Tomato latent virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_003029065.1 |
| Isolate | Cuba: open field near Havana |
| Release date | 2018/8/26 |
| Submitter | Fuentes,A., Carlos,N., Ruiz,Y., Callard,D., Sanchez,Y., Ochagavia,M.E., Seguin,J., Malpica-Lopez,N., Hohn,T., Lecca,M.R., Perez,R., Doreste,V., Rehrauer,H., Farinelli,L., Pujol,M., Pooggin,M.M. |
| Host | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_038963
ACCGGATGGCCGCGCCTTTTCCTTTTATGTGGTCTTCACGAGGGTTACACAGACGTCACTGTCAATCAATCAAATTGCATCCTCAAACGTTAGATAAGTGTTCATTTGTCTTTATATACTTGGTCCCCAAGTATTTTGTCTTGCAAATATGTGGGATCCACTTCTAAATGAATTTCCTGAATCTGTTCACGGATTTCGTTGTATGTTAGCTATTAAATATTTGCAGTCCGTTGAGGAAACTTACGAGCCCAATACATTGGGCCACGATTTAATTAGGGATCTTATATCTGTTGTAAGGGCCCGTGACTATGTCGAAGCGACCAGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAACCGTGCTGCTGTCCCCATTGTCCAAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGATGTTCCCCGTGGATGTGAAGGCCCATGTAAAGTCCAGTCTTATGAGCAGCGGGATGATATTAAGCACACTGGTGTTGTTCGTTGTGTTAGTGATGTTACTCGTGGATCTGGAATTACTCACAGAGTCGGTAAGAGGTTCTGTGTTAAATCGATATATTTTTTAGGTAAAGTCTGGATGGATGAAAATATCAAGAAGCAGAATCACACTAATCAGGTCATGTTCTTTTTGGTCCGTGATAGAAGGCCCTATGGAAGCAGTCCAATGGATTTTGGACAGGTTTTTAATATGTTCGATAATGAGCCCAGTACCGCAACTGTGAAGAATGATTTGCGTGATAGGTTTCAAGTGATGAGGAAATTTCATGCTACAGTTATTGGTGGGCCCTCTGGAATGAAAGAACAGGCATTAGTTAAGAGATTTTTTAAAATTAACAGTCATGTAACGTATAATCATCAGGAGGCAGCCAAGTACGAGAACCATACTGAAAACGCCTTGTTATTGTATATGGCATGTACGCATGCCTCTAATCCAGTGTATGCAACTATGAAAATACGCATCTATTTCTATGATTCCATCATGAATTAATAAAATTTGAATTTTATTGAGTGATCTTCCAGTACATAATTTACATACGCTCTGTCTGTTGCGAAACGAACAGCTCTAATTACATTGTTAATGGAAATCACGCCTAACTGATCTAGGTACAGGTTGACTAAGTGCCTAAACCTAGCTAAATAAGTTGACCCAGAAGCTGTCGTCGATGTCGTCCAGACTTGGAAGTTCAGGTAGGCTTTGTGGAGATGCAACGCTCTCCTCAGGTTGTGATTGAACCGTATCTGTACGTGGTACACCCTTGTCTTGGTGTACAACGGGTCCTCTACTCTGTATATCCTGAAATAGAGGGGATTTTCTATCTCCCAGATATACACGCCATTCTCCGCCTGATGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGTCCCGTACAGCCTATGTGGAAGTAGATGGAGCACCCGCACTCCAGATCAATCCGTCTCCTCCTGATGGCCCTCCTCTTGGCCTGCCTGTGTGTCTTCTTGATAGAGGGGGGCTGTGAGGGTGATGAAGATCGCATTCTTGATGGTCCAGTTCCTGAGACCTATGTTTTCCTCTTTGTCTAGGAACTCTTTATAGCTGGCACCCTCACCCGGATTGCAAAGCACGATTGAAGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGACTCGAGTATTGAAGTCCAGATGTCCACTGAGATAGTTATGTGGGCCTAACGCACGAGCCCACATCGTCTTCCCTGTCCTCGAGTCACCTTCGACTATTAGACTTAATGGTCTTTCTGGCCGCGCAGCGGAACCCCTCCCAAAATAACCGTCCGCCCACTCTTGCATCTCGTCAGGAACGTTAGTGAAAGAGGAGAGGGGAAACGGAGGAGACCATGGCTCCGGAGCCTCACTGAAAATCCTATCTAGGTTACTGGATAGGTTGTGGAACTGAAAGAGATACTTCTCCGGTAGCTTCTCCCTGATGATTTTCAGGGCCGCCTCCTTTGTTCCAGAGTTTAATGCCTCGGCGGCTGCGTCATTAGCTGTTTGCTGACCGCCCCGAGCACTTCTTCCGTCGACCTGGAACACTCCCCATTCGATTGTGTCCCCGTCCTTCTCGACATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGACACCAGATCGAAGAATCTGTTATTCGTGCAGTTGTACTTTCCCTCGAACTGGATGAGCACATGGAGATGAGGCTCCCCATTTTCGTGGAGCTCTTTGCAGATTTTGATGAACTTCTTGTTCACCGGAGTTTTTAGGTTTTGTAATTGGGAAAGTGTCTCCTCTTTGGTTAAGGAACACTGCGGATAAGTGAGGAAATAGTTTTTGGCTTTAACTGAGAAAGAACCCTTTCGTGGCATTTTTGTAAATATGGGATGTTCCCCCCTTAGCTCTCTCGCTCAAAAGTCATATGAATTGGGGGAACTGGGGGAACTTATATAGTAGAAGTTCCTAAAGGCAGATCAACACGTGGCGGCCATCCGTTATAATATT
Gene Information
| NCBI Accession | YP_009508305.1 |
|---|---|
| Location | 149-499 |
| Gene Name | V2 |
| Protein Name | pre-coat protein V2 |
| Coding Region | ATGTGGGATCCACTTCTAAATGAATTTCCTGAATCTGTTCACGGATTTCGTTGTATGTTAGCTATTAAATATTTGCAGTCCGTTGAGGAAACTTACGAGCCCAATACATTGGGCCACGATTTAATTAGGGATCTTATATCTGTTGTAAGGGCCCGTGACTATGTCGAAGCGACCAGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAACCGTGCTGCTGTCCCCATTGTCCAAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGA |
| Protein Sequence | MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDLISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHVPKAQNIQNVSKP |
| NCBI Accession | YP_009508306.1 |
|---|---|
| Location | 309-1085 |
| Gene Name | V1 |
| Protein Name | coat protein |
| Coding Region | ATGTCGAAGCGACCAGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAACCGTGCTGCTGTCCCCATTGTCCAAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGATGTTCCCCGTGGATGTGAAGGCCCATGTAAAGTCCAGTCTTATGAGCAGCGGGATGATATTAAGCACACTGGTGTTGTTCGTTGTGTTAGTGATGTTACTCGTGGATCTGGAATTACTCACAGAGTCGGTAAGAGGTTCTGTGTTAAATCGATATATTTTTTAGGTAAAGTCTGGATGGATGAAAATATCAAGAAGCAGAATCACACTAATCAGGTCATGTTCTTTTTGGTCCGTGATAGAAGGCCCTATGGAAGCAGTCCAATGGATTTTGGACAGGTTTTTAATATGTTCGATAATGAGCCCAGTACCGCAACTGTGAAGAATGATTTGCGTGATAGGTTTCAAGTGATGAGGAAATTTCATGCTACAGTTATTGGTGGGCCCTCTGGAATGAAAGAACAGGCATTAGTTAAGAGATTTTTTAAAATTAACAGTCATGTAACGTATAATCATCAGGAGGCAGCCAAGTACGAGAACCATACTGAAAACGCCTTGTTATTGTATATGGCATGTACGCATGCCTCTAATCCAGTGTATGCAACTATGAAAATACGCATCTATTTCTATGATTCCATCATGAATTAA |
| Protein Sequence | MSKRPGDIIISTPVSKVRRRLNFDSPYSNRAAVPIVQGTNKRRSWTYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGVVRCVSDVTRGSGITHRVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATMKIRIYFYDSIMN |
| NCBI Accession | YP_009508307.1 |
|---|---|
| Location | 1082-1480 |
| Gene Name | C3 |
| Protein Name | replication enhancer |
| Coding Region | ATGGATTCACGCACAGGGGAACTCATCACTGCACATCAGGCGGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAGGATATACAGAGTAGAGGACCCGTTGTACACCAAGACAAGGGTGTACCACGTACAGATACGGTTCAATCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCCTACCTGAACTTCCAAGTCTGGACGACATCGACGACAGCTTCTGGGTCAACTTATTTAGCTAGGTTTAGGCACTTAGTCAACCTGTACCTAGATCAGTTAGGCGTGATTTCCATTAACAATGTAATTAGAGCTGTTCGTTTCGCAACAGACAGAGCGTATGTAAATTATGTACTGGAAGATCACTCAATAAAATTCAAATTTTATTAA |
| Protein Sequence | MDSRTGELITAHQAENGVYIWEIENPLYFRIYRVEDPLYTKTRVYHVQIRFNHNLRRALHLHKAYLNFQVWTTSTTASGSTYLARFRHLVNLYLDQLGVISINNVIRAVRFATDRAYVNYVLEDHSIKFKFY |
| NCBI Accession | YP_009508308.1 |
|---|---|
| Location | 1227-1616 |
| Gene Name | C2 |
| Protein Name | transcriptional transactivator |
| Coding Region | ATGCGATCTTCATCACCCTCACAGCCCCCCTCTATCAAGAAGACACACAGGCAGGCCAAGAGGAGGGCCATCAGGAGGAGACGGATTGATCTGGAGTGCGGGTGCTCCATCTACTTCCACATAGGCTGTACGGGACATGGATTCACGCACAGGGGAACTCATCACTGCACATCAGGCGGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAGGATATACAGAGTAGAGGACCCGTTGTACACCAAGACAAGGGTGTACCACGTACAGATACGGTTCAATCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCCTACCTGAACTTCCAAGTCTGGACGACATCGACGACAGCTTCTGGGTCAACTTATTTAGCTAG |
| Protein Sequence | MRSSSPSQPPSIKKTHRQAKRRAIRRRRIDLECGCSIYFHIGCTGHGFTHRGTHHCTSGGEWRVYLGDRKSPLFQDIQSRGPVVHQDKGVPRTDTVQSQPEESVASPQSLPELPSLDDIDDSFWVNLFS |
| NCBI Accession | YP_009508309.1 |
|---|---|
| Location | 1528-2613 |
| Gene Name | C1 |
| Protein Name | replication initiator protein |
| Coding Region | ATGCCACGAAAGGGTTCTTTCTCAGTTAAAGCCAAAAACTATTTCCTCACTTATCCGCAGTGTTCCTTAACCAAAGAGGAGACACTTTCCCAATTACAAAACCTAAAAACTCCGGTGAACAAGAAGTTCATCAAAATCTGCAAAGAGCTCCACGAAAATGGGGAGCCTCATCTCCATGTGCTCATCCAGTTCGAGGGAAAGTACAACTGCACGAATAACAGATTCTTCGATCTGGTGTCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATGTCGAGAAGGACGGGGACACAATCGAATGGGGAGTGTTCCAGGTCGACGGAAGAAGTGCTCGGGGCGGTCAGCAAACAGCTAATGACGCAGCCGCCGAGGCATTAAACTCTGGAACAAAGGAGGCGGCCCTGAAAATCATCAGGGAGAAGCTACCGGAGAAGTATCTCTTTCAGTTCCACAACCTATCCAGTAACCTAGATAGGATTTTCAGTGAGGCTCCGGAGCCATGGTCTCCTCCGTTTCCCCTCTCCTCTTTCACTAACGTTCCTGACGAGATGCAAGAGTGGGCGGACGGTTATTTTGGGAGGGGTTCCGCTGCGCGGCCAGAAAGACCATTAAGTCTAATAGTCGAAGGTGACTCGAGGACAGGGAAGACGATGTGGGCTCGTGCGTTAGGCCCACATAACTATCTCAGTGGACATCTGGACTTCAATACTCGAGTCTATTCGAACGAAGTGGAGTATAACGTCATTGATGACGTCGCACCGCACTATCTAAAGCTAAAGCACTGGAAAGAACTTCTGGGGGCCCAGAAGGACTGGCAGTCAAATTGCAAATACGGCAAGCCAGTTCAAATTAAAGGAGGTATCCCTTCAATCGTGCTTTGCAATCCGGGTGAGGGTGCCAGCTATAAAGAGTTCCTAGACAAAGAGGAAAACATAGGTCTCAGGAACTGGACCATCAAGAATGCGATCTTCATCACCCTCACAGCCCCCCTCTATCAAGAAGACACACAGGCAGGCCAAGAGGAGGGCCATCAGGAGGAGACGGATTGA |
| Protein Sequence | MPRKGSFSVKAKNYFLTYPQCSLTKEETLSQLQNLKTPVNKKFIKICKELHENGEPHLHVLIQFEGKYNCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYVEKDGDTIEWGVFQVDGRSARGGQQTANDAAAEALNSGTKEAALKIIREKLPEKYLFQFHNLSSNLDRIFSEAPEPWSPPFPLSSFTNVPDEMQEWADGYFGRGSAARPERPLSLIVEGDSRTGKTMWARALGPHNYLSGHLDFNTRVYSNEVEYNVIDDVAPHYLKLKHWKELLGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKEFLDKEENIGLRNWTIKNAIFITLTAPLYQEDTQAGQEEGHQEETD |
| NCBI Accession | YP_009508310.1 |
|---|---|
| Location | 2199-2456 |
| Gene Name | C4 |
| Protein Name | C4 |
| Coding Region | ATGGGGAGCCTCATCTCCATGTGCTCATCCAGTTCGAGGGAAAGTACAACTGCACGAATAACAGATTCTTCGATCTGGTGTCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATGTCGAGAAGGACGGGGACACAATCGAATGGGGAGTGTTCCAGGTCGACGGAAGAAGTGCTCGGGGCGGTCAGCAAACAGCTAATGACGCAGCCGCCGAGGCATTAA |
| Protein Sequence | MGSLISMCSSSSRESTTARITDSSIWCPQPGQHISIRTYRELNPAPTSSPMSRRTGTQSNGECSRSTEEVLGAVSKQLMTQPPRH |