Tomato curly stunt virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000841345.1 |
| Isolate |
South Africa |
| Release date |
2015/2/12 |
| Submitter |
Pieterson,G., Idris,A.M., Kruger,K., Brown,J.K. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGTGCCCCCAAAAAAAAGTGGTCCCCACGCACTATTTTATGTCGACCAATCAGAATGTCGCCTTATCGCTTAGTTATCTGCTATTTTGTCTTTATATGGGAAACTTCGCGGAAGTTACCATTGTCAAGATGTGGGATCCACTGTTAAACGAATTCCCAGACTCCGTCCACGGTTTTCGTTGTATGCTTGCTGTTAAATATCTGCAGTCCGTTGAAGCCACATACGAGCCCAACACATTGGGCCACGATCTTATACGAGATCTGATTCTGGTTATCAGGGCAAAAGATTATGTCGAAGCGTCCCGCCGATATAATCATTTCCACGCCCGCCTCGAAGGTGCGGAGAAGGCTGAACTTCGACAGCCCGTTCACCAGCCGTGCTGTTGTCCCCATTGCCCCAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTATCGAAAGCCCAAGATGTACAGAATGTATAGAAGCCCTGATGTCCCTCGAGGTTGTGAAGGCCCATGTAAGATCCAGTCGTATGAACAGCGCGATGATGTGAAGCACACCGGTATAGTTAGGTGTATCAGTGACATTACAAAGGGTCCTGGTCTGACCCATCGCACGGGTAAAAGGTTCGTGGTGAAGTCTGTCTATATACTCGGTAAGGTATGGATGGATGAGAACATCAAGAAGCAGAACCACACTACCAATGTTATGTTTTTCCTAGTCCGAGATAGAAGGCCCTATGGAACAAGCCCAATGGACTTTGGGCAGGTGTTTAACATGTTTGATAACGAGCCCAGTACAGCCACGGTGAAGAACGATCTTCGTGATCGATTCCAGGTGTTGCGCAAGTTTACAGCCACCGTTGTTGGTGGTCCCTCTGGTCTTAAGGAGCAGGCTCTTGTGAAGCGTTTCTTCAGGTTAAACAGCCATGTAACCTATAACCATCAGGAAGCAGCCAAGTACGAGAACCATACCGAGAATGCGTTGTTGTTGTATATGGCATGTACCCATGCCTCTAATCCTGTGTATGCCACGTTAAAAATACGTGTATATTTTTATGACTCAGTGATGAATTAATAAATATTAAATTTTATTTCATGTGTCTCAACAACATCGATAGTGTTTACAAGTACATTATAAAGTACATGATCAACTGCTCTAATTACATTGTTAATTGAAATTACACCCAAATTATCTAAATACTTAAAAACTTGAAATTTAAATACGCTTAAGAAACGACCAGTCTGAGGCTGTAAGGTCGTCCAGACTTGGAAGTTGAGAAAACATTTGTGAATCCCCAGTTCCTTCCGGAGGTTGTGGTTGAACCGTATCTGGATCGATATGATGTCGTGGTTCGTGTGGAACGGTCTGCTGTCGTGGTTGATAATCTTGAAATAGAGGGGATTTGTTATCTCCCAAATATAGACGCCATTCTGGGCCTGATGAGCAGTGATGAGTTCCCCGGTGCGTAAATCCATGGTTGCTGCAGTCGATGTGGAGGTAATATGTACACCCGCAATCAAGATCAACTCGCCTACGCCTGACTACTCTCTTCTTGGCTATTCGATGCTGGACCTTGATTGGGACTTGAGTACAGTGGCTGGTTGAGGGTGATGAAGACCGCATTCTTTATAGTCCAAGCCTTCAGGGATGTATTCTTATCCTCATCGAGATATTCTTTATATGAGGATGTTGGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAATTTGAATTGGTTTCCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCAAAGAATTCCTTCCAGTGCTTTAGGTAATGCGGATCTACGTCATCAATGACGTTATACCAAGCGTCATTAGAATATACCTTTGGACTTAAGTCTAAATGACCACATAAGTAATTATGTTGCCCTAATGATCTAGCCCAAATAGTTTTGCCGGAACGACTATCGCCCTCTATTACAATACTATTGGGTCTCCAAGGCCGCGCAGCGGCACCACACACATTCTCAGAGACCCACTCTTCAAGTTCCTCAGGGACTTGATCAAAAGAAGATGAAGAAAAAGGAGAAATATAAGGCTCTGGGGGAGCCTGGAAAATCCTATCTAAATTAGTCTTTAAATTATGATACTGAAAAATAAAATCTTTAGGGAGTTTTTCCCTAATAATAGCCATAGCGGCTTCAGCGGAACCTGCGTTTAAAGCGTCGGCGCATGCGTCGTTAGCATTTTGGCAGCCTCCTCTAGCACTTCTGCCGTCGACCTGGAATTCTCCCCATTCAAGTGTGTCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGTTTGGGGATACCAGGTCGAAGAATCGGTGATTCTTGCAGTTGAATTTTCTCTCGAACTGAATAAGCACGTGGAGATGAGGTTCCCCATTTTCGTGTAGCTCTCTGCAGATTTTGATGTATTTTTTATTGGTGGGTGTTTCAAGGTTTAATAATTGGGAGAGTGACTCTTCCTTTGTGAGAGAGCATTTTGGATATGTGACGAAATAGTTTTTGGAATTTATTTGAAAGCGCTTCGGAGGAGCCATTTGGTCAATGGGTACCGATTGACTCTCAAATTGCATTCTCCTGGTATATCGGTACCCAATATATAGTGGGTACTGAATGGCACAATTGTAATTTGTGTGAAATTAATTGGTATTTCAAAATTCAAACTCCCAAAGCGGCCATCCGATTAATATT
Gene Information
|
NCBI Accession
|
NP_817115.1
|
|
Location
|
139-480 |
|
Gene Name
|
v2 |
|
Protein Name
|
V2 protein |
|
Coding Region
|
ATGTGGGATCCACTGTTAAACGAATTCCCAGACTCCGTCCACGGTTTTCGTTGTATGCTTGCTGTTAAATATCTGCAGTCCGTTGAAGCCACATACGAGCCCAACACATTGGGCCACGATCTTATACGAGATCTGATTCTGGTTATCAGGGCAAAAGATTATGTCGAAGCGTCCCGCCGATATAATCATTTCCACGCCCGCCTCGAAGGTGCGGAGAAGGCTGAACTTCGACAGCCCGTTCACCAGCCGTGCTGTTGTCCCCATTGCCCCAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTATCGAAAGCCCAAGATGTACAGAATGTATAG |
|
Protein Sequence
|
MWDPLLNEFPDSVHGFRCMLAVKYLQSVEATYEPNTLGHDLIRDLILVIRAKDYVEASRRYNHFHARLEGAEKAELRQPVHQPCCCPHCPRHKQATIMDVQAHVSKAQDVQNV |
|
NCBI Accession
|
NP_817116.1
|
|
Location
|
299-1075 |
|
Gene Name
|
v1 |
|
Protein Name
|
coat protein V1 |
|
Coding Region
|
ATGTCGAAGCGTCCCGCCGATATAATCATTTCCACGCCCGCCTCGAAGGTGCGGAGAAGGCTGAACTTCGACAGCCCGTTCACCAGCCGTGCTGTTGTCCCCATTGCCCCAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTATCGAAAGCCCAAGATGTACAGAATGTATAGAAGCCCTGATGTCCCTCGAGGTTGTGAAGGCCCATGTAAGATCCAGTCGTATGAACAGCGCGATGATGTGAAGCACACCGGTATAGTTAGGTGTATCAGTGACATTACAAAGGGTCCTGGTCTGACCCATCGCACGGGTAAAAGGTTCGTGGTGAAGTCTGTCTATATACTCGGTAAGGTATGGATGGATGAGAACATCAAGAAGCAGAACCACACTACCAATGTTATGTTTTTCCTAGTCCGAGATAGAAGGCCCTATGGAACAAGCCCAATGGACTTTGGGCAGGTGTTTAACATGTTTGATAACGAGCCCAGTACAGCCACGGTGAAGAACGATCTTCGTGATCGATTCCAGGTGTTGCGCAAGTTTACAGCCACCGTTGTTGGTGGTCCCTCTGGTCTTAAGGAGCAGGCTCTTGTGAAGCGTTTCTTCAGGTTAAACAGCCATGTAACCTATAACCATCAGGAAGCAGCCAAGTACGAGAACCATACCGAGAATGCGTTGTTGTTGTATATGGCATGTACCCATGCCTCTAATCCTGTGTATGCCACGTTAAAAATACGTGTATATTTTTATGACTCAGTGATGAATTAA |
|
Protein Sequence
|
MSKRPADIIISTPASKVRRRLNFDSPFTSRAVVPIAPGTNKRRSWTYRPMYRKPKMYRMYRSPDVPRGCEGPCKIQSYEQRDDVKHTGIVRCISDITKGPGLTHRTGKRFVVKSVYILGKVWMDENIKKQNHTTNVMFFLVRDRRPYGTSPMDFGQVFNMFDNEPSTATVKNDLRDRFQVLRKFTATVVGGPSGLKEQALVKRFFRLNSHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRVYFYDSVMN |
|
NCBI Accession
|
NP_817117.1
|
|
Location
|
1072-1476 |
|
Gene Name
|
c3 |
|
Protein Name
|
C3 protein |
|
Coding Region
|
ATGGATTTACGCACCGGGGAACTCATCACTGCTCATCAGGCCCAGAATGGCGTCTATATTTGGGAGATAACAAATCCCCTCTATTTCAAGATTATCAACCACGACAGCAGACCGTTCCACACGAACCACGACATCATATCGATCCAGATACGGTTCAACCACAACCTCCGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCCAAGTCTGGACGACCTTACAGCCTCAGACTGGTCGTTTCTTAAGCGTATTTAAATTTCAAGTTTTTAAGTATTTAGATAATTTGGGTGTAATTTCAATTAACAATGTAATTAGAGCAGTTGATCATGTACTTTATAATGTACTTGTAAACACTATCGATGTTGTTGAGACACATGAAATAAAATTTAATATTTATTAA |
|
Protein Sequence
|
MDLRTGELITAHQAQNGVYIWEITNPLYFKIINHDSRPFHTNHDIISIQIRFNHNLRKELGIHKCFLNFQVWTTLQPQTGRFLSVFKFQVFKYLDNLGVISINNVIRAVDHVLYNVLVNTIDVVETHEIKFNIY |
|
NCBI Accession
|
NP_817118.1
|
|
Location
|
1217-1624 |
|
Gene Name
|
c2 |
|
Protein Name
|
C2 protein |
|
Coding Region
|
ATGCGGTCTTCATCACCCTCAACCAGCCACTGTACTCAAGTCCCAATCAAGGTCCAGCATCGAATAGCCAAGAAGAGAGTAGTCAGGCGTAGGCGAGTTGATCTTGATTGCGGGTGTACATATTACCTCCACATCGACTGCAGCAACCATGGATTTACGCACCGGGGAACTCATCACTGCTCATCAGGCCCAGAATGGCGTCTATATTTGGGAGATAACAAATCCCCTCTATTTCAAGATTATCAACCACGACAGCAGACCGTTCCACACGAACCACGACATCATATCGATCCAGATACGGTTCAACCACAACCTCCGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCCAAGTCTGGACGACCTTACAGCCTCAGACTGGTCGTTTCTTAAGCGTATTTAA |
|
Protein Sequence
|
MRSSSPSTSHCTQVPIKVQHRIAKKRVVRRRRVDLDCGCTYYLHIDCSNHGFTHRGTHHCSSGPEWRLYLGDNKSPLFQDYQPRQQTVPHEPRHHIDPDTVQPQPPEGTGDSQMFSQLPSLDDLTASDWSFLKRI |
|
NCBI Accession
|
NP_817119.1
|
|
Location
|
1533-2612 |
|
Gene Name
|
c1 |
|
Protein Name
|
C1 protein |
|
Coding Region
|
ATGGCTCCTCCGAAGCGCTTTCAAATAAATTCCAAAAACTATTTCGTCACATATCCAAAATGCTCTCTCACAAAGGAAGAGTCACTCTCCCAATTATTAAACCTTGAAACACCCACCAATAAAAAATACATCAAAATCTGCAGAGAGCTACACGAAAATGGGGAACCTCATCTCCACGTGCTTATTCAGTTCGAGAGAAAATTCAACTGCAAGAATCACCGATTCTTCGACCTGGTATCCCCAAACAGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGATGGAGACACACTTGAATGGGGAGAATTCCAGGTCGACGGCAGAAGTGCTAGAGGAGGCTGCCAAAATGCTAACGACGCATGCGCCGACGCTTTAAACGCAGGTTCCGCTGAAGCCGCTATGGCTATTATTAGGGAAAAACTCCCTAAAGATTTTATTTTTCAGTATCATAATTTAAAGACTAATTTAGATAGGATTTTCCAGGCTCCCCCAGAGCCTTATATTTCTCCTTTTTCTTCATCTTCTTTTGATCAAGTCCCTGAGGAACTTGAAGAGTGGGTCTCTGAGAATGTGTGTGGTGCCGCTGCGCGGCCTTGGAGACCCAATAGTATTGTAATAGAGGGCGATAGTCGTTCCGGCAAAACTATTTGGGCTAGATCATTAGGGCAACATAATTACTTATGTGGTCATTTAGACTTAAGTCCAAAGGTATATTCTAATGACGCTTGGTATAACGTCATTGATGACGTAGATCCGCATTACCTAAAGCACTGGAAGGAATTCTTTGGGGCCCAAAGGGACTGGCAAAGCAACACGAAGTACGGGAAACCAATTCAAATTAAAGGCGGCATTCCCACTATCTTCCTCTGCAATCCAGGCCCAACATCCTCATATAAAGAATATCTCGATGAGGATAAGAATACATCCCTGAAGGCTTGGACTATAAAGAATGCGGTCTTCATCACCCTCAACCAGCCACTGTACTCAAGTCCCAATCAAGGTCCAGCATCGAATAGCCAAGAAGAGAGTAGTCAGGCGTAG |
|
Protein Sequence
|
MAPPKRFQINSKNYFVTYPKCSLTKEESLSQLLNLETPTNKKYIKICRELHENGEPHLHVLIQFERKFNCKNHRFFDLVSPNRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQVDGRSARGGCQNANDACADALNAGSAEAAMAIIREKLPKDFIFQYHNLKTNLDRIFQAPPEPYISPFSSSSFDQVPEELEEWVSENVCGAAARPWRPNSIVIEGDSRSGKTIWARSLGQHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHWKEFFGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNTSLKAWTIKNAVFITLNQPLYSSPNQGPASNSQEESSQA |