Genus | Begomovirus |
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NCBI Assembly | GCF_003029065.1 |
Isolate | Cuba: open field near Havana |
Release date | 2018/8/26 |
Submitter | Fuentes,A., Carlos,N., Ruiz,Y., Callard,D., Sanchez,Y., Ochagavia,M.E., Seguin,J., Malpica-Lopez,N., Hohn,T., Lecca,M.R., Perez,R., Doreste,V., Rehrauer,H., Farinelli,L., Pujol,M., Pooggin,M.M. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_009508305.1 |
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Location | 149-499 |
Gene Name | V2 |
Protein Name | pre-coat protein V2 |
Coding Region | ATGTGGGATCCACTTCTAAATGAATTTCCTGAATCTGTTCACGGATTTCGTTGTATGTTAGCTATTAAATATTTGCAGTCCGTTGAGGAAACTTACGAGCCCAATACATTGGGCCACGATTTAATTAGGGATCTTATATCTGTTGTAAGGGCCCGTGACTATGTCGAAGCGACCAGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAACCGTGCTGCTGTCCCCATTGTCCAAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGA |
Protein Sequence | MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDLISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHVPKAQNIQNVSKP |
NCBI Accession | YP_009508306.1 |
---|---|
Location | 309-1085 |
Gene Name | V1 |
Protein Name | coat protein |
Coding Region | ATGTCGAAGCGACCAGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAACCGTGCTGCTGTCCCCATTGTCCAAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGATGTTCCCCGTGGATGTGAAGGCCCATGTAAAGTCCAGTCTTATGAGCAGCGGGATGATATTAAGCACACTGGTGTTGTTCGTTGTGTTAGTGATGTTACTCGTGGATCTGGAATTACTCACAGAGTCGGTAAGAGGTTCTGTGTTAAATCGATATATTTTTTAGGTAAAGTCTGGATGGATGAAAATATCAAGAAGCAGAATCACACTAATCAGGTCATGTTCTTTTTGGTCCGTGATAGAAGGCCCTATGGAAGCAGTCCAATGGATTTTGGACAGGTTTTTAATATGTTCGATAATGAGCCCAGTACCGCAACTGTGAAGAATGATTTGCGTGATAGGTTTCAAGTGATGAGGAAATTTCATGCTACAGTTATTGGTGGGCCCTCTGGAATGAAAGAACAGGCATTAGTTAAGAGATTTTTTAAAATTAACAGTCATGTAACGTATAATCATCAGGAGGCAGCCAAGTACGAGAACCATACTGAAAACGCCTTGTTATTGTATATGGCATGTACGCATGCCTCTAATCCAGTGTATGCAACTATGAAAATACGCATCTATTTCTATGATTCCATCATGAATTAA |
Protein Sequence | MSKRPGDIIISTPVSKVRRRLNFDSPYSNRAAVPIVQGTNKRRSWTYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGVVRCVSDVTRGSGITHRVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATMKIRIYFYDSIMN |
NCBI Accession | YP_009508307.1 |
---|---|
Location | 1082-1480 |
Gene Name | C3 |
Protein Name | replication enhancer |
Coding Region | ATGGATTCACGCACAGGGGAACTCATCACTGCACATCAGGCGGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAGGATATACAGAGTAGAGGACCCGTTGTACACCAAGACAAGGGTGTACCACGTACAGATACGGTTCAATCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCCTACCTGAACTTCCAAGTCTGGACGACATCGACGACAGCTTCTGGGTCAACTTATTTAGCTAGGTTTAGGCACTTAGTCAACCTGTACCTAGATCAGTTAGGCGTGATTTCCATTAACAATGTAATTAGAGCTGTTCGTTTCGCAACAGACAGAGCGTATGTAAATTATGTACTGGAAGATCACTCAATAAAATTCAAATTTTATTAA |
Protein Sequence | MDSRTGELITAHQAENGVYIWEIENPLYFRIYRVEDPLYTKTRVYHVQIRFNHNLRRALHLHKAYLNFQVWTTSTTASGSTYLARFRHLVNLYLDQLGVISINNVIRAVRFATDRAYVNYVLEDHSIKFKFY |
NCBI Accession | YP_009508308.1 |
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Location | 1227-1616 |
Gene Name | C2 |
Protein Name | transcriptional transactivator |
Coding Region | ATGCGATCTTCATCACCCTCACAGCCCCCCTCTATCAAGAAGACACACAGGCAGGCCAAGAGGAGGGCCATCAGGAGGAGACGGATTGATCTGGAGTGCGGGTGCTCCATCTACTTCCACATAGGCTGTACGGGACATGGATTCACGCACAGGGGAACTCATCACTGCACATCAGGCGGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAGGATATACAGAGTAGAGGACCCGTTGTACACCAAGACAAGGGTGTACCACGTACAGATACGGTTCAATCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCCTACCTGAACTTCCAAGTCTGGACGACATCGACGACAGCTTCTGGGTCAACTTATTTAGCTAG |
Protein Sequence | MRSSSPSQPPSIKKTHRQAKRRAIRRRRIDLECGCSIYFHIGCTGHGFTHRGTHHCTSGGEWRVYLGDRKSPLFQDIQSRGPVVHQDKGVPRTDTVQSQPEESVASPQSLPELPSLDDIDDSFWVNLFS |
NCBI Accession | YP_009508309.1 |
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Location | 1528-2613 |
Gene Name | C1 |
Protein Name | replication initiator protein |
Coding Region | ATGCCACGAAAGGGTTCTTTCTCAGTTAAAGCCAAAAACTATTTCCTCACTTATCCGCAGTGTTCCTTAACCAAAGAGGAGACACTTTCCCAATTACAAAACCTAAAAACTCCGGTGAACAAGAAGTTCATCAAAATCTGCAAAGAGCTCCACGAAAATGGGGAGCCTCATCTCCATGTGCTCATCCAGTTCGAGGGAAAGTACAACTGCACGAATAACAGATTCTTCGATCTGGTGTCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATGTCGAGAAGGACGGGGACACAATCGAATGGGGAGTGTTCCAGGTCGACGGAAGAAGTGCTCGGGGCGGTCAGCAAACAGCTAATGACGCAGCCGCCGAGGCATTAAACTCTGGAACAAAGGAGGCGGCCCTGAAAATCATCAGGGAGAAGCTACCGGAGAAGTATCTCTTTCAGTTCCACAACCTATCCAGTAACCTAGATAGGATTTTCAGTGAGGCTCCGGAGCCATGGTCTCCTCCGTTTCCCCTCTCCTCTTTCACTAACGTTCCTGACGAGATGCAAGAGTGGGCGGACGGTTATTTTGGGAGGGGTTCCGCTGCGCGGCCAGAAAGACCATTAAGTCTAATAGTCGAAGGTGACTCGAGGACAGGGAAGACGATGTGGGCTCGTGCGTTAGGCCCACATAACTATCTCAGTGGACATCTGGACTTCAATACTCGAGTCTATTCGAACGAAGTGGAGTATAACGTCATTGATGACGTCGCACCGCACTATCTAAAGCTAAAGCACTGGAAAGAACTTCTGGGGGCCCAGAAGGACTGGCAGTCAAATTGCAAATACGGCAAGCCAGTTCAAATTAAAGGAGGTATCCCTTCAATCGTGCTTTGCAATCCGGGTGAGGGTGCCAGCTATAAAGAGTTCCTAGACAAAGAGGAAAACATAGGTCTCAGGAACTGGACCATCAAGAATGCGATCTTCATCACCCTCACAGCCCCCCTCTATCAAGAAGACACACAGGCAGGCCAAGAGGAGGGCCATCAGGAGGAGACGGATTGA |
Protein Sequence | MPRKGSFSVKAKNYFLTYPQCSLTKEETLSQLQNLKTPVNKKFIKICKELHENGEPHLHVLIQFEGKYNCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYVEKDGDTIEWGVFQVDGRSARGGQQTANDAAAEALNSGTKEAALKIIREKLPEKYLFQFHNLSSNLDRIFSEAPEPWSPPFPLSSFTNVPDEMQEWADGYFGRGSAARPERPLSLIVEGDSRTGKTMWARALGPHNYLSGHLDFNTRVYSNEVEYNVIDDVAPHYLKLKHWKELLGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKEFLDKEENIGLRNWTIKNAIFITLTAPLYQEDTQAGQEEGHQEETD |
NCBI Accession | YP_009508310.1 |
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Location | 2199-2456 |
Gene Name | C4 |
Protein Name | C4 |
Coding Region | ATGGGGAGCCTCATCTCCATGTGCTCATCCAGTTCGAGGGAAAGTACAACTGCACGAATAACAGATTCTTCGATCTGGTGTCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATGTCGAGAAGGACGGGGACACAATCGAATGGGGAGTGTTCCAGGTCGACGGAAGAAGTGCTCGGGGCGGTCAGCAAACAGCTAATGACGCAGCCGCCGAGGCATTAA |
Protein Sequence | MGSLISMCSSSSRESTTARITDSSIWCPQPGQHISIRTYRELNPAPTSSPMSRRTGTQSNGECSRSTEEVLGAVSKQLMTQPPRH |
1 |
Spinach latent virus Infecting Tomato in Virginia, United States. Vargas-Asencio J, et al. Plant Dis. 2013 Dec;97(12):1663. doi: 10.1094/PDIS-05-13-0529-PDN. PMID: 30716862 |
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2 |
Favara GM, et al. Phytopathology. 2019 Mar;109(3):480-487. doi: 10.1094/PHYTO-06-18-0203-R. Epub 2019 Jan 8. PMID: 30204547 |
3 |
To Be Seen or Not to Be Seen: Latent Infection by Tobamoviruses. Ilyas R, et al. Plants (Basel). 2022 Aug 21;11(16):2166. doi: 10.3390/plants11162166. PMID: 36015469 |
4 |
First Report of Spinach latent virus in Tomato in New Zealand. Lebas BSM, et al. Plant Dis. 2007 Feb;91(2):228. doi: 10.1094/PDIS-91-2-0228A. PMID: 30781015 |
5 |
RNA Silencing-Mediated Apple Latent Spherical Virus Vaccine in Plants. Li C, et al. Methods Mol Biol. 2019;2028:273-288. doi: 10.1007/978-1-4939-9635-3_16. PMID: 31228121 |
6 |
First report of apple latent spherical virus infecting Angelica sinensis. Jin W, et al. Plant Dis. 2022 Sep 15. doi: 10.1094/PDIS-08-22-1756-PDN. Online ahead of print. PMID: 36109878 |
7 |
First Report of Columnea latent viroid (CLVd) in Tomato in Mali. Batuman O, et al. Plant Dis. 2013 May;97(5):692. doi: 10.1094/PDIS-10-12-0920-PDN. PMID: 30722209 |
8 |
Distribution of Tomato spotted wilt virus in dahlia plants. Asano S, et al. Lett Appl Microbiol. 2017 Apr;64(4):297-303. doi: 10.1111/lam.12720. PMID: 28129432 |
9 |
Molecular characterisation of the full-length genome of olive latent virus 1 isolated from tomato. Hasiów-Jaroszewska B, et al. J Appl Genet. 2011 May;52(2):245-7. doi: 10.1007/s13353-010-0020-2. Epub 2010 Dec 23. PMID: 21181333 |
10 |
Li C, et al. Virus Genes. 2020 Feb;56(1):67-77. doi: 10.1007/s11262-019-01708-5. Epub 2019 Oct 23. PMID: 31646461 |