Tomato golden vein virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_002867655.1 |
| Isolate |
Brazil: Goias |
| Release date |
2018/8/26 |
| Submitter |
Albuquerque,L.C., Varsani,A., Fernandes,F.R., Pinheiro,B., Martin,D.P., de Tarso Oliveira Ferreira,P., Lemos,T.O., Inoue-Nagata,A.K., Martins,D.P., Ferreira,P.T.O. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTTAAAGTGGTCCCACTGTGAGTGACCAATCAGATTGTGTCTTGGACGGTTATTTATTTCGAAATACTTAGGCGCTAAGTTGTTAAAGTTGTATAAATTAGACATTCATAAGTGGTCGACATATTTTAATTCAAAATGCCAAAGCGAGATGCCCCATGGCGTATAGTGGCAGGGACCACGAAAGTATCCCGCTCTTCTAATTATTCACCTCGGGGAGGTATACCCAAGCGGGATGCTTGGGTAAACAGGCCCATGTACAGGAAGCCCAGGATATATCGTACGTTGAGAGGGCCTGATGTTCCTAAAGGGTGTGAAGGCCCATGTAAAGTTCAATCCTATGAGCAACGTCATGACATTTCTCATCTTGGCAAGGTGATGTGTATCTCTGATGTGACACGTGGTAATGGTATTACACACCGTGTTGGTAAGCGTTTTTGCGTTAAGTCTGTGTACATATTGGGTAAGATATGGATGGACGAAAATATTAAACTGAAGAACCATACCAACAGTGTTATTTTTTGGTTAGTGAGGGATCGTAGACCCTATGGGACACCTATGGATTTTGGTCAGGTGTTTAACATGTTTGATAATGAGCCTAGTACTGCTACGGTGAAGAACGATCTTCGTGATCGTTATCAAGTCATTCATCGATTCAATGCTAAGGTTACGGGTGGACAGTATGCTAGCAACGAGCAAGCTCTTGTTCGGCGTTTCTGGAAGGTCAATAATCATGTAGTTTATAATCATCAGGAAGCCAGCGAAGTACGAGAATCCATACCGGAGAATGCTCTGTTATTGTATATGGCATGTACACATGCCTCTAATCCCGTGTATGCTACTTTGAAAATTCGGATCTATTTTTATGATTCGATTTCAAATTAATAAAGTTTAAATTTTATTGAATGATTTTCGAGTACATAATTTACATAAGATTTGTCTGTTGCGAAACGAACAGCTCTGATTACATTGTTAATGGAAATAATACCTAATTGGTTCAGATACAATAAAACGAAATATCTAAATCTAGTTAAATATGTCATCCCAGAAGCTCTCAGGGATGTCGTCCAGACTTGGAAATTTAGAAATGCCTTGTGGAGACCCAACGCTTTCCGCAGGTTGTGGTTGAAACGTATCTGCACATGGTATATCCTGGTCGTTGTATAATAGGGGTCCTCGACGTTGGTTATCTTGAAATAGAGGGGATTTGTAATCTCCCAAATAAAGACGCCATTCTCTGCTTGAGGCACAGTGATGGGTTCCGCGGTGCGTGAATCCATTATTTCTACAGTTGATGTGGATGTATATGGAGCAGCCGCAGTTTAGGTCTATGCGTTTACGCCTGGTTGTTTTCTGTTTGGCGGCTCTGTGCCGTGGCTTGATAGAGGGGGGAGTTGAGGAAGATGAATTTAGCATTATGCAGTGTCCAAGCTCTTAGAGATGCATTTTCATGTTTGTCAAGGAAGTCTTTATAACTAGCCCCCTCTCCTGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACCGGCTTTCCGTACTTGCAATTGCTTTGCCAGTCACGCTGGGACCCAATTAGTTCTTTCCAGTGCTTCATTTTTAGATAATGCGGAGTGACATCATCAATGACGTTATACTCCACTTCATTTGAATAAACTTTAGAATTAAAATCCAAGTGTCCACTTAAATAATTATGTGGTCCTAGTGCACGAGCCCACATAGTCTTCCCCGTCCTAGAATCACCCTCAATGATGATACTAATAGGTCTTTCCGGCCGCGCAGCGGCACCCCTTCCGAAATACTCATCAGCCCATTGCTGCATCTCATCAGGAACGTGAGTAAAGGAAGATAATTCAAATATAGGGACCCATGGGGCTGGAGCCTTTGCAAATATTTTTTGGACATGTGATTGTATTTTGTCCAAATGAAGAACATAATCTCTAGGTTGTTCTTCTTTTAATATATTTAAGGCCTTGGATAGATTTTCTGCGTTTAGAACCTTCGCATAAGTGTCATTGGCAGTTTGGCAGCCTCCTCTTGCTGATCTTCCATCGATCTGGAAATTTCCAAAATCAATGAAGTCTCCGTCTTTTTCCATGTAGGTCTTGACGTCGGACGAGCTTTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGATCTTGTTGGGGATACCAAGTCGAAGAACCGTTGATTCTGGCATTTGAATTTGCCTTCGAATTGAATAAGCACATGGAGATGAGGTTCCCCATCTTCGTGAAATTCTCTGGTTACACGAATAAATTTCTTGTTTGTTGGTGTTTTAAGTGTCTGTAATTGGGAAAGTGTTTCCTCTTTGGTTAATGAACAATGAGGGTATGTAAGGAAGAAATTTTTTGCATTTACAGTGAAACGCTTTGGTGGTGGCATTGTAGTAAATAAGAAGATGAGACCCGATAGCTCTCCTTCAAACTTGGCGAAATGAATTGGGGAATGGGTCTCAATATATAGTAGAGTCCATTATAGAATATAATTGCCACGTGGCGGCCATCCGATATAATATT
Gene Information
|
NCBI Accession
|
YP_009508029.1
|
|
Location
|
156-902 |
|
Protein Name
|
V1 |
|
Coding Region
|
ATGCCAAAGCGAGATGCCCCATGGCGTATAGTGGCAGGGACCACGAAAGTATCCCGCTCTTCTAATTATTCACCTCGGGGAGGTATACCCAAGCGGGATGCTTGGGTAAACAGGCCCATGTACAGGAAGCCCAGGATATATCGTACGTTGAGAGGGCCTGATGTTCCTAAAGGGTGTGAAGGCCCATGTAAAGTTCAATCCTATGAGCAACGTCATGACATTTCTCATCTTGGCAAGGTGATGTGTATCTCTGATGTGACACGTGGTAATGGTATTACACACCGTGTTGGTAAGCGTTTTTGCGTTAAGTCTGTGTACATATTGGGTAAGATATGGATGGACGAAAATATTAAACTGAAGAACCATACCAACAGTGTTATTTTTTGGTTAGTGAGGGATCGTAGACCCTATGGGACACCTATGGATTTTGGTCAGGTGTTTAACATGTTTGATAATGAGCCTAGTACTGCTACGGTGAAGAACGATCTTCGTGATCGTTATCAAGTCATTCATCGATTCAATGCTAAGGTTACGGGTGGACAGTATGCTAGCAACGAGCAAGCTCTTGTTCGGCGTTTCTGGAAGGTCAATAATCATGTAGTTTATAATCATCAGGAAGCCAGCGAAGTACGAGAATCCATACCGGAGAATGCTCTGTTATTGTATATGGCATGTACACATGCCTCTAATCCCGTGTATGCTACTTTGAAAATTCGGATCTATTTTTATGATTCGATTTCAAATTAA |
|
Protein Sequence
|
MPKRDAPWRIVAGTTKVSRSSNYSPRGGIPKRDAWVNRPMYRKPRIYRTLRGPDVPKGCEGPCKVQSYEQRHDISHLGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVIFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVIHRFNAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEASEVRESIPENALLLYMACTHASNPVYATLKIRIYFYDSISN |
|
NCBI Accession
|
YP_009508030.1
|
|
Location
|
899-1297 |
|
Protein Name
|
C3 |
|
Coding Region
|
ATGGATTCACGCACCGCGGAACCCATCACTGTGCCTCAAGCAGAGAATGGCGTCTTTATTTGGGAGATTACAAATCCCCTCTATTTCAAGATAACCAACGTCGAGGACCCCTATTATACAACGACCAGGATATACCATGTGCAGATACGTTTCAACCACAACCTGCGGAAAGCGTTGGGTCTCCACAAGGCATTTCTAAATTTCCAAGTCTGGACGACATCCCTGAGAGCTTCTGGGATGACATATTTAACTAGATTTAGATATTTCGTTTTATTGTATCTGAACCAATTAGGTATTATTTCCATTAACAATGTAATCAGAGCTGTTCGTTTCGCAACAGACAAATCTTATGTAAATTATGTACTCGAAAATCATTCAATAAAATTTAAACTTTATTAA |
|
Protein Sequence
|
MDSRTAEPITVPQAENGVFIWEITNPLYFKITNVEDPYYTTTRIYHVQIRFNHNLRKALGLHKAFLNFQVWTTSLRASGMTYLTRFRYFVLLYLNQLGIISINNVIRAVRFATDKSYVNYVLENHSIKFKLY |
|
NCBI Accession
|
YP_009508031.1
|
|
Location
|
1044-1433 |
|
Protein Name
|
C2 |
|
Coding Region
|
ATGCTAAATTCATCTTCCTCAACTCCCCCCTCTATCAAGCCACGGCACAGAGCCGCCAAACAGAAAACAACCAGGCGTAAACGCATAGACCTAAACTGCGGCTGCTCCATATACATCCACATCAACTGTAGAAATAATGGATTCACGCACCGCGGAACCCATCACTGTGCCTCAAGCAGAGAATGGCGTCTTTATTTGGGAGATTACAAATCCCCTCTATTTCAAGATAACCAACGTCGAGGACCCCTATTATACAACGACCAGGATATACCATGTGCAGATACGTTTCAACCACAACCTGCGGAAAGCGTTGGGTCTCCACAAGGCATTTCTAAATTTCCAAGTCTGGACGACATCCCTGAGAGCTTCTGGGATGACATATTTAACTAG |
|
Protein Sequence
|
MLNSSSSTPPSIKPRHRAAKQKTTRRKRIDLNCGCSIYIHINCRNNGFTHRGTHHCASSREWRLYLGDYKSPLFQDNQRRGPLLYNDQDIPCADTFQPQPAESVGSPQGISKFPSLDDIPESFWDDIFN |
|
NCBI Accession
|
YP_009508032.1
|
|
Location
|
1354-2430 |
|
Protein Name
|
C1 |
|
Coding Region
|
ATGCCACCACCAAAGCGTTTCACTGTAAATGCAAAAAATTTCTTCCTTACATACCCTCATTGTTCATTAACCAAAGAGGAAACACTTTCCCAATTACAGACACTTAAAACACCAACAAACAAGAAATTTATTCGTGTAACCAGAGAATTTCACGAAGATGGGGAACCTCATCTCCATGTGCTTATTCAATTCGAAGGCAAATTCAAATGCCAGAATCAACGGTTCTTCGACTTGGTATCCCCAACAAGATCAGCACATTTCCATCCAAACATTCAGGGAGCTAAAAGCTCGTCCGACGTCAAGACCTACATGGAAAAAGACGGAGACTTCATTGATTTTGGAAATTTCCAGATCGATGGAAGATCAGCAAGAGGAGGCTGCCAAACTGCCAATGACACTTATGCGAAGGTTCTAAACGCAGAAAATCTATCCAAGGCCTTAAATATATTAAAAGAAGAACAACCTAGAGATTATGTTCTTCATTTGGACAAAATACAATCACATGTCCAAAAAATATTTGCAAAGGCTCCAGCCCCATGGGTCCCTATATTTGAATTATCTTCCTTTACTCACGTTCCTGATGAGATGCAGCAATGGGCTGATGAGTATTTCGGAAGGGGTGCCGCTGCGCGGCCGGAAAGACCTATTAGTATCATCATTGAGGGTGATTCTAGGACGGGGAAGACTATGTGGGCTCGTGCACTAGGACCACATAATTATTTAAGTGGACACTTGGATTTTAATTCTAAAGTTTATTCAAATGAAGTGGAGTATAACGTCATTGATGATGTCACTCCGCATTATCTAAAAATGAAGCACTGGAAAGAACTAATTGGGTCCCAGCGTGACTGGCAAAGCAATTGCAAGTACGGAAAGCCGGTTCAAATTAAAGGAGGGATCCCATCAATCGTGCTTTGCAATCCAGGAGAGGGGGCTAGTTATAAAGACTTCCTTGACAAACATGAAAATGCATCTCTAAGAGCTTGGACACTGCATAATGCTAAATTCATCTTCCTCAACTCCCCCCTCTATCAAGCCACGGCACAGAGCCGCCAAACAGAAAACAACCAGGCGTAA |
|
Protein Sequence
|
MPPPKRFTVNAKNFFLTYPHCSLTKEETLSQLQTLKTPTNKKFIRVTREFHEDGEPHLHVLIQFEGKFKCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKTYMEKDGDFIDFGNFQIDGRSARGGCQTANDTYAKVLNAENLSKALNILKEEQPRDYVLHLDKIQSHVQKIFAKAPAPWVPIFELSSFTHVPDEMQQWADEYFGRGAAARPERPISIIIEGDSRTGKTMWARALGPHNYLSGHLDFNSKVYSNEVEYNVIDDVTPHYLKMKHWKELIGSQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKHENASLRAWTLHNAKFIFLNSPLYQATAQSRQTENNQA |
|
NCBI Accession
|
YP_009508033.1
|
|
Location
|
2016-2273 |
|
Protein Name
|
C4 |
|
Coding Region
|
ATGGGGAACCTCATCTCCATGTGCTTATTCAATTCGAAGGCAAATTCAAATGCCAGAATCAACGGTTCTTCGACTTGGTATCCCCAACAAGATCAGCACATTTCCATCCAAACATTCAGGGAGCTAAAAGCTCGTCCGACGTCAAGACCTACATGGAAAAAGACGGAGACTTCATTGATTTTGGAAATTTCCAGATCGATGGAAGATCAGCAAGAGGAGGCTGCCAAACTGCCAATGACACTTATGCGAAGGTTCTAA |
|
Protein Sequence
|
MGNLISMCLFNSKANSNARINGSSTWYPQQDQHISIQTFRELKARPTSRPTWKKTETSLILEISRSMEDQQEEAAKLPMTLMRRF |