Tomato latent virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_003029065.1
Isolate Cuba: open field near Havana
Release date 2018/8/26
Submitter Fuentes,A., Carlos,N., Ruiz,Y., Callard,D., Sanchez,Y., Ochagavia,M.E., Seguin,J., Malpica-Lopez,N., Hohn,T., Lecca,M.R., Perez,R., Doreste,V., Rehrauer,H., Farinelli,L., Pujol,M., Pooggin,M.M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_038963
ACCGGATGGCCGCGCCTTTTCCTTTTATGTGGTCTTCACGAGGGTTACACAGACGTCACTGTCAATCAATCAAATTGCATCCTCAAACGTTAGATAAGTGTTCATTTGTCTTTATATACTTGGTCCCCAAGTATTTTGTCTTGCAAATATGTGGGATCCACTTCTAAATGAATTTCCTGAATCTGTTCACGGATTTCGTTGTATGTTAGCTATTAAATATTTGCAGTCCGTTGAGGAAACTTACGAGCCCAATACATTGGGCCACGATTTAATTAGGGATCTTATATCTGTTGTAAGGGCCCGTGACTATGTCGAAGCGACCAGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAACCGTGCTGCTGTCCCCATTGTCCAAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGATGTTCCCCGTGGATGTGAAGGCCCATGTAAAGTCCAGTCTTATGAGCAGCGGGATGATATTAAGCACACTGGTGTTGTTCGTTGTGTTAGTGATGTTACTCGTGGATCTGGAATTACTCACAGAGTCGGTAAGAGGTTCTGTGTTAAATCGATATATTTTTTAGGTAAAGTCTGGATGGATGAAAATATCAAGAAGCAGAATCACACTAATCAGGTCATGTTCTTTTTGGTCCGTGATAGAAGGCCCTATGGAAGCAGTCCAATGGATTTTGGACAGGTTTTTAATATGTTCGATAATGAGCCCAGTACCGCAACTGTGAAGAATGATTTGCGTGATAGGTTTCAAGTGATGAGGAAATTTCATGCTACAGTTATTGGTGGGCCCTCTGGAATGAAAGAACAGGCATTAGTTAAGAGATTTTTTAAAATTAACAGTCATGTAACGTATAATCATCAGGAGGCAGCCAAGTACGAGAACCATACTGAAAACGCCTTGTTATTGTATATGGCATGTACGCATGCCTCTAATCCAGTGTATGCAACTATGAAAATACGCATCTATTTCTATGATTCCATCATGAATTAATAAAATTTGAATTTTATTGAGTGATCTTCCAGTACATAATTTACATACGCTCTGTCTGTTGCGAAACGAACAGCTCTAATTACATTGTTAATGGAAATCACGCCTAACTGATCTAGGTACAGGTTGACTAAGTGCCTAAACCTAGCTAAATAAGTTGACCCAGAAGCTGTCGTCGATGTCGTCCAGACTTGGAAGTTCAGGTAGGCTTTGTGGAGATGCAACGCTCTCCTCAGGTTGTGATTGAACCGTATCTGTACGTGGTACACCCTTGTCTTGGTGTACAACGGGTCCTCTACTCTGTATATCCTGAAATAGAGGGGATTTTCTATCTCCCAGATATACACGCCATTCTCCGCCTGATGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGTCCCGTACAGCCTATGTGGAAGTAGATGGAGCACCCGCACTCCAGATCAATCCGTCTCCTCCTGATGGCCCTCCTCTTGGCCTGCCTGTGTGTCTTCTTGATAGAGGGGGGCTGTGAGGGTGATGAAGATCGCATTCTTGATGGTCCAGTTCCTGAGACCTATGTTTTCCTCTTTGTCTAGGAACTCTTTATAGCTGGCACCCTCACCCGGATTGCAAAGCACGATTGAAGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGACTCGAGTATTGAAGTCCAGATGTCCACTGAGATAGTTATGTGGGCCTAACGCACGAGCCCACATCGTCTTCCCTGTCCTCGAGTCACCTTCGACTATTAGACTTAATGGTCTTTCTGGCCGCGCAGCGGAACCCCTCCCAAAATAACCGTCCGCCCACTCTTGCATCTCGTCAGGAACGTTAGTGAAAGAGGAGAGGGGAAACGGAGGAGACCATGGCTCCGGAGCCTCACTGAAAATCCTATCTAGGTTACTGGATAGGTTGTGGAACTGAAAGAGATACTTCTCCGGTAGCTTCTCCCTGATGATTTTCAGGGCCGCCTCCTTTGTTCCAGAGTTTAATGCCTCGGCGGCTGCGTCATTAGCTGTTTGCTGACCGCCCCGAGCACTTCTTCCGTCGACCTGGAACACTCCCCATTCGATTGTGTCCCCGTCCTTCTCGACATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGACACCAGATCGAAGAATCTGTTATTCGTGCAGTTGTACTTTCCCTCGAACTGGATGAGCACATGGAGATGAGGCTCCCCATTTTCGTGGAGCTCTTTGCAGATTTTGATGAACTTCTTGTTCACCGGAGTTTTTAGGTTTTGTAATTGGGAAAGTGTCTCCTCTTTGGTTAAGGAACACTGCGGATAAGTGAGGAAATAGTTTTTGGCTTTAACTGAGAAAGAACCCTTTCGTGGCATTTTTGTAAATATGGGATGTTCCCCCCTTAGCTCTCTCGCTCAAAAGTCATATGAATTGGGGGAACTGGGGGAACTTATATAGTAGAAGTTCCTAAAGGCAGATCAACACGTGGCGGCCATCCGTTATAATATT

Gene Information

NCBI Accession YP_009508305.1
Location 149-499
Gene Name V2
Protein Name pre-coat protein V2
Coding Region ATGTGGGATCCACTTCTAAATGAATTTCCTGAATCTGTTCACGGATTTCGTTGTATGTTAGCTATTAAATATTTGCAGTCCGTTGAGGAAACTTACGAGCCCAATACATTGGGCCACGATTTAATTAGGGATCTTATATCTGTTGTAAGGGCCCGTGACTATGTCGAAGCGACCAGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAACCGTGCTGCTGTCCCCATTGTCCAAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGA
Protein Sequence MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDLISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHVPKAQNIQNVSKP

NCBI Accession YP_009508306.1
Location 309-1085
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAACCGTGCTGCTGTCCCCATTGTCCAAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGATGTTCCCCGTGGATGTGAAGGCCCATGTAAAGTCCAGTCTTATGAGCAGCGGGATGATATTAAGCACACTGGTGTTGTTCGTTGTGTTAGTGATGTTACTCGTGGATCTGGAATTACTCACAGAGTCGGTAAGAGGTTCTGTGTTAAATCGATATATTTTTTAGGTAAAGTCTGGATGGATGAAAATATCAAGAAGCAGAATCACACTAATCAGGTCATGTTCTTTTTGGTCCGTGATAGAAGGCCCTATGGAAGCAGTCCAATGGATTTTGGACAGGTTTTTAATATGTTCGATAATGAGCCCAGTACCGCAACTGTGAAGAATGATTTGCGTGATAGGTTTCAAGTGATGAGGAAATTTCATGCTACAGTTATTGGTGGGCCCTCTGGAATGAAAGAACAGGCATTAGTTAAGAGATTTTTTAAAATTAACAGTCATGTAACGTATAATCATCAGGAGGCAGCCAAGTACGAGAACCATACTGAAAACGCCTTGTTATTGTATATGGCATGTACGCATGCCTCTAATCCAGTGTATGCAACTATGAAAATACGCATCTATTTCTATGATTCCATCATGAATTAA
Protein Sequence MSKRPGDIIISTPVSKVRRRLNFDSPYSNRAAVPIVQGTNKRRSWTYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGVVRCVSDVTRGSGITHRVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATMKIRIYFYDSIMN

NCBI Accession YP_009508307.1
Location 1082-1480
Gene Name C3
Protein Name replication enhancer
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCACATCAGGCGGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAGGATATACAGAGTAGAGGACCCGTTGTACACCAAGACAAGGGTGTACCACGTACAGATACGGTTCAATCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCCTACCTGAACTTCCAAGTCTGGACGACATCGACGACAGCTTCTGGGTCAACTTATTTAGCTAGGTTTAGGCACTTAGTCAACCTGTACCTAGATCAGTTAGGCGTGATTTCCATTAACAATGTAATTAGAGCTGTTCGTTTCGCAACAGACAGAGCGTATGTAAATTATGTACTGGAAGATCACTCAATAAAATTCAAATTTTATTAA
Protein Sequence MDSRTGELITAHQAENGVYIWEIENPLYFRIYRVEDPLYTKTRVYHVQIRFNHNLRRALHLHKAYLNFQVWTTSTTASGSTYLARFRHLVNLYLDQLGVISINNVIRAVRFATDRAYVNYVLEDHSIKFKFY

NCBI Accession YP_009508308.1
Location 1227-1616
Gene Name C2
Protein Name transcriptional transactivator
Coding Region ATGCGATCTTCATCACCCTCACAGCCCCCCTCTATCAAGAAGACACACAGGCAGGCCAAGAGGAGGGCCATCAGGAGGAGACGGATTGATCTGGAGTGCGGGTGCTCCATCTACTTCCACATAGGCTGTACGGGACATGGATTCACGCACAGGGGAACTCATCACTGCACATCAGGCGGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAGGATATACAGAGTAGAGGACCCGTTGTACACCAAGACAAGGGTGTACCACGTACAGATACGGTTCAATCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCCTACCTGAACTTCCAAGTCTGGACGACATCGACGACAGCTTCTGGGTCAACTTATTTAGCTAG
Protein Sequence MRSSSPSQPPSIKKTHRQAKRRAIRRRRIDLECGCSIYFHIGCTGHGFTHRGTHHCTSGGEWRVYLGDRKSPLFQDIQSRGPVVHQDKGVPRTDTVQSQPEESVASPQSLPELPSLDDIDDSFWVNLFS

NCBI Accession YP_009508309.1
Location 1528-2613
Gene Name C1
Protein Name replication initiator protein
Coding Region ATGCCACGAAAGGGTTCTTTCTCAGTTAAAGCCAAAAACTATTTCCTCACTTATCCGCAGTGTTCCTTAACCAAAGAGGAGACACTTTCCCAATTACAAAACCTAAAAACTCCGGTGAACAAGAAGTTCATCAAAATCTGCAAAGAGCTCCACGAAAATGGGGAGCCTCATCTCCATGTGCTCATCCAGTTCGAGGGAAAGTACAACTGCACGAATAACAGATTCTTCGATCTGGTGTCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATGTCGAGAAGGACGGGGACACAATCGAATGGGGAGTGTTCCAGGTCGACGGAAGAAGTGCTCGGGGCGGTCAGCAAACAGCTAATGACGCAGCCGCCGAGGCATTAAACTCTGGAACAAAGGAGGCGGCCCTGAAAATCATCAGGGAGAAGCTACCGGAGAAGTATCTCTTTCAGTTCCACAACCTATCCAGTAACCTAGATAGGATTTTCAGTGAGGCTCCGGAGCCATGGTCTCCTCCGTTTCCCCTCTCCTCTTTCACTAACGTTCCTGACGAGATGCAAGAGTGGGCGGACGGTTATTTTGGGAGGGGTTCCGCTGCGCGGCCAGAAAGACCATTAAGTCTAATAGTCGAAGGTGACTCGAGGACAGGGAAGACGATGTGGGCTCGTGCGTTAGGCCCACATAACTATCTCAGTGGACATCTGGACTTCAATACTCGAGTCTATTCGAACGAAGTGGAGTATAACGTCATTGATGACGTCGCACCGCACTATCTAAAGCTAAAGCACTGGAAAGAACTTCTGGGGGCCCAGAAGGACTGGCAGTCAAATTGCAAATACGGCAAGCCAGTTCAAATTAAAGGAGGTATCCCTTCAATCGTGCTTTGCAATCCGGGTGAGGGTGCCAGCTATAAAGAGTTCCTAGACAAAGAGGAAAACATAGGTCTCAGGAACTGGACCATCAAGAATGCGATCTTCATCACCCTCACAGCCCCCCTCTATCAAGAAGACACACAGGCAGGCCAAGAGGAGGGCCATCAGGAGGAGACGGATTGA
Protein Sequence MPRKGSFSVKAKNYFLTYPQCSLTKEETLSQLQNLKTPVNKKFIKICKELHENGEPHLHVLIQFEGKYNCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYVEKDGDTIEWGVFQVDGRSARGGQQTANDAAAEALNSGTKEAALKIIREKLPEKYLFQFHNLSSNLDRIFSEAPEPWSPPFPLSSFTNVPDEMQEWADGYFGRGSAARPERPLSLIVEGDSRTGKTMWARALGPHNYLSGHLDFNTRVYSNEVEYNVIDDVAPHYLKLKHWKELLGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKEFLDKEENIGLRNWTIKNAIFITLTAPLYQEDTQAGQEEGHQEETD

NCBI Accession YP_009508310.1
Location 2199-2456
Gene Name C4
Protein Name C4
Coding Region ATGGGGAGCCTCATCTCCATGTGCTCATCCAGTTCGAGGGAAAGTACAACTGCACGAATAACAGATTCTTCGATCTGGTGTCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATGTCGAGAAGGACGGGGACACAATCGAATGGGGAGTGTTCCAGGTCGACGGAAGAAGTGCTCGGGGCGGTCAGCAAACAGCTAATGACGCAGCCGCCGAGGCATTAA
Protein Sequence MGSLISMCSSSSRESTTARITDSSIWCPQPGQHISIRTYRELNPAPTSSPMSRRTGTQSNGECSRSTEEVLGAVSKQLMTQPPRH

References More References in PubMed

1

Spinach latent virus Infecting Tomato in Virginia, United States.

Vargas-Asencio J, et al.  Plant Dis. 2013 Dec;97(12):1663. doi: 10.1094/PDIS-05-13-0529-PDN.

PMID: 30716862

2

Kinetics of Systemic Invasion and Latent and Incubation Periods of Tomato severe rugose virus and Tomato chlorosis virus in Single and Co-Infections in Tomato Plants.

Favara GM, et al.  Phytopathology. 2019 Mar;109(3):480-487. doi: 10.1094/PHYTO-06-18-0203-R. Epub 2019 Jan 8.

PMID: 30204547

3

To Be Seen or Not to Be Seen: Latent Infection by Tobamoviruses.

Ilyas R, et al.  Plants (Basel). 2022 Aug 21;11(16):2166. doi: 10.3390/plants11162166.

PMID: 36015469

4

First Report of Spinach latent virus in Tomato in New Zealand.

Lebas BSM, et al.  Plant Dis. 2007 Feb;91(2):228. doi: 10.1094/PDIS-91-2-0228A.

PMID: 30781015

5

RNA Silencing-Mediated Apple Latent Spherical Virus Vaccine in Plants.

Li C, et al.  Methods Mol Biol. 2019;2028:273-288. doi: 10.1007/978-1-4939-9635-3_16.

PMID: 31228121

6

First report of apple latent spherical virus infecting Angelica sinensis.

Jin W, et al.  Plant Dis. 2022 Sep 15. doi: 10.1094/PDIS-08-22-1756-PDN. Online ahead of print.

PMID: 36109878

7

First Report of Columnea latent viroid (CLVd) in Tomato in Mali.

Batuman O, et al.  Plant Dis. 2013 May;97(5):692. doi: 10.1094/PDIS-10-12-0920-PDN.

PMID: 30722209

8

Distribution of Tomato spotted wilt virus in dahlia plants.

Asano S, et al.  Lett Appl Microbiol. 2017 Apr;64(4):297-303. doi: 10.1111/lam.12720.

PMID: 28129432

9

Molecular characterisation of the full-length genome of olive latent virus 1 isolated from tomato.

Hasiów-Jaroszewska B, et al.  J Appl Genet. 2011 May;52(2):245-7. doi: 10.1007/s13353-010-0020-2. Epub 2010 Dec 23.

PMID: 21181333

10

Estimation of the functions of viral RNA silencing suppressors by apple latent spherical virus vector.

Li C, et al.  Virus Genes. 2020 Feb;56(1):67-77. doi: 10.1007/s11262-019-01708-5. Epub 2019 Oct 23.

PMID: 31646461