Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000839565.1 |
Release date | 2015/2/12 |
Submitter | Hamilton,W.D., Stein,V.E., Coutts,R.H., Buck,K.W., Jeffrey,J.L., Pooma,W., Petty,I.T. |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | NP_077735.1 |
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Location | 1543-2588,1-13 |
Gene Name | ac1 |
Protein Name | Rep |
Coding Region | ATGCCATCGCATCCAAAACGGTTTCAAATAAATGCCAAAAATTATTTTCTTACATATCCTCAGTGCTCCTTGTCCAAAGAAGAATCACTTTCTCAATTACAAGCCCTAAACACTCCGATTAACAAAAAATTCATAAAAATCTGCAGAGAGCTTCATGAAGATGGGCAACCTCACCTCCACGTGCTTATTCAGTTCGAGGGAAAATACTGCTGCCAAAATCAACGATTCTTCGACCTGGTATCCCCAACAAGGTCAGCACATTTCCATCCAAACATTCAGAGAGCTAAATCGTCTTCCGACGTCAAGACGTACATCGACAAAGACGGAGATACTCTTGTATGGGGAGAATTCCAGGTCGACGGTCGAAGTGCTAGAGGAGGTTGCCAAACATCTAACGACGCTGCAGCAGAGGCGTTAAATGCTTCTTCCAAAGAAGAAGCCCTGCAGATAATTAGAGAGAAAATCCCAGAAAAATATTTATTTCAGTTCCACAATCTAAATAGCAATTTAGATAGGATATTTGATAAGACTCCTGAACCATGGCTTCCTCCGTTCCACGTCTCATCATTTACTAACGTGCCAGACGAGATGAGACAATGGGCTGAAAATTATTTTGGAAAGAGTTCCGCTGCGCGGCCGGAGAGACCTATTAGTATTATCATCGAGGGCGATAGTCGGACGGGAAAGACTATGTGGGCTCGTTCACTAGGCCCACATAATTATTTGAGCGGGCATTTGGATCTCAATTCTAGGGTTTACTCAAACAAGGTTGAGTATAACGTCATCGATGATGTCACACCGCAATATCTAAAGTTGAAACATTGGAAAGAACTCATTGGGGCCCAAAGAGATTGGCAGACTAACTGTAAATACGGAAAGCCAGTTCAAATTAAAGGAGGTATCCCGTCAATCGTGCTGTGCAATCCTGGAGAGGGTGCTAGCTATAAAGTTTTCCTCGACAAAGAGGAAAACACTCCACTAAAGAACTGGACTTTCCATAATGCGAAATTCGTCTTCCTCAACTCCCCCCTCTATCAAAGCTCAACACAGAGCAGCTAA |
Protein Sequence | MPSHPKRFQINAKNYFLTYPQCSLSKEESLSQLQALNTPINKKFIKICRELHEDGQPHLHVLIQFEGKYCCQNQRFFDLVSPTRSAHFHPNIQRAKSSSDVKTYIDKDGDTLVWGEFQVDGRSARGGCQTSNDAAAEALNASSKEEALQIIREKIPEKYLFQFHNLNSNLDRIFDKTPEPWLPPFHVSSFTNVPDEMRQWAENYFGKSSAARPERPISIIIEGDSRTGKTMWARSLGPHNYLSGHLDLNSRVYSNKVEYNVIDDVTPQYLKLKHWKELIGAQRDWQTNCKYGKPVQIKGGIPSIVLCNPGEGASYKVFLDKEENTPLKNWTFHNAKFVFLNSPLYQSSTQSS |
NCBI Accession | NP_041238.1 |
---|---|
Location | 327-1070 |
Gene Name | cp |
Protein Name | coat protein |
Coding Region | ATGCCTAAGCGGGATGCCCCATGGCGTTTAATGGCGGGGACCTCAAAGGTTTCCCGCTCTGCTAATTATTCTCCTCGAGGAAGTTTGCCTAAGCGTGATGCTTGGGTTAACAGGCCCATGTACAGGAAGCCCAGGATATATCGATCACTAAGAGGCCCCGATGTTCCTAAAGGATGTGAAGGGCCTTGTAAAGTCCAGTCATACGAGCAGCGTCATGATATTTCCCTAGTTGGGAAGGTCATGTGTATATCTGATGTGACACGTGGTAACGGTATTACCCACCGTGTTGGTAAGCGTTTCTGCGTTAAGTCTGTATATATCTTGGGCAAGATATGGATGGATGAGAACATCAAGTTGAAGAATCACACGAACAGTGTCATGTTCTGGTTGGTTAGGGATCGGAGACCTTATGGCACTCCTATGGATTTCGGACAAGTGTTCAACATGTTCGATAATGAGCCAAGTACTGCAACGGTAAAGAACGACCTACGGGATCGTTTCCAAGTGATCCACAGGTTTCACGCCAAGGTTACTGGTGGTCAATATGCCAGCAACGAGCAGGCTCTGGTTAGGAGATTCTGGAAGGTCAATAACAATGTCGTCTACAACCACCAGGAGGCAGGGAAATATGAGAATCATACTGAGAACGCCCTGTTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCGACGTTGAAAATTCGAATCTATTTTTATGATTCGATAACAAATTAA |
Protein Sequence | MPKRDAPWRLMAGTSKVSRSANYSPRGSLPKRDAWVNRPMYRKPRIYRSLRGPDVPKGCEGPCKVQSYEQRHDISLVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRFQVIHRFHAKVTGGQYASNEQALVRRFWKVNNNVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
NCBI Accession | NP_077736.1 |
---|---|
Location | 1067-1465 |
Gene Name | ac3 |
Protein Name | REn protein |
Coding Region | ATGGATTCACGCACAGGGGAACCTATCACTGTGCCTCAAGCAGAGAATGGCGTCTATATCTGGGAGATAACAAATCCCCTCTATTTCAAGATAATCAGCGTAGAGGATCCCCTCTACACCAACACCAGGATATACCACTTACAAATCAGGTTCAACCACAACCTGAGGAGAGCATTGGATCTCCACAAGGCATTTCTCAACTTCCAAGTATGGACGACATCGACGACAGCTTCTGGGAGAACTTATTTAAATAGATTTAAATACTTAGTGATGTTGTACCTTGAACAGTTAGGCGTTATATGTATTAACAATGTTATTAGAGCTGTTCGTTTCGCAACAGACAGATCATATATAACGCATGTACTCGAAAATCATTCAATAAAATATAAATTTTATTAA |
Protein Sequence | MDSRTGEPITVPQAENGVYIWEITNPLYFKIISVEDPLYTNTRIYHLQIRFNHNLRRALDLHKAFLNFQVWTTSTTASGRTYLNRFKYLVMLYLEQLGVICINNVIRAVRFATDRSYITHVLENHSIKYKFY |
NCBI Accession | NP_077737.1 |
---|---|
Location | 1212-1601 |
Gene Name | ac2 |
Protein Name | TrAP |
Coding Region | ATGCGAAATTCGTCTTCCTCAACTCCCCCCTCTATCAAAGCTCAACACAGAGCAGCTAAACGAAGAGCTATTAGAAGGCGACGAATTGACCTGAACTGTGGCTGTTCCATATACATTCACATCGACTGCAGAAACAATGGATTCACGCACAGGGGAACCTATCACTGTGCCTCAAGCAGAGAATGGCGTCTATATCTGGGAGATAACAAATCCCCTCTATTTCAAGATAATCAGCGTAGAGGATCCCCTCTACACCAACACCAGGATATACCACTTACAAATCAGGTTCAACCACAACCTGAGGAGAGCATTGGATCTCCACAAGGCATTTCTCAACTTCCAAGTATGGACGACATCGACGACAGCTTCTGGGAGAACTTATTTAAATAG |
Protein Sequence | MRNSSSSTPPSIKAQHRAAKRRAIRRRRIDLNCGCSIYIHIDCRNNGFTHRGTYHCASSREWRLYLGDNKSPLFQDNQRRGSPLHQHQDIPLTNQVQPQPEESIGSPQGISQLPSMDDIDDSFWENLFK |
NCBI Accession | NP_077738.1 |
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Location | 2184-2447 |
Gene Name | ac4 |
Protein Name | AC4 protein |
Coding Region | ATGAAGATGGGCAACCTCACCTCCACGTGCTTATTCAGTTCGAGGGAAAATACTGCTGCCAAAATCAACGATTCTTCGACCTGGTATCCCCAACAAGGTCAGCACATTTCCATCCAAACATTCAGAGAGCTAAATCGTCTTCCGACGTCAAGACGTACATCGACAAAGACGGAGATACTCTTGTATGGGGAGAATTCCAGGTCGACGGTCGAAGTGCTAGAGGAGGTTGCCAAACATCTAACGACGCTGCAGCAGAGGCGTTAA |
Protein Sequence | MKMGNLTSTCLFSSRENTAAKINDSSTWYPQQGQHISIQTFRELNRLPTSRRTSTKTEILLYGENSRSTVEVLEEVAKHLTTLQQRR |
NCBI Accession | NP_077114.1 |
---|---|
Location | 461-1231 |
Gene Name | BR-1 |
Protein Name | movement protein/nuclear shuttle |
Coding Region | ATGTACTCAACAAAATATCGACGAGGATTTTTAGCTAATCAAGGACGGGGTTATCCTCGTCATTCAACTGGGAAACGTTCACGTAATGTTAGCCGCATAGATTTTAAACGTCGATCAAGTAAGTATGTTCATGGCAATGATGATAGCAAAATGGCAAACCAGCGTATACATGAGAACCAGTTTGGTCCAGAATTCGTTATGGTCCATAATACAGCCATATCTACGTTTATTACATTCCCCAGTCTTGGCAAGACTGAACCAAGCCGTTCAAGGTCATATATTAAGTTGAAACGTTTACGTTTCAAAGGTACTGTCAAGATTGAACGTGTGCACGTTGATCTTAGCATGGATGGGCCTTCTCCAAAGATTGAAGGCGTATTTTCTCTTGTTGTTGTAGTTGATCGGCAACCACATCTCAGTCCAACTGGATGTCTCCATACATTTGATGAGCTATTTGGCGCCAGGATCCATAGTCATGGAAATTTAGCTGTAAGTTCTGCGTTGAAGGACCGTTTTTACATACGGCATGTGTTTAAACGAGTGATATCCGTTGAGAAGGATTCTACGATGATTGACCTCGAAGGAATGACATCTTTTACTAATAGGCGTTTTAATTGTTGGTCAGCATTTAAGGATTTTGATCGACAAGCATGTAATGGAGTTTATGGCAACATAAGCAAGAACGCCATATTAGTTTACTATTGTTGGATGTCGGATATTGTGTCAAAGGCATCGACATTTGTATCATTTGACCTTGATTATGTCGGATGA |
Protein Sequence | MYSTKYRRGFLANQGRGYPRHSTGKRSRNVSRIDFKRRSSKYVHGNDDSKMANQRIHENQFGPEFVMVHNTAISTFITFPSLGKTEPSRSRSYIKLKRLRFKGTVKIERVHVDLSMDGPSPKIEGVFSLVVVVDRQPHLSPTGCLHTFDELFGARIHSHGNLAVSSALKDRFYIRHVFKRVISVEKDSTMIDLEGMTSFTNRRFNCWSAFKDFDRQACNGVYGNISKNAILVYYCWMSDIVSKASTFVSFDLDYVG |
NCBI Accession | NP_077115.1 |
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Location | 1638-2192 |
Gene Name | BL-1 |
Protein Name | cell-to-cell movement protein |
Coding Region | ATGGATTCTCAGTTAGCTTGTCCCCCAAATGCATTCAATTACATTGAATCAAACCGAGATGAATATCAGTTATCTCATGACTTGACTGAGATAATCTTGCAGTTTCCGTCAACAGCTTCTCAATTAAGCGCCAGACTGAGCCGTAGCTGTATGAAGATAGACCACTGTGTGATTGAGTTCAGGCAACAGGTTCCGATAAACGCAACAGGATCCGTGGTCGTGGAGATTCATGACAAAAGAATGACTGACAATGAATCCTTACAAGCGTCATGGACTTTTCCGGTGAGATGCAATATAGATCTCCACTATTTCTCATCGTCGTTCTTCTCGCTCAAAGACCCAATCCCATGGAAACTATATTACAAAGTTTGCGACTCTAATGTTCACCAGAGGACTCATTTTGCGAAATTCAAAGGGAAGCTGAAATTATCGACAGCTAAACACTCCGTTGATATCCCTTTCCGGGCACCCACTGTCAAAATATTGTCCAAACAATTTACAGATAAAGATGTCGATTCAGCCACGTGGGATATGGGAAATGGGATAGAAAAATGA |
Protein Sequence | MDSQLACPPNAFNYIESNRDEYQLSHDLTEIILQFPSTASQLSARLSRSCMKIDHCVIEFRQQVPINATGSVVVEIHDKRMTDNESLQASWTFPVRCNIDLHYFSSSFFSLKDPIPWKLYYKVCDSNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILSKQFTDKDVDSATWDMGNGIEK |
1 |
Cloned tomato golden mosaic virus back in tomatoes. Wyant PS, et al. Virus Res. 2012 Aug;167(2):397-403. doi: 10.1016/j.virusres.2012.05.021. Epub 2012 Jun 4. PMID: 22677771 |
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2 |
Sunter G, et al. Virology. 1993 Jul;195(1):275-80. doi: 10.1006/viro.1993.1374. PMID: 8317105 |
3 |
Tomato golden mosaic virus A component DNA replicates autonomously in transgenic plants. Rogers SG, et al. Cell. 1986 May 23;45(4):593-600. doi: 10.1016/0092-8674(86)90291-6. PMID: 3708687 |
4 |
Determinants of tomato golden mosaic virus symptom development located on DNA B. von Arnim A, et al. Virology. 1992 Jan;186(1):286-93. doi: 10.1016/0042-6822(92)90083-2. PMID: 1727604 |
5 |
Hung HC, et al. J Gen Virol. 2001 Mar;82(Pt 3):667-672. doi: 10.1099/0022-1317-82-3-667. PMID: 11172109 |
6 |
Pooma W, et al. J Gen Virol. 1996 Aug;77 ( Pt 8):1947-51. doi: 10.1099/0022-1317-77-8-1947. PMID: 8760447 |
7 |
Identification of tomato golden mosaic virus-specific RNAs in infected plants. Sunter G, et al. Virology. 1989 May;170(1):243-50. doi: 10.1016/0042-6822(89)90372-3. PMID: 2541538 |
8 |
Hartitz MD, et al. Virology. 1999 Oct 10;263(1):1-14. doi: 10.1006/viro.1999.9925. PMID: 10544077 |
9 |
Sunter G, et al. Virology. 2001 Jun 20;285(1):59-70. doi: 10.1006/viro.2001.0950. PMID: 11414806 |
10 |
DNA methylation inhibits propagation of tomato golden mosaic virus DNA in transfected protoplasts. Brough CL, et al. Plant Mol Biol. 1992 Feb;18(4):703-12. doi: 10.1007/BF00020012. PMID: 1558945 |