Tomato interveinal chlorosis virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_002823985.1
Isolate Brazil: Pernambuco
Release date 2018/8/25
Submitter Albuquerque,L.C., Varsani,A., Fernandes,F.R., Pinheiro,B., Martin,D.P., de Tarso Oliveira Ferreira,P., Lemos,T.O., Inoue-Nagata,A.K., Martins,D.P., Ferreira,P.T.O.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_038469
ACCGGATGGCCGCGAAAAATTTTGGACTTGGGCCGCTTTAGTTGGGCCCGCTCTCTTTATTGAATGAAAGTAATGTGTGGCCCAACCATATTACGTCTGACGAGTTAAGATATTTGTAACGACTTAGCGCCCAAGTTTAGCAACGGCTATATATTGAACGTGCAATTGTCAGTAACTTTAATTCAAAATGCCTAAGCGCGATGCCCCATGGCGCCACATGGCAGGTACGTCTAAGATTAGCCGGGTCGCTAATTATTCTCCTCGTGCAGGAGTTGGGCCACGATCCAACAAGGCCTCTGAATGGGTTAACAGGCCTATGTACAGGAAGCCCAGGATATATCGGATGTACAGGACCCCCGATGTTCCAAGAGGCTGTGAAGGCCCATGTAAAGTCCAGTCGTATGAGCAGCGTCACGATATATCCCATGTTGGTAAGGTGATGTGCGTCTCCGACGTGACAAGAGGTAATGGTATTACCCACCGTGTAGGGAAGCGTTTTTGTGTTAAGTCCGTTTATATTTTAGGTAAGGTATGGATGGACGAGAATATCAAGTTGAAGAACCACACCAACAGTGTTATGTTCTGGCTGGTCAGAGACCGTAGACCCTATGGGACTCCTATGGACTTCGGCCAAGTTTTTAACATGTTTGACAATGAGCCCAGTACTGCCACGGTCAAGAACGATCTTCGTGATCGTTACCAAGTTATGCATAAATTCTATGCTAAGGTGACAGGTGGACAATACGCAAGCAATGAACAAGCGCTGGTCAAGCGTTTCTGGAGGGTCAACAATCACGTGGTGTACAATCATCAAGAAGCCGGGAAATACGAGAATCATACGGAGAACGCACTATTATTGTATATGGCATGTACTCATGCCTCGAACCCTGTGTATGCGACTTTAAAAATTCGGATCTATTTCTATGATTCGATAATAAATTAATAAATGTTGAATTTTATTGAATGATTCTCTAGTACATCATGAACATATGATTTGTCTGTTGCGAAACGAACAGCTCTAATTACATTATTAACTGAAATAACGCCTAATTGATCTAGATACAACTGAACAAGAAATTTAAATCTACTTAAATATCTCATCCCAGAAGCTCTCAGGGATGTCGTCCAAACTTGGAAGTTGAGATAAGCCTTGTGGAGACCCAACACTCTCCGCAGGTTGTGGTTGAACCGTATCTGGACGTGGTAGACTCTCGTCCTCGTGTAGAGTAGGTCCTCCACATTGTACATCTTGAAATATAGGGGATTTGATATCTCCCAGGTATACACGCCATTCTCTGCCTGATGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGCCCTGCGCAGTGGATGTGAACGTATATGGAGCACCCGCACTGTAGATCAATTCGTCTTCGTCGTGTTGCCCTCTTTCTTTTAGCTGCCCGATGTTGAACTTTGATAGAGGGGGGAGTTGAGAAAGACGAATTGCGCATTGTGCTTTGTCCAATTATTTAATGCTGAGTTTTCCTCTTTGTCGAGGAAAGATTTATAACTGGCCCCCTCGCCAGGATTGCAAAGCACGATGCATGGGATACCTCCTTTAATTTGAACTGGCTTTCCGTATTTGCAGTTTGATTGCCAGTCCCTTTGGGCCCCGATAAGTTCTTTCCAGTGCTTTAACTTTAGATAGTGCGGTGCGACATCATCAATGACGTTATACTGCACATCGTTTGAATACACCTTTGAATTGAAATCGAGGTGACCGCTCAAGTAATTGTGGGACCCTAATGCACGTGCCCACATGGTCTTCCCTGTCCTTGAATCACCCTCGATTATTATACTGATAGGCCTCTCCGGCCGCGCAGCGGCATCCCTTCCGAAATAGTCATGTGCCCAAGATTGCATCTCGACAGGCACGTTAGTGAACGACGAGAGGGGAAACGGAGGAACCCACGGTTCTGGAGCCTTTGCAAATATACGCTCTAAATTCGAACGAATATTATGATGCTGAAGAACATAATCTTTTGGCTGTTCCTCCTTTAATATATTGAGGGCCTCCATGACTGATCCTGCGTTAAGAACCTTGGCATACGTGTCGTTGGCAGATTGCTGACCTCCTCTAGCTGATCTTCCATCGATCTGGAAAACTCCATGATCAACGAAGTCTCCGTCTTTCTCCACGTATGCCTTGACATCTGACGAGCTCTTAGCTGCCTGAATGTTCGGATGGAAATGTGCTGACCTTGTTGGGGATACAAGGTCGAACAATCGTTCGTTCGTGCACTGGTATTTTCCTTCGAACTGTATGAGGACGTGCAGATGAGGTTGCCCATCTTCGTGTAATTCTCTCGCAACACGAACGAATAGTTTATTGACTGGTATTGTTAAGGCTAAGAGTTGGGAAAGTGCTTCTTCTTTCGAAAGAGAACACTTAGGATAAGTGAGGAAATAGTTTTTGGCATTTAAACGAAATCGTTTCGGGAGTGGCATATTTGTAAATAAGAGCTTGTACACCGATTGGGAGCTCTCACAAAGTCCGAATGAATCGGTGTATTGGTGTACAATATATACTAGAACCCTCAATAGAACTTTCAATCTCGATCGAACACGTGGCGGCCATCCGTTATAATATT

Gene Information

NCBI Accession YP_009506521.1
Location 188-943
Protein Name V1
Coding Region ATGCCTAAGCGCGATGCCCCATGGCGCCACATGGCAGGTACGTCTAAGATTAGCCGGGTCGCTAATTATTCTCCTCGTGCAGGAGTTGGGCCACGATCCAACAAGGCCTCTGAATGGGTTAACAGGCCTATGTACAGGAAGCCCAGGATATATCGGATGTACAGGACCCCCGATGTTCCAAGAGGCTGTGAAGGCCCATGTAAAGTCCAGTCGTATGAGCAGCGTCACGATATATCCCATGTTGGTAAGGTGATGTGCGTCTCCGACGTGACAAGAGGTAATGGTATTACCCACCGTGTAGGGAAGCGTTTTTGTGTTAAGTCCGTTTATATTTTAGGTAAGGTATGGATGGACGAGAATATCAAGTTGAAGAACCACACCAACAGTGTTATGTTCTGGCTGGTCAGAGACCGTAGACCCTATGGGACTCCTATGGACTTCGGCCAAGTTTTTAACATGTTTGACAATGAGCCCAGTACTGCCACGGTCAAGAACGATCTTCGTGATCGTTACCAAGTTATGCATAAATTCTATGCTAAGGTGACAGGTGGACAATACGCAAGCAATGAACAAGCGCTGGTCAAGCGTTTCTGGAGGGTCAACAATCACGTGGTGTACAATCATCAAGAAGCCGGGAAATACGAGAATCATACGGAGAACGCACTATTATTGTATATGGCATGTACTCATGCCTCGAACCCTGTGTATGCGACTTTAAAAATTCGGATCTATTTCTATGATTCGATAATAAATTAA
Protein Sequence MPKRDAPWRHMAGTSKISRVANYSPRAGVGPRSNKASEWVNRPMYRKPRIYRMYRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCVSDVTRGNGITHRVGKRFCVKSVYILGKVWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWRVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIIN

NCBI Accession YP_009506522.1
Location 940-1338
Protein Name C3
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCACATCAGGCAGAGAATGGCGTGTATACCTGGGAGATATCAAATCCCCTATATTTCAAGATGTACAATGTGGAGGACCTACTCTACACGAGGACGAGAGTCTACCACGTCCAGATACGGTTCAACCACAACCTGCGGAGAGTGTTGGGTCTCCACAAGGCTTATCTCAACTTCCAAGTTTGGACGACATCCCTGAGAGCTTCTGGGATGAGATATTTAAGTAGATTTAAATTTCTTGTTCAGTTGTATCTAGATCAATTAGGCGTTATTTCAGTTAATAATGTAATTAGAGCTGTTCGTTTCGCAACAGACAAATCATATGTTCATGATGTACTAGAGAATCATTCAATAAAATTCAACATTTATTAA
Protein Sequence MDSRTGELITAHQAENGVYTWEISNPLYFKMYNVEDLLYTRTRVYHVQIRFNHNLRRVLGLHKAYLNFQVWTTSLRASGMRYLSRFKFLVQLYLDQLGVISVNNVIRAVRFATDKSYVHDVLENHSIKFNIY

NCBI Accession YP_009506523.1
Location 1085-1477
Protein Name C2
Coding Region ATGCGCAATTCGTCTTTCTCAACTCCCCCCTCTATCAAAGTTCAACATCGGGCAGCTAAAAGAAAGAGGGCAACACGACGAAGACGAATTGATCTACAGTGCGGGTGCTCCATATACGTTCACATCCACTGCGCAGGGCATGGATTCACGCACAGGGGAACTCATCACTGCACATCAGGCAGAGAATGGCGTGTATACCTGGGAGATATCAAATCCCCTATATTTCAAGATGTACAATGTGGAGGACCTACTCTACACGAGGACGAGAGTCTACCACGTCCAGATACGGTTCAACCACAACCTGCGGAGAGTGTTGGGTCTCCACAAGGCTTATCTCAACTTCCAAGTTTGGACGACATCCCTGAGAGCTTCTGGGATGAGATATTTAAGTAG
Protein Sequence MRNSSFSTPPSIKVQHRAAKRKRATRRRRIDLQCGCSIYVHIHCAGHGFTHRGTHHCTSGREWRVYLGDIKSPIFQDVQCGGPTLHEDESLPRPDTVQPQPAESVGSPQGLSQLPSLDDIPESFWDEIFK

NCBI Accession YP_009506524.1
Location 1419-2474
Protein Name C1
Coding Region ATGCCACTCCCGAAACGATTTCGTTTAAATGCCAAAAACTATTTCCTCACTTATCCTAAGTGTTCTCTTTCGAAAGAAGAAGCACTTTCCCAACTCTTAGCCTTAACAATACCAGTCAATAAACTATTCGTTCGTGTTGCGAGAGAATTACACGAAGATGGGCAACCTCATCTGCACGTCCTCATACAGTTCGAAGGAAAATACCAGTGCACGAACGAACGATTGTTCGACCTTGTATCCCCAACAAGGTCAGCACATTTCCATCCGAACATTCAGGCAGCTAAGAGCTCGTCAGATGTCAAGGCATACGTGGAGAAAGACGGAGACTTCGTTGATCATGGAGTTTTCCAGATCGATGGAAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGACACGTATGCCAAGGTTCTTAACGCAGGATCAGTCATGGAGGCCCTCAATATATTAAAGGAGGAACAGCCAAAAGATTATGTTCTTCAGCATCATAATATTCGTTCGAATTTAGAGCGTATATTTGCAAAGGCTCCAGAACCGTGGGTTCCTCCGTTTCCCCTCTCGTCGTTCACTAACGTGCCTGTCGAGATGCAATCTTGGGCACATGACTATTTCGGAAGGGATGCCGCTGCGCGGCCGGAGAGGCCTATCAGTATAATAATCGAGGGTGATTCAAGGACAGGGAAGACCATGTGGGCACGTGCATTAGGGTCCCACAATTACTTGAGCGGTCACCTCGATTTCAATTCAAAGGTGTATTCAAACGATGTGCAGTATAACGTCATTGATGATGTCGCACCGCACTATCTAAAGTTAAAGCACTGGAAAGAACTTATCGGGGCCCAAAGGGACTGGCAATCAAACTGCAAATACGGAAAGCCAGTTCAAATTAAAGGAGGTATCCCATGCATCGTGCTTTGCAATCCTGGCGAGGGGGCCAGTTATAAATCTTTCCTCGACAAAGAGGAAAACTCAGCATTAAATAATTGGACAAAGCACAATGCGCAATTCGTCTTTCTCAACTCCCCCCTCTATCAAAGTTCAACATCGGGCAGCTAA
Protein Sequence MPLPKRFRLNAKNYFLTYPKCSLSKEEALSQLLALTIPVNKLFVRVARELHEDGQPHLHVLIQFEGKYQCTNERLFDLVSPTRSAHFHPNIQAAKSSSDVKAYVEKDGDFVDHGVFQIDGRSARGGQQSANDTYAKVLNAGSVMEALNILKEEQPKDYVLQHHNIRSNLERIFAKAPEPWVPPFPLSSFTNVPVEMQSWAHDYFGRDAAARPERPISIIIEGDSRTGKTMWARALGSHNYLSGHLDFNSKVYSNDVQYNVIDDVAPHYLKLKHWKELIGAQRDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKSFLDKEENSALNNWTKHNAQFVFLNSPLYQSSTSGS

NCBI Accession YP_009506525.1
Location 2024-2317
Protein Name C4
Coding Region ATGGGCAACCTCATCTGCACGTCCTCATACAGTTCGAAGGAAAATACCAGTGCACGAACGAACGATTGTTCGACCTTGTATCCCCAACAAGGTCAGCACATTTCCATCCGAACATTCAGGCAGCTAAGAGCTCGTCAGATGTCAAGGCATACGTGGAGAAAGACGGAGACTTCGTTGATCATGGAGTTTTCCAGATCGATGGAAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGACACGTATGCCAAGGTTCTTAACGCAGGATCAGTCATGGAGGCCCTCAATATATTAA
Protein Sequence MGNLICTSSYSSKENTSARTNDCSTLYPQQGQHISIRTFRQLRARQMSRHTWRKTETSLIMEFSRSMEDQLEEVSNLPTTRMPRFLTQDQSWRPSIY

References More References in PubMed

1

Tomato chlorosis virus, an emergent plant virus still expanding its geographical and host ranges.

Fiallo-Olivé E, et al.  Mol Plant Pathol. 2019 Sep;20(9):1307-1320. doi: 10.1111/mpp.12847. Epub 2019 Jul 2.

PMID: 31267719

2

First Report of Tomato chlorosis virus Infecting Tomato Crops in Uruguay.

Arruabarrena A, et al.  Plant Dis. 2014 Oct;98(10):1445. doi: 10.1094/PDIS-11-13-1153-PDN.

PMID: 30703967

3

First Report of Tomato chlorosis virus Infecting Tomato in Sudan.

Fiallo-Olivé E, et al.  Plant Dis. 2011 Dec;95(12):1592. doi: 10.1094/PDIS-08-11-0631.

PMID: 30731991

4

First Report of Tomato chlorosis virus in China.

Zhao RN, et al.  Plant Dis. 2013 Aug;97(8):1123. doi: 10.1094/PDIS-12-12-1163-PDN.

PMID: 30722472

5

Infectious Clones of Tomato Chlorosis Virus: Toward Increasing Efficiency by Introducing the Hepatitis Delta Virus Ribozyme.

Navas-Hermosilla E, et al.  Front Microbiol. 2021 Jul 26;12:693457. doi: 10.3389/fmicb.2021.693457. eCollection 2021.

PMID: 34381428

6

First Report of Tomato chlorosis virus Infecting Tomato Crops in Brazil.

Barbosa JC, et al.  Plant Dis. 2008 Dec;92(12):1709. doi: 10.1094/PDIS-92-12-1709C.

PMID: 30764310

7

First Report of Tomato chlorosis virus (ToCV) in Tomato Crops in Saudi Arabia.

Al-Saleh MA, et al.  Plant Dis. 2014 Nov;98(11):1590. doi: 10.1094/PDIS-05-14-0443-PDN.

PMID: 30699840

8

First Report of Tomato chlorosis virus Infecting Tomato in Georgia.

Sundaraj S, et al.  Plant Dis. 2011 Jul;95(7):881. doi: 10.1094/PDIS-02-11-0122.

PMID: 30731721

9

Tobacco: A New Natural Host of Tomato chlorosis virus in Spain.

Fiallo-Olivé E, et al.  Plant Dis. 2014 Aug;98(8):1162. doi: 10.1094/PDIS-01-14-0083-PDN.

PMID: 30708800

10

Complete genomic analysis of tomato chlorosis virus isolates from Sichuan and Chongqing, China.

Yang X, et al.  Virology. 2025 Mar;604:110447. doi: 10.1016/j.virol.2025.110447. Epub 2025 Feb 11.

PMID: 39961259