Tomato leaf curl Bangalore virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_000839265.1 |
| Release date | 2015/2/12 |
| Submitter | Hong,Y.G., Harrison,B.D., Hong,Y. |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_003891
ACCGGATGGCCGCGCCTTTCTGTCACTATCATGGTCCCCTCCACTAAATCATTTCCACCAATCATATGTCACGCTGAAAGCTTAATTATTTATTTTTGTCCTTATATAAACTTAGTCGCCAAGTTTTACCATTAAATAAAATGTGGGATCCACTTACAAATGATTTTCCCGAAACCGTACACGGATTCAGGTGTATGCTTGCTATAAAATACTTGCAGTTGGTAGAAAATACGTATTCCCCCGATTCTTTGGGATACGATCTAATACGTGATTTAATTTCTGTCGTCAGGGCTAAAAGCTATGTCCAAGCGTCCGGCAGATATGATCATTTCCGGGCCCGTCTCGAAGTATCGCCGACTTCTGAGCTCAATCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGGCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTTTACAGGATGTTCAGAGGTCCTGATGTTCCTAGAGGCTGTGAGGGTCCATGTAAGGTCCAATCCTTTGAGTCAAGACACGATATAATTCATATAGGGAAGGTCATGTGTATTAGTGATGTCACTCGCGGTACGGGGTTAACACATAGAGTTGGTAAGCGGTTTTGTGTCAAGTCAGTATACGTTTTGGGTAAAATATGGATGGATGAGAATATCAAGACTAAGAATCACACGAATAGTGTTATGTTTTTTCTTGTTCGTGACCGTCGCCCTGTTGATAAGCCACAGGACTTTGGAGATGTGTTCAATATGTTTGACAACGAGCCTAGCACTGCAACTGTGAAGAATATGCATAGAGATCGTTATCAGGTGTTGAGGAAGTGGCATGCAACTGTCACTGGTGGACAGTACGCTTCAAAGGAACAGGCATTAGTGAAGGAGTTTGTTAAGGTTAATAATTACGTTGTTTATAACCAGCAAGAGGCTGGGAAATATGAGAATCATTCTGAGAATGCGTTGATGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACGCTTAAGATTCGTATTTACTTCTACGATTCTGTAACCAATTGATATTAATAAATATTAAATTTTATTGAATATGATTGTTCTACATATACAACATGATGTAATACATTCCATAATACATGATCAACTGCTCGATTTACATTGTTAATACTGATAACTCCTAGATTATTTAAAAATATATGCACTTGGGACTTAAAGACCCTTAAGAAATGACCAGTCAGAGGCTGTGAGGTCGTCCAGATTCGGTAGGCTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAAGTTGTGATTGAATTGTATTTGGACGGTGATGATGTCTCTCTCCGACAGGAATGGCCGGTTGTGGTGCTCTGTTATCTTGAAATAGAGGGGATTTTGAATTTCCCAGATAAACACGCCATTCTCTGTTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTCGTTGCAGGCTAACGATATGAAGTATGAACAGCCGCACGCGAGATCAACTCGTCGACGCCTGGTCCCCTTCTTGGCTAGGCTGTGTTGCACTTTGATTGGAACCTGAGTAGAGTGGCCCTTCGAGGGTGATGAAGGTTGCATTTTTTAGAGCCCACTGCTTTAGTGCGTTATTCTTGTCTTCGTCCAGAAATTCTTTATAACTGCTGTTAGGTCCTGGATTGCAGAGAAAGATAGTGGGAATGCCTCCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTCAGATAATGCGGATCGACGTCATCAATGACGTTGTACCACGCATCATTTGAGTACACTCGTGGGCTCAAGTCCAAATGACCGCATAGATAATTATGCGGGCCTAAAGACCTAGCCCACATGGTTTTGCCCGTACGACTATCACCTTCAATAACAATACTTATGGGCCTAATAGCGGCAGCGGCATCCACAACATTTTCTGCAGCCCAATGATGGAGTTCCTCTGGAACTGTATCAAATGAAGAACAAAGAAATGGAGAAACATAAACCTCCGCCGAAGGCGTAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAATACAAAATCTTTGGGAGCTTTCTCCCTTAAAATATCGAGGGCCGCAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGCTGACCTCCTCTAGCTGATCTGCCATCGATTTGGAAAACTCCAAAATCAATGAAGTCTCCGTCTTTTTCCACATAGGCCTTGACATCTGAACTGCTCTTAGCTTTCTGAATGTTTGGATGGAAATGTGTTGATCTGGTTGGGGAAACCAGGTCGAAGAATCTGTTATTTGTGCATTGGAATTTTCCTTCGAACTGGATGAGCACGTGGAGATGAGGTTCCCCATCTACGTGAAGCTCTCTACACACTCTAATGAATAATTTAGAAGTTGGAGTTTTTACGGTTTGTAATTGGGAAAGGTGCCTCTCTTTGGAAAGAGAACATTTAGGGTATGTGAGGAAATAATTTTTTGCATTTATATTAAATCTGCCAGGACGAGGCATTTTGAATCGGTGGACACTCTAATTCTCTGTATATCGGTGGAATGGTGGACAATATATACCCTGTCCACCAAATGGCATAATTGTAATTACCATTAAAGTTCCAGTCAATATCCCGGAAATTGCGGCCATCCGTATAATATT
Gene Information
| NCBI Accession | NP_631951.1 |
|---|---|
| Location | 141-488 |
| Gene Name | V2 |
| Protein Name | V2 protein |
| Coding Region | ATGTGGGATCCACTTACAAATGATTTTCCCGAAACCGTACACGGATTCAGGTGTATGCTTGCTATAAAATACTTGCAGTTGGTAGAAAATACGTATTCCCCCGATTCTTTGGGATACGATCTAATACGTGATTTAATTTCTGTCGTCAGGGCTAAAAGCTATGTCCAAGCGTCCGGCAGATATGATCATTTCCGGGCCCGTCTCGAAGTATCGCCGACTTCTGAGCTCAATCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGGCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTTTACAGGATGTTCAGAGGTCCTGA |
| Protein Sequence | MWDPLTNDFPETVHGFRCMLAIKYLQLVENTYSPDSLGYDLIRDLISVVRAKSYVQASGRYDHFRARLEVSPTSELNQPIQQACCCPHCPRHKGKGMGQQAHESEAHVLQDVQRS |
| NCBI Accession | NP_631952.1 |
|---|---|
| Location | 301-1071 |
| Gene Name | V1 |
| Protein Name | V1 (coat protein) |
| Coding Region | ATGTCCAAGCGTCCGGCAGATATGATCATTTCCGGGCCCGTCTCGAAGTATCGCCGACTTCTGAGCTCAATCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGGCACAAAGGGAAAGGAATGGGCCAACAGGCCCATGAATCGGAAGCCCATGTTTTACAGGATGTTCAGAGGTCCTGATGTTCCTAGAGGCTGTGAGGGTCCATGTAAGGTCCAATCCTTTGAGTCAAGACACGATATAATTCATATAGGGAAGGTCATGTGTATTAGTGATGTCACTCGCGGTACGGGGTTAACACATAGAGTTGGTAAGCGGTTTTGTGTCAAGTCAGTATACGTTTTGGGTAAAATATGGATGGATGAGAATATCAAGACTAAGAATCACACGAATAGTGTTATGTTTTTTCTTGTTCGTGACCGTCGCCCTGTTGATAAGCCACAGGACTTTGGAGATGTGTTCAATATGTTTGACAACGAGCCTAGCACTGCAACTGTGAAGAATATGCATAGAGATCGTTATCAGGTGTTGAGGAAGTGGCATGCAACTGTCACTGGTGGACAGTACGCTTCAAAGGAACAGGCATTAGTGAAGGAGTTTGTTAAGGTTAATAATTACGTTGTTTATAACCAGCAAGAGGCTGGGAAATATGAGAATCATTCTGAGAATGCGTTGATGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACGCTTAAGATTCGTATTTACTTCTACGATTCTGTAACCAATTGA |
| Protein Sequence | MSKRPADMIISGPVSKYRRLLSSISPYSKRAAVRIVRGTKGKEWANRPMNRKPMFYRMFRGPDVPRGCEGPCKVQSFESRHDIIHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGDVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKEFVKVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
| NCBI Accession | NP_631953.1 |
|---|---|
| Location | 1074-1478 |
| Gene Name | C3 |
| Protein Name | C3 protein |
| Coding Region | ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAACAGAGAATGGCGTGTTTATCTGGGAAATTCAAAATCCCCTCTATTTCAAGATAACAGAGCACCACAACCGGCCATTCCTGTCGGAGAGAGACATCATCACCGTCCAAATACAATTCAATCACAACTTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAGCCTACCGAATCTGGACGACCTCACAGCCTCTGACTGGTCATTTCTTAAGGGTCTTTAAGTCCCAAGTGCATATATTTTTAAATAATCTAGGAGTTATCAGTATTAACAATGTAAATCGAGCAGTTGATCATGTATTATGGAATGTATTACATCATGTTGTATATGTAGAACAATCATATTCAATAAAATTTAATATTTATTAA |
| Protein Sequence | MDSRTGEPITAAQTENGVFIWEIQNPLYFKITEHHNRPFLSERDIITVQIQFNHNLRKALGIHKCFLAYRIWTTSQPLTGHFLRVFKSQVHIFLNNLGVISINNVNRAVDHVLWNVLHHVVYVEQSYSIKFNIY |
| NCBI Accession | NP_631954.1 |
|---|---|
| Location | 1219-1623 |
| Gene Name | C2 |
| Protein Name | C2 protein |
| Coding Region | ATGCAACCTTCATCACCCTCGAAGGGCCACTCTACTCAGGTTCCAATCAAAGTGCAACACAGCCTAGCCAAGAAGGGGACCAGGCGTCGACGAGTTGATCTCGCGTGCGGCTGTTCATACTTCATATCGTTAGCCTGCAACGACCATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAACAGAGAATGGCGTGTTTATCTGGGAAATTCAAAATCCCCTCTATTTCAAGATAACAGAGCACCACAACCGGCCATTCCTGTCGGAGAGAGACATCATCACCGTCCAAATACAATTCAATCACAACTTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAGCCTACCGAATCTGGACGACCTCACAGCCTCTGACTGGTCATTTCTTAAGGGTCTTTAA |
| Protein Sequence | MQPSSPSKGHSTQVPIKVQHSLAKKGTRRRRVDLACGCSYFISLACNDHGFTHRGTHHCSSNREWRVYLGNSKSPLFQDNRAPQPAIPVGERHHHRPNTIQSQLEESVGDTQMFSSLPNLDDLTASDWSFLKGL |
| NCBI Accession | NP_631955.1 |
|---|---|
| Location | 1526-2608 |
| Gene Name | C1 |
| Protein Name | C1 (replication-associated protein) |
| Coding Region | ATGCCTCGTCCTGGCAGATTTAATATAAATGCAAAAAATTATTTCCTCACATACCCTAAATGTTCTCTTTCCAAAGAGAGGCACCTTTCCCAATTACAAACCGTAAAAACTCCAACTTCTAAATTATTCATTAGAGTGTGTAGAGAGCTTCACGTAGATGGGGAACCTCATCTCCACGTGCTCATCCAGTTCGAAGGAAAATTCCAATGCACAAATAACAGATTCTTCGACCTGGTTTCCCCAACCAGATCAACACATTTCCATCCAAACATTCAGAAAGCTAAGAGCAGTTCAGATGTCAAGGCCTATGTGGAAAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAAATCGATGGCAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTGCGGCCCTCGATATTTTAAGGGAGAAAGCTCCCAAAGATTTTGTATTACAATTTCATAATTTAAATGCTAATTTAGATAGGATTTTTACGCCTTCGGCGGAGGTTTATGTTTCTCCATTTCTTTGTTCTTCATTTGATACAGTTCCAGAGGAACTCCATCATTGGGCTGCAGAAAATGTTGTGGATGCCGCTGCCGCTATTAGGCCCATAAGTATTGTTATTGAAGGTGATAGTCGTACGGGCAAAACCATGTGGGCTAGGTCTTTAGGCCCGCATAATTATCTATGCGGTCATTTGGACTTGAGCCCACGAGTGTACTCAAATGATGCGTGGTACAACGTCATTGATGACGTCGATCCGCATTATCTGAAACACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAATCCAACACAAAATACGGAAAGCCAGTTCAAATTAAAGGAGGCATTCCCACTATCTTTCTCTGCAATCCAGGACCTAACAGCAGTTATAAAGAATTTCTGGACGAAGACAAGAATAACGCACTAAAGCAGTGGGCTCTAAAAAATGCAACCTTCATCACCCTCGAAGGGCCACTCTACTCAGGTTCCAATCAAAGTGCAACACAGCCTAGCCAAGAAGGGGACCAGGCGTCGACGAGTTGA |
| Protein Sequence | MPRPGRFNINAKNYFLTYPKCSLSKERHLSQLQTVKTPTSKLFIRVCRELHVDGEPHLHVLIQFEGKFQCTNNRFFDLVSPTRSTHFHPNIQKAKSSSDVKAYVEKDGDFIDFGVFQIDGRSARGGQQSANDAYAEAINSGSKAAALDILREKAPKDFVLQFHNLNANLDRIFTPSAEVYVSPFLCSSFDTVPEELHHWAAENVVDAAAAIRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEDKNNALKQWALKNATFITLEGPLYSGSNQSATQPSQEGDQASTS |
| NCBI Accession | NP_631956.1 |
|---|---|
| Location | 2158-2451 |
| Gene Name | C4 |
| Protein Name | C4 protein |
| Coding Region | ATGGGGAACCTCATCTCCACGTGCTCATCCAGTTCGAAGGAAAATTCCAATGCACAAATAACAGATTCTTCGACCTGGTTTCCCCAACCAGATCAACACATTTCCATCCAAACATTCAGAAAGCTAAGAGCAGTTCAGATGTCAAGGCCTATGTGGAAAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAAATCGATGGCAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTGCGGCCCTCGATATTTTAA |
| Protein Sequence | MGNLISTCSSSSKENSNAQITDSSTWFPQPDQHISIQTFRKLRAVQMSRPMWKKTETSLILEFSKSMADQLEEVSNLPTTHMPRQSIQGPKLRPSIF |
References More References in PubMed
| 1 |
Tiwari N, et al. Arch Virol. 2010 Aug;155(8):1343-7. doi: 10.1007/s00705-010-0710-4. Epub 2010 Jun 5. PMID: 20526636 |
|---|---|
| 2 |
Tomato leaf curl Karnataka virus from Bangalore, India, Appears to be a Recombinant Begomovirus. Chatchawankanphanich O, et al. Phytopathology. 2002 Jun;92(6):637-45. doi: 10.1094/PHYTO.2002.92.6.637. PMID: 18944261 |
| 3 |
Venkataravanappa V, et al. 3 Biotech. 2020 Jun;10(6):282. doi: 10.1007/s13205-020-02245-x. Epub 2020 Jun 2. PMID: 32550101 |
| 4 |
Muniyappa V, et al. Arch Virol. 2000;145(8):1583-98. doi: 10.1007/s007050070078. PMID: 11003471 |
| 5 |
Kiran GVNSM, et al. 3 Biotech. 2021 Dec;11(12):500. doi: 10.1007/s13205-021-02975-6. Epub 2021 Nov 17. PMID: 34881163 |
| 6 |
Arutselvan R, et al. Virusdisease. 2017 Sep;28(3):303-308. doi: 10.1007/s13337-017-0385-5. Epub 2017 Jun 13. PMID: 29291217 |
| 7 |
Evidence for recombination among the tomato leaf curl virus strains/species from Bangalore, India. Kirthi N, et al. Arch Virol. 2002;147(2):255-72. doi: 10.1007/s705-002-8318-8. PMID: 11892687 |
| 8 |
Venkataravanappa V, et al. Iran J Biotechnol. 2019 Jan 11;17(1):e2134. doi: 10.21859/ijb.2134. eCollection 2019 Jan. PMID: 31457044 |
| 9 |
Natural recombination between Tomato yellow leaf curl virus-is and Tomato leaf curl virus. Navas-Castillo J, et al. J Gen Virol. 2000 Nov;81(Pt 11):2797-2801. doi: 10.1099/0022-1317-81-11-2797. PMID: 11038394 |
| 10 |
Suppressors of RNA silencing encoded by tomato leaf curl betasatellites. Shukla R, et al. J Biosci. 2013 Mar;38(1):45-51. doi: 10.1007/s12038-012-9291-6. PMID: 23385812 |