Tomato golden mottle virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000839225.1
Isolate Mexico
Release date 2015/2/12
Submitter Mauricio-Castillo,J.A., Arguello-Astorga,G.R., Gregorio-Jorge,J., Ambriz-Granados,S., Alpuche-Solis,A.G., Monreal-Vargas,C.T.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_008058
ACCGGATGGCCGCGCGATTTTTACCCGACCCGGGCCCATTAATGAAATATTCTCGGGTTATGCAATGATGATAAATATGGCTGTCCAATCACATGACGTCTGCTGGGTCTAATTAGTGGTCCTTGGTAGACAAGAATGGACCCGGATATCTATAAATATTAAAGTGAATCCCACTATTGTATATCTTTAATTTGAAATGCCAAAGCGCGATGCTCCGTGGCGATTGATGGGGGGGACCTCAAAAGTGAGCCGGTCCTCCAACCAGTCTCCCAGGACTGGTACTGGGCCTAAATTTGACAAGGCCCATGCATGGGTTAACAGGCCTATGTACAGGAAGCCCAGGATATATCGGGCTTGGAGAACACCCGACGTTCCTAGAGGCTGTGAAGGCCCATGTAAGGTCCAGTCATTTGAACAACGTCATGATATCTCCCATGTTGGTAAGGTGATGTGCATATCGGACGTCACCCGTGGTAACGGTATCACTCACCGCGTTGGTAAGCGTTTTTGTGTTAAGTCCGTGTATATATTAGGCAAGATCTGGATGGATGACAACATCAAATTGAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTCAGGGATAGGAGACCATATGGTACTCCTATGGATTTTGGCCAAGTGTTCAATATGTACGACAATGAGCCTAGTACTGCTACTGTGAAGAACGATCTTCGTGATTGTTATCAGGTAGTCCACAGATTTTATGCTAAGGTCACTGGTGGTCAGTATGCCAGCAATGAGCAGGCTCTTGTCAGACGATTCTGGAAGGTGAACAACCATGTGGTGTACAACCATCAGGAAGCCGGGAAGTATGAGAACCACACAGAGAATGCTCTGTTATTGTATATGGCGTGTACTCATGCTTTTAATCCTGTATATGCAACTTTGAAAATTCGGATCTATTTTTATGATTCGATAAGTAATTAATAAATTTTGAATTTTATTGAATGTCTTTCTAATACATGATTTACATATGGTTTATCTGTTGCGAAGCGAACAGCACGAATGACATTATTAAGTGAAATAACACCTAATCTATCTAAGTACAATAAAACTAAACTCCTAAACCGATTCAAATAAGTCGTCCCAGAAGCCGTCAGGGATGTCGTCCAGACTTGGAAATTTAGGTATGCCTTGTGTAGATCCAAAGCTTTCCTCACGTTGTGGTTGAACCTGATCTGCACGTGGTATATCCTGATGTTCGTGTATAGGAGATCCTCTACGTTGTATATCTTGAAATAGAGGGGATTTGGAACATCCCAAATAAAAACGCCATTCCCTGCTTGACGAGCAGTGATGGGTTCCCCTGTGCGTGAATCCATTGTTGGCGCAGTTGATGTGCACGTATATTGTACGGCCGCAGTCCAAGTCTATACGTTTTCGACGTATTCCCTTTCGTTTTGCAATCCTGTGTTTAGGTTTGATAGAGGGGGGCGTCGAGGAAGACGAATTCTGCATTGTGATGTGTCCACGCCTTGAGATGTGAGTTTTCCTGTTTGTCGAGGTAGTATTTATAGCTAGCCCCCTCACCAGGATTGCATAGCACGATTGATGGAATGCCACCTTTAATTTGAATGGGTTTCCCGTATTTACAGTTGGTCTGCCAGTCTGTCTGGGCCCCAATGAGCTCTTTCCAGTGTTTCATCTTTAGATAGTGCGGTGGTACGTCATCAATGACGTTGTACATAACATCGTTTGAGTAAACTCTAGAATTGAAATCTAGATGACCACTCAAATAATTATGAATTCCTAATGAACGAGCCCACATCGTCTTTCCCGTTCTTGAATCACCTTCGATGATGATACTGATAGGTCTTAATGTCCGCGCAGCGCAACCATTTCCAAAATAATCATCAGCCCATGACTGTAACTCCTCAGGCACGTTGTTAAATGAGGAGAGTGAAAATGGAGGAACCCATGGTTCTGGAGCTTTTGTAAATATCTTCTCAAGGTTACCCTTGAGATTGTGAAAATCTTTAACAAAATCCCTAGGTTGTTCTTCCTTTAAAATTTGGAGTGCCTCTTGCACTCCATTTGCGTTAAGCGCCTTGGCATACGAGTCGTTTGCAGTCTGCTGACCTCCTCTAGCAGATCTGCCATCGATTTGAAATTCTCCCCATTCGAGGGTATCTCCATCTTTGTCGATATATGATTTGACATCGGAACTAGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGATCTGGTTGGGGATACCAGATCGAACTGTCGTTCATTCGTGATCTGGACTTTTCCTTCAAGTTGGACAAGGGCATGGAGATGAGGTTTCCCATTCTCGTGAAGCTCTCTGCAAATCTTGATATATCGTTTATTCGAAGTTAGTTGTATTGATTGTAATTGCTCTAATGCTTCATCTTTAGTAAGAGAGCATAATGGGTATGTTAGGAATATATTTTTTGCTTGAAGTCTGAAACGTCTTGGTGGTGGCATATTTGTAATTAAAGGGTGTACTCCAATTGAGCTCCTCTCAACTTGGCGAAACAAATTGGAGTATTGGAGTACAATTTATACTAAAACCTAAGATAGCGCTTGGAGACACGTGGCGGCCATCCGTTTATAATATT

Gene Information

NCBI Accession YP_619880.1
Location 197-952
Gene Name AV1
Protein Name coat protein
Coding Region ATGCCAAAGCGCGATGCTCCGTGGCGATTGATGGGGGGGACCTCAAAAGTGAGCCGGTCCTCCAACCAGTCTCCCAGGACTGGTACTGGGCCTAAATTTGACAAGGCCCATGCATGGGTTAACAGGCCTATGTACAGGAAGCCCAGGATATATCGGGCTTGGAGAACACCCGACGTTCCTAGAGGCTGTGAAGGCCCATGTAAGGTCCAGTCATTTGAACAACGTCATGATATCTCCCATGTTGGTAAGGTGATGTGCATATCGGACGTCACCCGTGGTAACGGTATCACTCACCGCGTTGGTAAGCGTTTTTGTGTTAAGTCCGTGTATATATTAGGCAAGATCTGGATGGATGACAACATCAAATTGAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTCAGGGATAGGAGACCATATGGTACTCCTATGGATTTTGGCCAAGTGTTCAATATGTACGACAATGAGCCTAGTACTGCTACTGTGAAGAACGATCTTCGTGATTGTTATCAGGTAGTCCACAGATTTTATGCTAAGGTCACTGGTGGTCAGTATGCCAGCAATGAGCAGGCTCTTGTCAGACGATTCTGGAAGGTGAACAACCATGTGGTGTACAACCATCAGGAAGCCGGGAAGTATGAGAACCACACAGAGAATGCTCTGTTATTGTATATGGCGTGTACTCATGCTTTTAATCCTGTATATGCAACTTTGAAAATTCGGATCTATTTTTATGATTCGATAAGTAATTAA
Protein Sequence MPKRDAPWRLMGGTSKVSRSSNQSPRTGTGPKFDKAHAWVNRPMYRKPRIYRAWRTPDVPRGCEGPCKVQSFEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDDNIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATVKNDLRDCYQVVHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHAFNPVYATLKIRIYFYDSISN

NCBI Accession YP_619881.1
Location 949-1347
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAACCCATCACTGCTCGTCAAGCAGGGAATGGCGTTTTTATTTGGGATGTTCCAAATCCCCTCTATTTCAAGATATACAACGTAGAGGATCTCCTATACACGAACATCAGGATATACCACGTGCAGATCAGGTTCAACCACAACGTGAGGAAAGCTTTGGATCTACACAAGGCATACCTAAATTTCCAAGTCTGGACGACATCCCTGACGGCTTCTGGGACGACTTATTTGAATCGGTTTAGGAGTTTAGTTTTATTGTACTTAGATAGATTAGGTGTTATTTCACTTAATAATGTCATTCGTGCTGTTCGCTTCGCAACAGATAAACCATATGTAAATCATGTATTAGAAAGACATTCAATAAAATTCAAAATTTATTAA
Protein Sequence MDSRTGEPITARQAGNGVFIWDVPNPLYFKIYNVEDLLYTNIRIYHVQIRFNHNVRKALDLHKAYLNFQVWTTSLTASGTTYLNRFRSLVLLYLDRLGVISLNNVIRAVRFATDKPYVNHVLERHSIKFKIY

NCBI Accession YP_619882.1
Location 1088-1483
Gene Name AC2
Protein Name transactivator protein TrAP
Coding Region ATGCAGAATTCGTCTTCCTCGACGCCCCCCTCTATCAAACCTAAACACAGGATTGCAAAACGAAAGGGAATACGTCGAAAACGTATAGACTTGGACTGCGGCCGTACAATATACGTGCACATCAACTGCGCCAACAATGGATTCACGCACAGGGGAACCCATCACTGCTCGTCAAGCAGGGAATGGCGTTTTTATTTGGGATGTTCCAAATCCCCTCTATTTCAAGATATACAACGTAGAGGATCTCCTATACACGAACATCAGGATATACCACGTGCAGATCAGGTTCAACCACAACGTGAGGAAAGCTTTGGATCTACACAAGGCATACCTAAATTTCCAAGTCTGGACGACATCCCTGACGGCTTCTGGGACGACTTATTTGAATCGGTTTAG
Protein Sequence MQNSSSSTPPSIKPKHRIAKRKGIRRKRIDLDCGRTIYVHINCANNGFTHRGTHHCSSSREWRFYLGCSKSPLFQDIQRRGSPIHEHQDIPRADQVQPQREESFGSTQGIPKFPSLDDIPDGFWDDLFESV

NCBI Accession YP_619883.1
Location 1440-2480
Gene Name AC1
Protein Name replication protein
Coding Region ATGCCACCACCAAGACGTTTCAGACTTCAAGCAAAAAATATATTCCTAACATACCCATTATGCTCTCTTACTAAAGATGAAGCATTAGAGCAATTACAATCAATACAACTAACTTCGAATAAACGATATATCAAGATTTGCAGAGAGCTTCACGAGAATGGGAAACCTCATCTCCATGCCCTTGTCCAACTTGAAGGAAAAGTCCAGATCACGAATGAACGACAGTTCGATCTGGTATCCCCAACCAGATCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCTAGTTCCGATGTCAAATCATATATCGACAAAGATGGAGATACCCTCGAATGGGGAGAATTTCAAATCGATGGCAGATCTGCTAGAGGAGGTCAGCAGACTGCAAACGACTCGTATGCCAAGGCGCTTAACGCAAATGGAGTGCAAGAGGCACTCCAAATTTTAAAGGAAGAACAACCTAGGGATTTTGTTAAAGATTTTCACAATCTCAAGGGTAACCTTGAGAAGATATTTACAAAAGCTCCAGAACCATGGGTTCCTCCATTTTCACTCTCCTCATTTAACAACGTGCCTGAGGAGTTACAGTCATGGGCTGATGATTATTTTGGAAATGGTTGCGCTGCGCGGACATTAAGACCTATCAGTATCATCATCGAAGGTGATTCAAGAACGGGAAAGACGATGTGGGCTCGTTCATTAGGAATTCATAATTATTTGAGTGGTCATCTAGATTTCAATTCTAGAGTTTACTCAAACGATGTTATGTACAACGTCATTGATGACGTACCACCGCACTATCTAAAGATGAAACACTGGAAAGAGCTCATTGGGGCCCAGACAGACTGGCAGACCAACTGTAAATACGGGAAACCCATTCAAATTAAAGGTGGCATTCCATCAATCGTGCTATGCAATCCTGGTGAGGGGGCTAGCTATAAATACTACCTCGACAAACAGGAAAACTCACATCTCAAGGCGTGGACACATCACAATGCAGAATTCGTCTTCCTCGACGCCCCCCTCTATCAAACCTAA
Protein Sequence MPPPRRFRLQAKNIFLTYPLCSLTKDEALEQLQSIQLTSNKRYIKICRELHENGKPHLHALVQLEGKVQITNERQFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQTANDSYAKALNANGVQEALQILKEEQPRDFVKDFHNLKGNLEKIFTKAPEPWVPPFSLSSFNNVPEELQSWADDYFGNGCAARTLRPISIIIEGDSRTGKTMWARSLGIHNYLSGHLDFNSRVYSNDVMYNVIDDVPPHYLKMKHWKELIGAQTDWQTNCKYGKPIQIKGGIPSIVLCNPGEGASYKYYLDKQENSHLKAWTHHNAEFVFLDAPLYQT

NCBI Accession YP_619884.1
Location 2030-2323
Gene Name AC4
Protein Name AC4
Coding Region ATGGGAAACCTCATCTCCATGCCCTTGTCCAACTTGAAGGAAAAGTCCAGATCACGAATGAACGACAGTTCGATCTGGTATCCCCAACCAGATCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCTAGTTCCGATGTCAAATCATATATCGACAAAGATGGAGATACCCTCGAATGGGGAGAATTTCAAATCGATGGCAGATCTGCTAGAGGAGGTCAGCAGACTGCAAACGACTCGTATGCCAAGGCGCTTAACGCAAATGGAGTGCAAGAGGCACTCCAAATTTTAA
Protein Sequence MGNLISMPLSNLKEKSRSRMNDSSIWYPQPDQHISIRTFRELNLVPMSNHISTKMEIPSNGENFKSMADLLEEVSRLQTTRMPRRLTQMECKRHSKF

References More References in PubMed

1

First Report of Tomato golden mottle virus on Lycopersicon esculentum and Solanum rostratum in Mexico.

Mauricio-Castillo JA, et al.  Plant Dis. 2007 Nov;91(11):1513. doi: 10.1094/PDIS-91-11-1513B.

PMID: 30780772
2

Tomato mottle Taino virus pseudorecombines with PYMV but not with ToMoV: implications for the delimitation of cis- and trans-acting replication specificity determinants.

Ramos PL, et al.  Arch Virol. 2003 Sep;148(9):1697-712. doi: 10.1007/s00705-003-0136-3.

PMID: 14505083
3

Nanopore sequencing of tomato mottle leaf distortion virus, a new bipartite begomovirus infecting tomato in Brazil.

Martins TP, et al.  Arch Virol. 2021 Nov;166(11):3217-3220. doi: 10.1007/s00705-021-05220-w. Epub 2021 Sep 8.

PMID: 34498121
4

First Report of Tomato yellow leaf curl virus in Tomato in Costa Rica.

Barboza N, et al.  Plant Dis. 2014 May;98(5):699. doi: 10.1094/PDIS-08-13-0881-PDN.

PMID: 30708517
5

Interactions between Common Bean Viruses and Their Whitefly Vector.

Ferreira AL, et al.  Viruses. 2024 Oct 2;16(10):1567. doi: 10.3390/v16101567.

PMID: 39459901
6

Recombinase polymerase amplification applied to plant virus detection and potential implications.

Babu B, et al.  Anal Biochem. 2018 Apr 1;546:72-77. doi: 10.1016/j.ab.2018.01.021. Epub 2018 Jan 31.

PMID: 29408177
7

Further characterization of tomato-infecting begomoviruses in Brazil.

Albuquerque LC, et al.  Arch Virol. 2012 Apr;157(4):747-52. doi: 10.1007/s00705-011-1213-7. Epub 2012 Jan 5.

PMID: 22218964
8

Occurrence of Squash yellow mild mottle virus and Pepper golden mosaic virus in Potential New Hosts in Costa Rica.

Castro RM, et al.  Plant Pathol J. 2013 Sep;29(3):285-93. doi: 10.5423/PPJ.OA.12.2012.0182.

PMID: 25288955
9

Characterization and distribution of tomato yellow margin leaf curl virus, a begomovirus from Venezuela.

Nava A, et al.  Arch Virol. 2013 Feb;158(2):399-406. doi: 10.1007/s00705-012-1501-x. Epub 2012 Oct 14.

PMID: 23064695
10

Molecular characterization and experimental host range of an isolate of Wissadula golden mosaic St. Thomas virus.

Collins AM, et al.  Virus Genes. 2009 Dec;39(3):387-95. doi: 10.1007/s11262-009-0401-y. Epub 2009 Sep 20.

PMID: 19768650