through Iteron Resemblance on Nicotiana bethamiana.

Vo TTB, et al.  Microorganisms. 2023 Dec 1;11(12):2907. doi: 10.3390/microorganisms11122907.

PMID: 38138051
3

Bottle gourd IC-0262269, a super-susceptible genotype to tomato leaf curl Palampur virus.

Nayaka SN, et al.  3 Biotech. 2024 Jan;14(1):8. doi: 10.1007/s13205-023-03838-y. Epub 2023 Dec 8.

PMID: 38074288
4

Tomato leaf curl Bangalore virus (ToLCBV): infectivity and enhanced pathogenicity with diverse betasatellites.

Tiwari N, et al.  Arch Virol. 2010 Aug;155(8):1343-7. doi: 10.1007/s00705-010-0710-4. Epub 2010 Jun 5.

PMID: 20526636
5

Tomato leaf curl virus from Bangalore (ToLCV-Ban4): sequence comparison with Indian ToLCV isolates, detection in plants and insects, and vector relationships.

Muniyappa V, et al.  Arch Virol. 2000;145(8):1583-98. doi: 10.1007/s007050070078.

PMID: 11003471
6

Evidence for recombination among the tomato leaf curl virus strains/species from Bangalore, India.

Kirthi N, et al.  Arch Virol. 2002;147(2):255-72. doi: 10.1007/s705-002-8318-8.

PMID: 11892687
7

Characterization of Tomato leaf curl New Delhi virus associated with leaf curl and yellowing disease of Watermelon and development of LAMP assay for its detection.

Venkataravanappa V, et al.  3 Biotech. 2020 Jun;10(6):282. doi: 10.1007/s13205-020-02245-x. Epub 2020 Jun 2.

PMID: 32550101
8

Rapid detection of tomato leaf curl Bengaluru virus through loop mediated isothermal amplification assay.

Arutselvan R, et al.  Virusdisease. 2017 Sep;28(3):303-308. doi: 10.1007/s13337-017-0385-5. Epub 2017 Jun 13.

PMID: 29291217
9

Molecular investigations reveal bitter gourd crop is more susceptible to tomato leaf curl New Delhi virus infection in diverse crop cultivation practices.

Kiran GVNSM, et al.  3 Biotech. 2021 Dec;11(12):500. doi: 10.1007/s13205-021-02975-6. Epub 2021 Nov 17.

PMID: 34881163
10

Molecular characterization of begomovirus and DNA satellites associated with mosaic and leaf curl disease of Jamaica cherry (Muntingia calabura) in India: Uncovering a new host for chilli leaf curl India virus.

Prasad KSUD, et al.  Virusdisease. 2024 Sep;35(3):484-495. doi: 10.1007/s13337-024-00891-w. Epub 2024 Sep 16.

PMID: 39464737