Tomato leaf curl Anjouan virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_002986935.1
Isolate Comoros:Anjouan, Ouani
Release date 2018/8/26
Submitter Lefeuvre,P., Martin,D.P., Hoareau,M., Naze,F., Becker,N., Delatte,H., Reynaud,B., Lett,J.M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_038894
ACCGGATGGCCGCGCCCCGAAAAAAGAAGATGGTCCCTGCGCACCAAATTTTGTCAGCCAATCAGAATTGCGCTTGAAAGCTTGTTATTGTTTTTTTGTCTTTATATACTTGGTCCCCAAGATTTACTCTCAATCAGTATGTGGGATCCACTCTTGAACGATTTCCCAGACTCTGTTCACGGGTTTCGTTGTATGCTTGCCGTTAAATACTTGCAGGCCATAGAAGAAACGTACGAGCCCAATACATTGGGCCACGATCTAATCCGTGATCTCATTTGTGTTATCAGGGCCCGTGACTATGTCGAAGCGACCCGGAGATATACTTATTTCCACTCCCGTCTCGAAAGTGCGTCGAAGGCTGAACTTCGACAGCCCGTTTACCAGCCGTGCTGTTGTCCCCACTGCCCCAGGCATAAGCAGACGTCGCGCATGGACTTACAGGCCCATGTACCGAAAGCCCAAGATATACAGAATGTACAAAAGCCCTGATGTTCCAAAGGGTTGTGAAGGCCCATGTAAGGTCCAATCGTATGAGCAGAGGGATGATGTCAAGCATACCGGTATTGTTCGTTGTGTTAGTGATGTTACGCGTGGTTCGGGTATTACCCATAGAGTTGGCAAGAGGTTTTGTATTAAGTCTATTTACTTTTTAGGGAAGATTTGGATGGATGAAAACATTAAGAAACAAAATCATACTAATCAGGTTATGTTTTTTCTCGTTCGTGATAGAAGGCCATATGGCTCAGCCCCAATGGATTTTGGACAGGTTTTTAACATGTTTGATAATGAGCCCAGTACAGCTACGGTGAAGAATGATTTGAGAGACAGGTTTCAAGTTATGCGCAAATTTCATGCAACTGTTGTTGGTGGACCCTCGGGAATGAAGGAGCAGGCGTTAGTTAAGAGATTTTTTAGGATTAATAGTCATGTAACTTATAATCATCAGGAGGCAGCGAAGTATGAAAATCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCGAATCCAGTGTATGCCACTCTTAAGATACGGATCTATTTCTACGATTCGGTCAGCAATTAATAAATATTGAATTTTATTTCATGATTCTCCGTAACTTGGAGTGTATTTACAAGTACATCATATAATACATAATCAACTGCTTTTATTACAGAATTAATTGAAACTACACCTAATCTATCTAAATACCTTAAAACATGAACTTTAAATACTCTTAAGAAATGACCAGTCTGAGGGCGTAAGCTCGTCCAGACCTTGAAGTTGAGAAAACATTTGTGAATCCCCAATTCCTTCCTTAAGTTGTGGTTGAACCGTATCTGGATTAATAGGATGTCTTGATTCATGTTGAACGGTCGACTGTGGTGGTAGATTATCTTGAAATATAGGGGATTTTGTATCTCCCAGATAAAAACGCCACTCTGCGTTTGAGCTGCAGTGATGATTTCCCCGGTGCGTAAATCCATGGTTGGTGCAGTTTATGTGTAGATAGTATGAGCAGCCACAGTTTAGGTCTATGCGCTTACGTCGAATGGGTGTCTTCTTCGCTATGCGGTGTTTGACCTTGATTGGTATTTGAGAACAGTGGCTCGTGGAGGGTGACGAAGGTTGCATTCTTTGTTGCCCAGGCTTTCAAGGGTGCGTTCTTATCCTCCTCTAAGTATTCTTTATAGGAGGATGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCTCCCATAAATTCTTTAAAGTGTTTTAAATAATGCGGGTCTACGTCATCAATGACGTTATACCACGCATCATTGCTGTACACCTTTGGGCTGAGATCGAGATGACCACACAAATAGTTGTGTGGTCCCAGAGACCTAGCCCACATGGTCTTGCCTGTACGACTATCACCCTCTAATACAATACTCATCGGTCTCCACGGCCGCGCAGCGGCATCCATGACATTCTCCGACACCCAGATTTCAAGTTCTTCTGGAACTTGATCAAAAGAAGAAGTAAGAAAATTGGAAACATATGGATTTGGTGGAGTCATGAAAATTTTATCAGCATTTGCTGACAGGTTATGATATTGTAAGAAGAAAGATTTTGGGTCTTTCTCCTTAATTATCTGAAGTGCCTCTTCCTTCGAAGATGCATTTAGTGCATCTGCGTATACTTGGGCTAGATGCTGGCCCTCCCCCCGTGCACTTCTGGCATCGACCTGGAAAACTCCATAGTCAAGAAATTCCCCTCCTTTCTCAATATAGGCCTTGACATCAGAGGATGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTTGGGATACCAGGTCGAAGAATCTTTGATTTGTGCACTGGAATTTCCCTTCGAATTGGATGAGTACGTGGAGATGAGGCAACCCATCTTGGTGTAGCTCTCTGCAGACTCTTATGAATTTTATATTTGTTGGGTAGGAGAAAGATTTAATTTGGGCTAATGCTTCCTCTTTGGTGATGGAGCACTGAGGATAAGTTATGAAATAATTTTTTGCGTTTATTTTAAAACGACCGGCTCTTGGCATTTTGAGTTGTCGTTTTGAATCGGGGTACACACAACTTACCAGGATATCGGTGTAAAGGGGTACAATATATAGTGTGTACTCCAATGGCATATCTGTAATTTTCAAGATCTACATTCTAAATTTGTAAATTCGAAATTCAAACCCTAAAAGCGGCCATCCGATTAATATT

Gene Information

NCBI Accession YP_009508174.1
Location 139-489
Gene Name v2
Protein Name V2 protein
Coding Region ATGTGGGATCCACTCTTGAACGATTTCCCAGACTCTGTTCACGGGTTTCGTTGTATGCTTGCCGTTAAATACTTGCAGGCCATAGAAGAAACGTACGAGCCCAATACATTGGGCCACGATCTAATCCGTGATCTCATTTGTGTTATCAGGGCCCGTGACTATGTCGAAGCGACCCGGAGATATACTTATTTCCACTCCCGTCTCGAAAGTGCGTCGAAGGCTGAACTTCGACAGCCCGTTTACCAGCCGTGCTGTTGTCCCCACTGCCCCAGGCATAAGCAGACGTCGCGCATGGACTTACAGGCCCATGTACCGAAAGCCCAAGATATACAGAATGTACAAAAGCCCTGA
Protein Sequence MWDPLLNDFPDSVHGFRCMLAVKYLQAIEETYEPNTLGHDLIRDLICVIRARDYVEATRRYTYFHSRLESASKAELRQPVYQPCCCPHCPRHKQTSRMDLQAHVPKAQDIQNVQKP

NCBI Accession YP_009508175.1
Location 299-1075
Gene Name cp
Protein Name coat protein
Coding Region ATGTCGAAGCGACCCGGAGATATACTTATTTCCACTCCCGTCTCGAAAGTGCGTCGAAGGCTGAACTTCGACAGCCCGTTTACCAGCCGTGCTGTTGTCCCCACTGCCCCAGGCATAAGCAGACGTCGCGCATGGACTTACAGGCCCATGTACCGAAAGCCCAAGATATACAGAATGTACAAAAGCCCTGATGTTCCAAAGGGTTGTGAAGGCCCATGTAAGGTCCAATCGTATGAGCAGAGGGATGATGTCAAGCATACCGGTATTGTTCGTTGTGTTAGTGATGTTACGCGTGGTTCGGGTATTACCCATAGAGTTGGCAAGAGGTTTTGTATTAAGTCTATTTACTTTTTAGGGAAGATTTGGATGGATGAAAACATTAAGAAACAAAATCATACTAATCAGGTTATGTTTTTTCTCGTTCGTGATAGAAGGCCATATGGCTCAGCCCCAATGGATTTTGGACAGGTTTTTAACATGTTTGATAATGAGCCCAGTACAGCTACGGTGAAGAATGATTTGAGAGACAGGTTTCAAGTTATGCGCAAATTTCATGCAACTGTTGTTGGTGGACCCTCGGGAATGAAGGAGCAGGCGTTAGTTAAGAGATTTTTTAGGATTAATAGTCATGTAACTTATAATCATCAGGAGGCAGCGAAGTATGAAAATCATACTGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCGAATCCAGTGTATGCCACTCTTAAGATACGGATCTATTTCTACGATTCGGTCAGCAATTAA
Protein Sequence MSKRPGDILISTPVSKVRRRLNFDSPFTSRAVVPTAPGISRRRAWTYRPMYRKPKIYRMYKSPDVPKGCEGPCKVQSYEQRDDVKHTGIVRCVSDVTRGSGITHRVGKRFCIKSIYFLGKIWMDENIKKQNHTNQVMFFLVRDRRPYGSAPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMRKFHATVVGGPSGMKEQALVKRFFRINSHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession YP_009508176.1
Location 1072-1476
Gene Name c3
Protein Name C3 protein
Coding Region ATGGATTTACGCACCGGGGAAATCATCACTGCAGCTCAAACGCAGAGTGGCGTTTTTATCTGGGAGATACAAAATCCCCTATATTTCAAGATAATCTACCACCACAGTCGACCGTTCAACATGAATCAAGACATCCTATTAATCCAGATACGGTTCAACCACAACTTAAGGAAGGAATTGGGGATTCACAAATGTTTTCTCAACTTCAAGGTCTGGACGAGCTTACGCCCTCAGACTGGTCATTTCTTAAGAGTATTTAAAGTTCATGTTTTAAGGTATTTAGATAGATTAGGTGTAGTTTCAATTAATTCTGTAATAAAAGCAGTTGATTATGTATTATATGATGTACTTGTAAATACACTCCAAGTTACGGAGAATCATGAAATAAAATTCAATATTTATTAA
Protein Sequence MDLRTGEIITAAQTQSGVFIWEIQNPLYFKIIYHHSRPFNMNQDILLIQIRFNHNLRKELGIHKCFLNFKVWTSLRPQTGHFLRVFKVHVLRYLDRLGVVSINSVIKAVDYVLYDVLVNTLQVTENHEIKFNIY

NCBI Accession YP_009508177.1
Location 1217-1624
Gene Name c2
Protein Name C2 protein
Coding Region ATGCAACCTTCGTCACCCTCCACGAGCCACTGTTCTCAAATACCAATCAAGGTCAAACACCGCATAGCGAAGAAGACACCCATTCGACGTAAGCGCATAGACCTAAACTGTGGCTGCTCATACTATCTACACATAAACTGCACCAACCATGGATTTACGCACCGGGGAAATCATCACTGCAGCTCAAACGCAGAGTGGCGTTTTTATCTGGGAGATACAAAATCCCCTATATTTCAAGATAATCTACCACCACAGTCGACCGTTCAACATGAATCAAGACATCCTATTAATCCAGATACGGTTCAACCACAACTTAAGGAAGGAATTGGGGATTCACAAATGTTTTCTCAACTTCAAGGTCTGGACGAGCTTACGCCCTCAGACTGGTCATTTCTTAAGAGTATTTAA
Protein Sequence MQPSSPSTSHCSQIPIKVKHRIAKKTPIRRKRIDLNCGCSYYLHINCTNHGFTHRGNHHCSSNAEWRFYLGDTKSPIFQDNLPPQSTVQHESRHPINPDTVQPQLKEGIGDSQMFSQLQGLDELTPSDWSFLKSI

NCBI Accession YP_009508178.1
Location 1533-2702
Gene Name rep
Protein Name replication associated protein
Coding Region ATGCCATTGGAGTACACACTATATATTGTACCCCTTTACACCGATATCCTGGTAAGTTGTGTGTACCCCGATTCAAAACGACAACTCAAAATGCCAAGAGCCGGTCGTTTTAAAATAAACGCAAAAAATTATTTCATAACTTATCCTCAGTGCTCCATCACCAAAGAGGAAGCATTAGCCCAAATTAAATCTTTCTCCTACCCAACAAATATAAAATTCATAAGAGTCTGCAGAGAGCTACACCAAGATGGGTTGCCTCATCTCCACGTACTCATCCAATTCGAAGGGAAATTCCAGTGCACAAATCAAAGATTCTTCGACCTGGTATCCCAAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCATCCTCTGATGTCAAGGCCTATATTGAGAAAGGAGGGGAATTTCTTGACTATGGAGTTTTCCAGGTCGATGCCAGAAGTGCACGGGGGGAGGGCCAGCATCTAGCCCAAGTATACGCAGATGCACTAAATGCATCTTCGAAGGAAGAGGCACTTCAGATAATTAAGGAGAAAGACCCAAAATCTTTCTTCTTACAATATCATAACCTGTCAGCAAATGCTGATAAAATTTTCATGACTCCACCAAATCCATATGTTTCCAATTTTCTTACTTCTTCTTTTGATCAAGTTCCAGAAGAACTTGAAATCTGGGTGTCGGAGAATGTCATGGATGCCGCTGCGCGGCCGTGGAGACCGATGAGTATTGTATTAGAGGGTGATAGTCGTACAGGCAAGACCATGTGGGCTAGGTCTCTGGGACCACACAACTATTTGTGTGGTCATCTCGATCTCAGCCCAAAGGTGTACAGCAATGATGCGTGGTATAACGTCATTGATGACGTAGACCCGCATTATTTAAAACACTTTAAAGAATTTATGGGAGCCCAAAGGGACTGGCAAAGCAACACAAAGTACGGGAAGCCAATTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCAACATCCTCCTATAAAGAATACTTAGAGGAGGATAAGAACGCACCCTTGAAAGCCTGGGCAACAAAGAATGCAACCTTCGTCACCCTCCACGAGCCACTGTTCTCAAATACCAATCAAGGTCAAACACCGCATAGCGAAGAAGACACCCATTCGACGTAA
Protein Sequence MPLEYTLYIVPLYTDILVSCVYPDSKRQLKMPRAGRFKINAKNYFITYPQCSITKEEALAQIKSFSYPTNIKFIRVCRELHQDGLPHLHVLIQFEGKFQCTNQRFFDLVSQTRSAHFHPNIQGAKSSSDVKAYIEKGGEFLDYGVFQVDARSARGEGQHLAQVYADALNASSKEEALQIIKEKDPKSFFLQYHNLSANADKIFMTPPNPYVSNFLTSSFDQVPEELEIWVSENVMDAAARPWRPMSIVLEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLEEDKNAPLKAWATKNATFVTLHEPLFSNTNQGQTPHSEEDTHST

NCBI Accession YP_009508179.1
Location 2222-2455
Gene Name c4
Protein Name C4 protein
Coding Region ATGGGTTGCCTCATCTCCACGTACTCATCCAATTCGAAGGGAAATTCCAGTGCACAAATCAAAGATTCTTCGACCTGGTATCCCAAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCATCCTCTGATGTCAAGGCCTATATTGAGAAAGGAGGGGAATTTCTTGACTATGGAGTTTTCCAGGTCGATGCCAGAAGTGCACGGGGGGAGGGCCAGCATCTAG
Protein Sequence MGCLISTYSSNSKGNSSAQIKDSSTWYPKPGQHISIRTFRELNHPLMSRPILRKEGNFLTMEFSRSMPEVHGGRASI

References More References in PubMed

1

A New Tomato leaf curl virus from Mayotte.

Lett JM, et al.  Plant Dis. 2004 Jun;88(6):681. doi: 10.1094/PDIS.2004.88.6.681B.

PMID: 30812598
2

Tomato leaf curl Mahe virus: a novel tomato-infecting monopartite begomovirus from the Seychelles.

Scussel S, et al.  Arch Virol. 2018 Dec;163(12):3451-3453. doi: 10.1007/s00705-018-4007-3. Epub 2018 Sep 3.

PMID: 30178119
3

Within-host dynamics of the emergence of Tomato yellow leaf curl virus recombinants.

Urbino C, et al.  PLoS One. 2013;8(3):e58375. doi: 10.1371/journal.pone.0058375. Epub 2013 Mar 5.

PMID: 23472190
4

Molecular Characterization of a Begomovirus Associated with Tomato Leaf Curl Disease in Uganda.

Shih SL, et al.  Plant Dis. 2006 Feb;90(2):246. doi: 10.1094/PD-90-0246A.

PMID: 30786424
5

Differential disease phenotype of begomoviruses associated with tobacco leaf curl disease in Comoros.

Thierry M, et al.  Arch Virol. 2012 Mar;157(3):545-50. doi: 10.1007/s00705-011-1199-1. Epub 2011 Dec 21.

PMID: 22187103
6

Complex recombination patterns arising during geminivirus coinfections preserve and demarcate biologically important intra-genome interaction networks.

Martin DP, et al.  PLoS Pathog. 2011 Sep;7(9):e1002203. doi: 10.1371/journal.ppat.1002203. Epub 2011 Sep 15.

PMID: 21949649
7

A novel synthetic quantification standard including virus and internal report targets: application for the detection and quantification of emerging begomoviruses on tomato.

Péréfarres F, et al.  Virol J. 2011 Aug 5;8:389. doi: 10.1186/1743-422X-8-389.

PMID: 21819593