Genus | Begomovirus |
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NCBI Assembly | GCF_000841345.1 |
Isolate | South Africa |
Release date | 2015/2/12 |
Submitter | Pieterson,G., Idris,A.M., Kruger,K., Brown,J.K. |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | NP_817115.1 |
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Location | 139-480 |
Gene Name | v2 |
Protein Name | V2 protein |
Coding Region | ATGTGGGATCCACTGTTAAACGAATTCCCAGACTCCGTCCACGGTTTTCGTTGTATGCTTGCTGTTAAATATCTGCAGTCCGTTGAAGCCACATACGAGCCCAACACATTGGGCCACGATCTTATACGAGATCTGATTCTGGTTATCAGGGCAAAAGATTATGTCGAAGCGTCCCGCCGATATAATCATTTCCACGCCCGCCTCGAAGGTGCGGAGAAGGCTGAACTTCGACAGCCCGTTCACCAGCCGTGCTGTTGTCCCCATTGCCCCAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTATCGAAAGCCCAAGATGTACAGAATGTATAG |
Protein Sequence | MWDPLLNEFPDSVHGFRCMLAVKYLQSVEATYEPNTLGHDLIRDLILVIRAKDYVEASRRYNHFHARLEGAEKAELRQPVHQPCCCPHCPRHKQATIMDVQAHVSKAQDVQNV |
NCBI Accession | NP_817116.1 |
---|---|
Location | 299-1075 |
Gene Name | v1 |
Protein Name | coat protein V1 |
Coding Region | ATGTCGAAGCGTCCCGCCGATATAATCATTTCCACGCCCGCCTCGAAGGTGCGGAGAAGGCTGAACTTCGACAGCCCGTTCACCAGCCGTGCTGTTGTCCCCATTGCCCCAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTATCGAAAGCCCAAGATGTACAGAATGTATAGAAGCCCTGATGTCCCTCGAGGTTGTGAAGGCCCATGTAAGATCCAGTCGTATGAACAGCGCGATGATGTGAAGCACACCGGTATAGTTAGGTGTATCAGTGACATTACAAAGGGTCCTGGTCTGACCCATCGCACGGGTAAAAGGTTCGTGGTGAAGTCTGTCTATATACTCGGTAAGGTATGGATGGATGAGAACATCAAGAAGCAGAACCACACTACCAATGTTATGTTTTTCCTAGTCCGAGATAGAAGGCCCTATGGAACAAGCCCAATGGACTTTGGGCAGGTGTTTAACATGTTTGATAACGAGCCCAGTACAGCCACGGTGAAGAACGATCTTCGTGATCGATTCCAGGTGTTGCGCAAGTTTACAGCCACCGTTGTTGGTGGTCCCTCTGGTCTTAAGGAGCAGGCTCTTGTGAAGCGTTTCTTCAGGTTAAACAGCCATGTAACCTATAACCATCAGGAAGCAGCCAAGTACGAGAACCATACCGAGAATGCGTTGTTGTTGTATATGGCATGTACCCATGCCTCTAATCCTGTGTATGCCACGTTAAAAATACGTGTATATTTTTATGACTCAGTGATGAATTAA |
Protein Sequence | MSKRPADIIISTPASKVRRRLNFDSPFTSRAVVPIAPGTNKRRSWTYRPMYRKPKMYRMYRSPDVPRGCEGPCKIQSYEQRDDVKHTGIVRCISDITKGPGLTHRTGKRFVVKSVYILGKVWMDENIKKQNHTTNVMFFLVRDRRPYGTSPMDFGQVFNMFDNEPSTATVKNDLRDRFQVLRKFTATVVGGPSGLKEQALVKRFFRLNSHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRVYFYDSVMN |
NCBI Accession | NP_817117.1 |
---|---|
Location | 1072-1476 |
Gene Name | c3 |
Protein Name | C3 protein |
Coding Region | ATGGATTTACGCACCGGGGAACTCATCACTGCTCATCAGGCCCAGAATGGCGTCTATATTTGGGAGATAACAAATCCCCTCTATTTCAAGATTATCAACCACGACAGCAGACCGTTCCACACGAACCACGACATCATATCGATCCAGATACGGTTCAACCACAACCTCCGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCCAAGTCTGGACGACCTTACAGCCTCAGACTGGTCGTTTCTTAAGCGTATTTAAATTTCAAGTTTTTAAGTATTTAGATAATTTGGGTGTAATTTCAATTAACAATGTAATTAGAGCAGTTGATCATGTACTTTATAATGTACTTGTAAACACTATCGATGTTGTTGAGACACATGAAATAAAATTTAATATTTATTAA |
Protein Sequence | MDLRTGELITAHQAQNGVYIWEITNPLYFKIINHDSRPFHTNHDIISIQIRFNHNLRKELGIHKCFLNFQVWTTLQPQTGRFLSVFKFQVFKYLDNLGVISINNVIRAVDHVLYNVLVNTIDVVETHEIKFNIY |
NCBI Accession | NP_817118.1 |
---|---|
Location | 1217-1624 |
Gene Name | c2 |
Protein Name | C2 protein |
Coding Region | ATGCGGTCTTCATCACCCTCAACCAGCCACTGTACTCAAGTCCCAATCAAGGTCCAGCATCGAATAGCCAAGAAGAGAGTAGTCAGGCGTAGGCGAGTTGATCTTGATTGCGGGTGTACATATTACCTCCACATCGACTGCAGCAACCATGGATTTACGCACCGGGGAACTCATCACTGCTCATCAGGCCCAGAATGGCGTCTATATTTGGGAGATAACAAATCCCCTCTATTTCAAGATTATCAACCACGACAGCAGACCGTTCCACACGAACCACGACATCATATCGATCCAGATACGGTTCAACCACAACCTCCGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCCAAGTCTGGACGACCTTACAGCCTCAGACTGGTCGTTTCTTAAGCGTATTTAA |
Protein Sequence | MRSSSPSTSHCTQVPIKVQHRIAKKRVVRRRRVDLDCGCTYYLHIDCSNHGFTHRGTHHCSSGPEWRLYLGDNKSPLFQDYQPRQQTVPHEPRHHIDPDTVQPQPPEGTGDSQMFSQLPSLDDLTASDWSFLKRI |
NCBI Accession | NP_817119.1 |
---|---|
Location | 1533-2612 |
Gene Name | c1 |
Protein Name | C1 protein |
Coding Region | ATGGCTCCTCCGAAGCGCTTTCAAATAAATTCCAAAAACTATTTCGTCACATATCCAAAATGCTCTCTCACAAAGGAAGAGTCACTCTCCCAATTATTAAACCTTGAAACACCCACCAATAAAAAATACATCAAAATCTGCAGAGAGCTACACGAAAATGGGGAACCTCATCTCCACGTGCTTATTCAGTTCGAGAGAAAATTCAACTGCAAGAATCACCGATTCTTCGACCTGGTATCCCCAAACAGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGATGGAGACACACTTGAATGGGGAGAATTCCAGGTCGACGGCAGAAGTGCTAGAGGAGGCTGCCAAAATGCTAACGACGCATGCGCCGACGCTTTAAACGCAGGTTCCGCTGAAGCCGCTATGGCTATTATTAGGGAAAAACTCCCTAAAGATTTTATTTTTCAGTATCATAATTTAAAGACTAATTTAGATAGGATTTTCCAGGCTCCCCCAGAGCCTTATATTTCTCCTTTTTCTTCATCTTCTTTTGATCAAGTCCCTGAGGAACTTGAAGAGTGGGTCTCTGAGAATGTGTGTGGTGCCGCTGCGCGGCCTTGGAGACCCAATAGTATTGTAATAGAGGGCGATAGTCGTTCCGGCAAAACTATTTGGGCTAGATCATTAGGGCAACATAATTACTTATGTGGTCATTTAGACTTAAGTCCAAAGGTATATTCTAATGACGCTTGGTATAACGTCATTGATGACGTAGATCCGCATTACCTAAAGCACTGGAAGGAATTCTTTGGGGCCCAAAGGGACTGGCAAAGCAACACGAAGTACGGGAAACCAATTCAAATTAAAGGCGGCATTCCCACTATCTTCCTCTGCAATCCAGGCCCAACATCCTCATATAAAGAATATCTCGATGAGGATAAGAATACATCCCTGAAGGCTTGGACTATAAAGAATGCGGTCTTCATCACCCTCAACCAGCCACTGTACTCAAGTCCCAATCAAGGTCCAGCATCGAATAGCCAAGAAGAGAGTAGTCAGGCGTAG |
Protein Sequence | MAPPKRFQINSKNYFVTYPKCSLTKEESLSQLLNLETPTNKKYIKICRELHENGEPHLHVLIQFERKFNCKNHRFFDLVSPNRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQVDGRSARGGCQNANDACADALNAGSAEAAMAIIREKLPKDFIFQYHNLKTNLDRIFQAPPEPYISPFSSSSFDQVPEELEEWVSENVCGAAARPWRPNSIVIEGDSRSGKTIWARSLGQHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHWKEFFGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNTSLKAWTIKNAVFITLNQPLYSSPNQGPASNSQEESSQA |
1 |
Mulaudzi PE, et al. Front Plant Sci. 2023 Jun 6;14:1135442. doi: 10.3389/fpls.2023.1135442. eCollection 2023. PMID: 37346143 |
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2 |
Bokhale M, et al. Data Brief. 2020 May 21;31:105750. doi: 10.1016/j.dib.2020.105750. eCollection 2020 Aug. PMID: 32509939 |
3 |
Pietersen G, et al. Plant Dis. 2000 Jul;84(7):810. doi: 10.1094/PDIS.2000.84.7.810B. PMID: 30832127 |
4 |
Rossouw LT, et al. Metabolites. 2019 Mar 28;9(4):60. doi: 10.3390/metabo9040060. PMID: 30925828 |
5 |
Bokhale M, et al. PLoS One. 2023 Jul 27;18(7):e0284456. doi: 10.1371/journal.pone.0284456. eCollection 2023. PMID: 37498814 |
6 |
Zwolinski AM, et al. PLoS One. 2023 May 23;18(5):e0286149. doi: 10.1371/journal.pone.0286149. eCollection 2023. PMID: 37220127 |
7 |
Tomato yellow leaf curl virus Resistant Tomatoes Show Resistance to Tomato curly stunt virus. Pietersen G, et al. Plant Dis. 2002 May;86(5):528-534. doi: 10.1094/PDIS.2002.86.5.528. PMID: 30818677 |
8 |
Zhou YC, et al. Arch Virol. 2008;153(4):693-706. doi: 10.1007/s00705-008-0042-9. Epub 2008 Feb 16. PMID: 18278427 |
9 |
Chlorotic curly stunt: a severe begomovirus disease of bottle gourd in northern India. Sohrab SS, et al. Indian J Virol. 2010 Jun;21(1):56-63. doi: 10.1007/s13337-010-0002-3. Epub 2010 Sep 3. PMID: 23637479 |
10 |
A century of plant virus management in the Salinas valley of California, 'East of Eden'. Wisler GC, et al. Virus Res. 2000 Nov;71(1-2):161-9. doi: 10.1016/s0168-1702(00)00196-9. PMID: 11137170 |