Tomato golden mottle virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_000839225.1 |
| Isolate | Mexico |
| Release date | 2015/2/12 |
| Submitter | Mauricio-Castillo,J.A., Arguello-Astorga,G.R., Gregorio-Jorge,J., Ambriz-Granados,S., Alpuche-Solis,A.G., Monreal-Vargas,C.T. |
| Host | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_008058
Gene Information
| NCBI Accession | YP_619880.1 |
|---|---|
| Location | 197-952 |
| Gene Name | AV1 |
| Protein Name | coat protein |
| Coding Region | ATGCCAAAGCGCGATGCTCCGTGGCGATTGATGGGGGGGACCTCAAAAGTGAGCCGGTCCTCCAACCAGTCTCCCAGGACTGGTACTGGGCCTAAATTTGACAAGGCCCATGCATGGGTTAACAGGCCTATGTACAGGAAGCCCAGGATATATCGGGCTTGGAGAACACCCGACGTTCCTAGAGGCTGTGAAGGCCCATGTAAGGTCCAGTCATTTGAACAACGTCATGATATCTCCCATGTTGGTAAGGTGATGTGCATATCGGACGTCACCCGTGGTAACGGTATCACTCACCGCGTTGGTAAGCGTTTTTGTGTTAAGTCCGTGTATATATTAGGCAAGATCTGGATGGATGACAACATCAAATTGAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTCAGGGATAGGAGACCATATGGTACTCCTATGGATTTTGGCCAAGTGTTCAATATGTACGACAATGAGCCTAGTACTGCTACTGTGAAGAACGATCTTCGTGATTGTTATCAGGTAGTCCACAGATTTTATGCTAAGGTCACTGGTGGTCAGTATGCCAGCAATGAGCAGGCTCTTGTCAGACGATTCTGGAAGGTGAACAACCATGTGGTGTACAACCATCAGGAAGCCGGGAAGTATGAGAACCACACAGAGAATGCTCTGTTATTGTATATGGCGTGTACTCATGCTTTTAATCCTGTATATGCAACTTTGAAAATTCGGATCTATTTTTATGATTCGATAAGTAATTAA |
| Protein Sequence | MPKRDAPWRLMGGTSKVSRSSNQSPRTGTGPKFDKAHAWVNRPMYRKPRIYRAWRTPDVPRGCEGPCKVQSFEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDDNIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATVKNDLRDCYQVVHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHAFNPVYATLKIRIYFYDSISN |
| NCBI Accession | YP_619881.1 |
|---|---|
| Location | 949-1347 |
| Gene Name | AC3 |
| Protein Name | replication enhancer protein |
| Coding Region | ATGGATTCACGCACAGGGGAACCCATCACTGCTCGTCAAGCAGGGAATGGCGTTTTTATTTGGGATGTTCCAAATCCCCTCTATTTCAAGATATACAACGTAGAGGATCTCCTATACACGAACATCAGGATATACCACGTGCAGATCAGGTTCAACCACAACGTGAGGAAAGCTTTGGATCTACACAAGGCATACCTAAATTTCCAAGTCTGGACGACATCCCTGACGGCTTCTGGGACGACTTATTTGAATCGGTTTAGGAGTTTAGTTTTATTGTACTTAGATAGATTAGGTGTTATTTCACTTAATAATGTCATTCGTGCTGTTCGCTTCGCAACAGATAAACCATATGTAAATCATGTATTAGAAAGACATTCAATAAAATTCAAAATTTATTAA |
| Protein Sequence | MDSRTGEPITARQAGNGVFIWDVPNPLYFKIYNVEDLLYTNIRIYHVQIRFNHNVRKALDLHKAYLNFQVWTTSLTASGTTYLNRFRSLVLLYLDRLGVISLNNVIRAVRFATDKPYVNHVLERHSIKFKIY |
| NCBI Accession | YP_619882.1 |
|---|---|
| Location | 1088-1483 |
| Gene Name | AC2 |
| Protein Name | transactivator protein TrAP |
| Coding Region | ATGCAGAATTCGTCTTCCTCGACGCCCCCCTCTATCAAACCTAAACACAGGATTGCAAAACGAAAGGGAATACGTCGAAAACGTATAGACTTGGACTGCGGCCGTACAATATACGTGCACATCAACTGCGCCAACAATGGATTCACGCACAGGGGAACCCATCACTGCTCGTCAAGCAGGGAATGGCGTTTTTATTTGGGATGTTCCAAATCCCCTCTATTTCAAGATATACAACGTAGAGGATCTCCTATACACGAACATCAGGATATACCACGTGCAGATCAGGTTCAACCACAACGTGAGGAAAGCTTTGGATCTACACAAGGCATACCTAAATTTCCAAGTCTGGACGACATCCCTGACGGCTTCTGGGACGACTTATTTGAATCGGTTTAG |
| Protein Sequence | MQNSSSSTPPSIKPKHRIAKRKGIRRKRIDLDCGRTIYVHINCANNGFTHRGTHHCSSSREWRFYLGCSKSPLFQDIQRRGSPIHEHQDIPRADQVQPQREESFGSTQGIPKFPSLDDIPDGFWDDLFESV |
| NCBI Accession | YP_619883.1 |
|---|---|
| Location | 1440-2480 |
| Gene Name | AC1 |
| Protein Name | replication protein |
| Coding Region | ATGCCACCACCAAGACGTTTCAGACTTCAAGCAAAAAATATATTCCTAACATACCCATTATGCTCTCTTACTAAAGATGAAGCATTAGAGCAATTACAATCAATACAACTAACTTCGAATAAACGATATATCAAGATTTGCAGAGAGCTTCACGAGAATGGGAAACCTCATCTCCATGCCCTTGTCCAACTTGAAGGAAAAGTCCAGATCACGAATGAACGACAGTTCGATCTGGTATCCCCAACCAGATCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCTAGTTCCGATGTCAAATCATATATCGACAAAGATGGAGATACCCTCGAATGGGGAGAATTTCAAATCGATGGCAGATCTGCTAGAGGAGGTCAGCAGACTGCAAACGACTCGTATGCCAAGGCGCTTAACGCAAATGGAGTGCAAGAGGCACTCCAAATTTTAAAGGAAGAACAACCTAGGGATTTTGTTAAAGATTTTCACAATCTCAAGGGTAACCTTGAGAAGATATTTACAAAAGCTCCAGAACCATGGGTTCCTCCATTTTCACTCTCCTCATTTAACAACGTGCCTGAGGAGTTACAGTCATGGGCTGATGATTATTTTGGAAATGGTTGCGCTGCGCGGACATTAAGACCTATCAGTATCATCATCGAAGGTGATTCAAGAACGGGAAAGACGATGTGGGCTCGTTCATTAGGAATTCATAATTATTTGAGTGGTCATCTAGATTTCAATTCTAGAGTTTACTCAAACGATGTTATGTACAACGTCATTGATGACGTACCACCGCACTATCTAAAGATGAAACACTGGAAAGAGCTCATTGGGGCCCAGACAGACTGGCAGACCAACTGTAAATACGGGAAACCCATTCAAATTAAAGGTGGCATTCCATCAATCGTGCTATGCAATCCTGGTGAGGGGGCTAGCTATAAATACTACCTCGACAAACAGGAAAACTCACATCTCAAGGCGTGGACACATCACAATGCAGAATTCGTCTTCCTCGACGCCCCCCTCTATCAAACCTAA |
| Protein Sequence | MPPPRRFRLQAKNIFLTYPLCSLTKDEALEQLQSIQLTSNKRYIKICRELHENGKPHLHALVQLEGKVQITNERQFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQTANDSYAKALNANGVQEALQILKEEQPRDFVKDFHNLKGNLEKIFTKAPEPWVPPFSLSSFNNVPEELQSWADDYFGNGCAARTLRPISIIIEGDSRTGKTMWARSLGIHNYLSGHLDFNSRVYSNDVMYNVIDDVPPHYLKMKHWKELIGAQTDWQTNCKYGKPIQIKGGIPSIVLCNPGEGASYKYYLDKQENSHLKAWTHHNAEFVFLDAPLYQT |
| NCBI Accession | YP_619884.1 |
|---|---|
| Location | 2030-2323 |
| Gene Name | AC4 |
| Protein Name | AC4 |
| Coding Region | ATGGGAAACCTCATCTCCATGCCCTTGTCCAACTTGAAGGAAAAGTCCAGATCACGAATGAACGACAGTTCGATCTGGTATCCCCAACCAGATCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCTAGTTCCGATGTCAAATCATATATCGACAAAGATGGAGATACCCTCGAATGGGGAGAATTTCAAATCGATGGCAGATCTGCTAGAGGAGGTCAGCAGACTGCAAACGACTCGTATGCCAAGGCGCTTAACGCAAATGGAGTGCAAGAGGCACTCCAAATTTTAA |
| Protein Sequence | MGNLISMPLSNLKEKSRSRMNDSSIWYPQPDQHISIRTFRELNLVPMSNHISTKMEIPSNGENFKSMADLLEEVSRLQTTRMPRRLTQMECKRHSKF |
References More References in PubMed
| 1 |
Mauricio-Castillo JA, et al. Plant Dis. 2007 Nov;91(11):1513. doi: 10.1094/PDIS-91-11-1513B. PMID: 30780772 |
|---|---|
| 2 |
Martins TP, et al. Arch Virol. 2021 Nov;166(11):3217-3220. doi: 10.1007/s00705-021-05220-w. Epub 2021 Sep 8. PMID: 34498121 |
| 3 |
Ramos PL, et al. Arch Virol. 2003 Sep;148(9):1697-712. doi: 10.1007/s00705-003-0136-3. PMID: 14505083 |
| 4 |
Interactions between Common Bean Viruses and Their Whitefly Vector. Ferreira AL, et al. Viruses. 2024 Oct 2;16(10):1567. doi: 10.3390/v16101567. PMID: 39459901 |
| 5 |
Recombinase polymerase amplification applied to plant virus detection and potential implications. Babu B, et al. Anal Biochem. 2018 Apr 1;546:72-77. doi: 10.1016/j.ab.2018.01.021. Epub 2018 Jan 31. PMID: 29408177 |
| 6 |
First Report of Tomato yellow leaf curl virus in Tomato in Costa Rica. Barboza N, et al. Plant Dis. 2014 May;98(5):699. doi: 10.1094/PDIS-08-13-0881-PDN. PMID: 30708517 |
| 7 |
Further characterization of tomato-infecting begomoviruses in Brazil. Albuquerque LC, et al. Arch Virol. 2012 Apr;157(4):747-52. doi: 10.1007/s00705-011-1213-7. Epub 2012 Jan 5. PMID: 22218964 |
| 8 |
Castro RM, et al. Plant Pathol J. 2013 Sep;29(3):285-93. doi: 10.5423/PPJ.OA.12.2012.0182. PMID: 25288955 |
| 9 |
Geminiviruses Infecting Tomato Crops in Nicaragua. Rojas A, et al. Plant Dis. 2000 Aug;84(8):843-846. doi: 10.1094/PDIS.2000.84.8.843. PMID: 30832136 |
| 10 |
Lanai: A small, fast growing tomato variety is an excellent model system for studying geminiviruses. Rajabu CA, et al. J Virol Methods. 2018 Jun;256:89-99. doi: 10.1016/j.jviromet.2018.03.002. Epub 2018 Mar 9. PMID: 29530481 |