Tomato golden mottle virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000839225.1 |
| Isolate |
Mexico |
| Release date |
2015/2/12 |
| Submitter |
Mauricio-Castillo,J.A., Arguello-Astorga,G.R., Gregorio-Jorge,J., Ambriz-Granados,S., Alpuche-Solis,A.G., Monreal-Vargas,C.T. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTACCCGACCCGGGCCCATTAATGAAATATTCTCGGGTTATGCAATGATGATAAATATGGCTGTCCAATCACATGACGTCTGCTGGGTCTAATTAGTGGTCCTTGGTAGACAAGAATGGACCCGGATATCTATAAATATTAAAGTGAATCCCACTATTGTATATCTTTAATTTGAAATGCCAAAGCGCGATGCTCCGTGGCGATTGATGGGGGGGACCTCAAAAGTGAGCCGGTCCTCCAACCAGTCTCCCAGGACTGGTACTGGGCCTAAATTTGACAAGGCCCATGCATGGGTTAACAGGCCTATGTACAGGAAGCCCAGGATATATCGGGCTTGGAGAACACCCGACGTTCCTAGAGGCTGTGAAGGCCCATGTAAGGTCCAGTCATTTGAACAACGTCATGATATCTCCCATGTTGGTAAGGTGATGTGCATATCGGACGTCACCCGTGGTAACGGTATCACTCACCGCGTTGGTAAGCGTTTTTGTGTTAAGTCCGTGTATATATTAGGCAAGATCTGGATGGATGACAACATCAAATTGAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTCAGGGATAGGAGACCATATGGTACTCCTATGGATTTTGGCCAAGTGTTCAATATGTACGACAATGAGCCTAGTACTGCTACTGTGAAGAACGATCTTCGTGATTGTTATCAGGTAGTCCACAGATTTTATGCTAAGGTCACTGGTGGTCAGTATGCCAGCAATGAGCAGGCTCTTGTCAGACGATTCTGGAAGGTGAACAACCATGTGGTGTACAACCATCAGGAAGCCGGGAAGTATGAGAACCACACAGAGAATGCTCTGTTATTGTATATGGCGTGTACTCATGCTTTTAATCCTGTATATGCAACTTTGAAAATTCGGATCTATTTTTATGATTCGATAAGTAATTAATAAATTTTGAATTTTATTGAATGTCTTTCTAATACATGATTTACATATGGTTTATCTGTTGCGAAGCGAACAGCACGAATGACATTATTAAGTGAAATAACACCTAATCTATCTAAGTACAATAAAACTAAACTCCTAAACCGATTCAAATAAGTCGTCCCAGAAGCCGTCAGGGATGTCGTCCAGACTTGGAAATTTAGGTATGCCTTGTGTAGATCCAAAGCTTTCCTCACGTTGTGGTTGAACCTGATCTGCACGTGGTATATCCTGATGTTCGTGTATAGGAGATCCTCTACGTTGTATATCTTGAAATAGAGGGGATTTGGAACATCCCAAATAAAAACGCCATTCCCTGCTTGACGAGCAGTGATGGGTTCCCCTGTGCGTGAATCCATTGTTGGCGCAGTTGATGTGCACGTATATTGTACGGCCGCAGTCCAAGTCTATACGTTTTCGACGTATTCCCTTTCGTTTTGCAATCCTGTGTTTAGGTTTGATAGAGGGGGGCGTCGAGGAAGACGAATTCTGCATTGTGATGTGTCCACGCCTTGAGATGTGAGTTTTCCTGTTTGTCGAGGTAGTATTTATAGCTAGCCCCCTCACCAGGATTGCATAGCACGATTGATGGAATGCCACCTTTAATTTGAATGGGTTTCCCGTATTTACAGTTGGTCTGCCAGTCTGTCTGGGCCCCAATGAGCTCTTTCCAGTGTTTCATCTTTAGATAGTGCGGTGGTACGTCATCAATGACGTTGTACATAACATCGTTTGAGTAAACTCTAGAATTGAAATCTAGATGACCACTCAAATAATTATGAATTCCTAATGAACGAGCCCACATCGTCTTTCCCGTTCTTGAATCACCTTCGATGATGATACTGATAGGTCTTAATGTCCGCGCAGCGCAACCATTTCCAAAATAATCATCAGCCCATGACTGTAACTCCTCAGGCACGTTGTTAAATGAGGAGAGTGAAAATGGAGGAACCCATGGTTCTGGAGCTTTTGTAAATATCTTCTCAAGGTTACCCTTGAGATTGTGAAAATCTTTAACAAAATCCCTAGGTTGTTCTTCCTTTAAAATTTGGAGTGCCTCTTGCACTCCATTTGCGTTAAGCGCCTTGGCATACGAGTCGTTTGCAGTCTGCTGACCTCCTCTAGCAGATCTGCCATCGATTTGAAATTCTCCCCATTCGAGGGTATCTCCATCTTTGTCGATATATGATTTGACATCGGAACTAGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGATCTGGTTGGGGATACCAGATCGAACTGTCGTTCATTCGTGATCTGGACTTTTCCTTCAAGTTGGACAAGGGCATGGAGATGAGGTTTCCCATTCTCGTGAAGCTCTCTGCAAATCTTGATATATCGTTTATTCGAAGTTAGTTGTATTGATTGTAATTGCTCTAATGCTTCATCTTTAGTAAGAGAGCATAATGGGTATGTTAGGAATATATTTTTTGCTTGAAGTCTGAAACGTCTTGGTGGTGGCATATTTGTAATTAAAGGGTGTACTCCAATTGAGCTCCTCTCAACTTGGCGAAACAAATTGGAGTATTGGAGTACAATTTATACTAAAACCTAAGATAGCGCTTGGAGACACGTGGCGGCCATCCGTTTATAATATT
Gene Information
|
NCBI Accession
|
YP_619880.1
|
|
Location
|
197-952 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGCCAAAGCGCGATGCTCCGTGGCGATTGATGGGGGGGACCTCAAAAGTGAGCCGGTCCTCCAACCAGTCTCCCAGGACTGGTACTGGGCCTAAATTTGACAAGGCCCATGCATGGGTTAACAGGCCTATGTACAGGAAGCCCAGGATATATCGGGCTTGGAGAACACCCGACGTTCCTAGAGGCTGTGAAGGCCCATGTAAGGTCCAGTCATTTGAACAACGTCATGATATCTCCCATGTTGGTAAGGTGATGTGCATATCGGACGTCACCCGTGGTAACGGTATCACTCACCGCGTTGGTAAGCGTTTTTGTGTTAAGTCCGTGTATATATTAGGCAAGATCTGGATGGATGACAACATCAAATTGAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTCAGGGATAGGAGACCATATGGTACTCCTATGGATTTTGGCCAAGTGTTCAATATGTACGACAATGAGCCTAGTACTGCTACTGTGAAGAACGATCTTCGTGATTGTTATCAGGTAGTCCACAGATTTTATGCTAAGGTCACTGGTGGTCAGTATGCCAGCAATGAGCAGGCTCTTGTCAGACGATTCTGGAAGGTGAACAACCATGTGGTGTACAACCATCAGGAAGCCGGGAAGTATGAGAACCACACAGAGAATGCTCTGTTATTGTATATGGCGTGTACTCATGCTTTTAATCCTGTATATGCAACTTTGAAAATTCGGATCTATTTTTATGATTCGATAAGTAATTAA |
|
Protein Sequence
|
MPKRDAPWRLMGGTSKVSRSSNQSPRTGTGPKFDKAHAWVNRPMYRKPRIYRAWRTPDVPRGCEGPCKVQSFEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDDNIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATVKNDLRDCYQVVHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHAFNPVYATLKIRIYFYDSISN |
|
NCBI Accession
|
YP_619881.1
|
|
Location
|
949-1347 |
|
Gene Name
|
AC3 |
|
Protein Name
|
replication enhancer protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACCCATCACTGCTCGTCAAGCAGGGAATGGCGTTTTTATTTGGGATGTTCCAAATCCCCTCTATTTCAAGATATACAACGTAGAGGATCTCCTATACACGAACATCAGGATATACCACGTGCAGATCAGGTTCAACCACAACGTGAGGAAAGCTTTGGATCTACACAAGGCATACCTAAATTTCCAAGTCTGGACGACATCCCTGACGGCTTCTGGGACGACTTATTTGAATCGGTTTAGGAGTTTAGTTTTATTGTACTTAGATAGATTAGGTGTTATTTCACTTAATAATGTCATTCGTGCTGTTCGCTTCGCAACAGATAAACCATATGTAAATCATGTATTAGAAAGACATTCAATAAAATTCAAAATTTATTAA |
|
Protein Sequence
|
MDSRTGEPITARQAGNGVFIWDVPNPLYFKIYNVEDLLYTNIRIYHVQIRFNHNVRKALDLHKAYLNFQVWTTSLTASGTTYLNRFRSLVLLYLDRLGVISLNNVIRAVRFATDKPYVNHVLERHSIKFKIY |
|
NCBI Accession
|
YP_619882.1
|
|
Location
|
1088-1483 |
|
Gene Name
|
AC2 |
|
Protein Name
|
transactivator protein TrAP |
|
Coding Region
|
ATGCAGAATTCGTCTTCCTCGACGCCCCCCTCTATCAAACCTAAACACAGGATTGCAAAACGAAAGGGAATACGTCGAAAACGTATAGACTTGGACTGCGGCCGTACAATATACGTGCACATCAACTGCGCCAACAATGGATTCACGCACAGGGGAACCCATCACTGCTCGTCAAGCAGGGAATGGCGTTTTTATTTGGGATGTTCCAAATCCCCTCTATTTCAAGATATACAACGTAGAGGATCTCCTATACACGAACATCAGGATATACCACGTGCAGATCAGGTTCAACCACAACGTGAGGAAAGCTTTGGATCTACACAAGGCATACCTAAATTTCCAAGTCTGGACGACATCCCTGACGGCTTCTGGGACGACTTATTTGAATCGGTTTAG |
|
Protein Sequence
|
MQNSSSSTPPSIKPKHRIAKRKGIRRKRIDLDCGRTIYVHINCANNGFTHRGTHHCSSSREWRFYLGCSKSPLFQDIQRRGSPIHEHQDIPRADQVQPQREESFGSTQGIPKFPSLDDIPDGFWDDLFESV |
|
NCBI Accession
|
YP_619883.1
|
|
Location
|
1440-2480 |
|
Gene Name
|
AC1 |
|
Protein Name
|
replication protein |
|
Coding Region
|
ATGCCACCACCAAGACGTTTCAGACTTCAAGCAAAAAATATATTCCTAACATACCCATTATGCTCTCTTACTAAAGATGAAGCATTAGAGCAATTACAATCAATACAACTAACTTCGAATAAACGATATATCAAGATTTGCAGAGAGCTTCACGAGAATGGGAAACCTCATCTCCATGCCCTTGTCCAACTTGAAGGAAAAGTCCAGATCACGAATGAACGACAGTTCGATCTGGTATCCCCAACCAGATCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCTAGTTCCGATGTCAAATCATATATCGACAAAGATGGAGATACCCTCGAATGGGGAGAATTTCAAATCGATGGCAGATCTGCTAGAGGAGGTCAGCAGACTGCAAACGACTCGTATGCCAAGGCGCTTAACGCAAATGGAGTGCAAGAGGCACTCCAAATTTTAAAGGAAGAACAACCTAGGGATTTTGTTAAAGATTTTCACAATCTCAAGGGTAACCTTGAGAAGATATTTACAAAAGCTCCAGAACCATGGGTTCCTCCATTTTCACTCTCCTCATTTAACAACGTGCCTGAGGAGTTACAGTCATGGGCTGATGATTATTTTGGAAATGGTTGCGCTGCGCGGACATTAAGACCTATCAGTATCATCATCGAAGGTGATTCAAGAACGGGAAAGACGATGTGGGCTCGTTCATTAGGAATTCATAATTATTTGAGTGGTCATCTAGATTTCAATTCTAGAGTTTACTCAAACGATGTTATGTACAACGTCATTGATGACGTACCACCGCACTATCTAAAGATGAAACACTGGAAAGAGCTCATTGGGGCCCAGACAGACTGGCAGACCAACTGTAAATACGGGAAACCCATTCAAATTAAAGGTGGCATTCCATCAATCGTGCTATGCAATCCTGGTGAGGGGGCTAGCTATAAATACTACCTCGACAAACAGGAAAACTCACATCTCAAGGCGTGGACACATCACAATGCAGAATTCGTCTTCCTCGACGCCCCCCTCTATCAAACCTAA |
|
Protein Sequence
|
MPPPRRFRLQAKNIFLTYPLCSLTKDEALEQLQSIQLTSNKRYIKICRELHENGKPHLHALVQLEGKVQITNERQFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQTANDSYAKALNANGVQEALQILKEEQPRDFVKDFHNLKGNLEKIFTKAPEPWVPPFSLSSFNNVPEELQSWADDYFGNGCAARTLRPISIIIEGDSRTGKTMWARSLGIHNYLSGHLDFNSRVYSNDVMYNVIDDVPPHYLKMKHWKELIGAQTDWQTNCKYGKPIQIKGGIPSIVLCNPGEGASYKYYLDKQENSHLKAWTHHNAEFVFLDAPLYQT |
|
NCBI Accession
|
YP_619884.1
|
|
Location
|
2030-2323 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 |
|
Coding Region
|
ATGGGAAACCTCATCTCCATGCCCTTGTCCAACTTGAAGGAAAAGTCCAGATCACGAATGAACGACAGTTCGATCTGGTATCCCCAACCAGATCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCTAGTTCCGATGTCAAATCATATATCGACAAAGATGGAGATACCCTCGAATGGGGAGAATTTCAAATCGATGGCAGATCTGCTAGAGGAGGTCAGCAGACTGCAAACGACTCGTATGCCAAGGCGCTTAACGCAAATGGAGTGCAAGAGGCACTCCAAATTTTAA |
|
Protein Sequence
|
MGNLISMPLSNLKEKSRSRMNDSSIWYPQPDQHISIRTFRELNLVPMSNHISTKMEIPSNGENFKSMADLLEEVSRLQTTRMPRRLTQMECKRHSKF |