Tomato curly stunt virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000841345.1
Isolate South Africa
Release date 2015/2/12
Submitter Pieterson,G., Idris,A.M., Kruger,K., Brown,J.K.
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_004675
ACCGGATGGCCGTGCCCCCAAAAAAAAGTGGTCCCCACGCACTATTTTATGTCGACCAATCAGAATGTCGCCTTATCGCTTAGTTATCTGCTATTTTGTCTTTATATGGGAAACTTCGCGGAAGTTACCATTGTCAAGATGTGGGATCCACTGTTAAACGAATTCCCAGACTCCGTCCACGGTTTTCGTTGTATGCTTGCTGTTAAATATCTGCAGTCCGTTGAAGCCACATACGAGCCCAACACATTGGGCCACGATCTTATACGAGATCTGATTCTGGTTATCAGGGCAAAAGATTATGTCGAAGCGTCCCGCCGATATAATCATTTCCACGCCCGCCTCGAAGGTGCGGAGAAGGCTGAACTTCGACAGCCCGTTCACCAGCCGTGCTGTTGTCCCCATTGCCCCAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTATCGAAAGCCCAAGATGTACAGAATGTATAGAAGCCCTGATGTCCCTCGAGGTTGTGAAGGCCCATGTAAGATCCAGTCGTATGAACAGCGCGATGATGTGAAGCACACCGGTATAGTTAGGTGTATCAGTGACATTACAAAGGGTCCTGGTCTGACCCATCGCACGGGTAAAAGGTTCGTGGTGAAGTCTGTCTATATACTCGGTAAGGTATGGATGGATGAGAACATCAAGAAGCAGAACCACACTACCAATGTTATGTTTTTCCTAGTCCGAGATAGAAGGCCCTATGGAACAAGCCCAATGGACTTTGGGCAGGTGTTTAACATGTTTGATAACGAGCCCAGTACAGCCACGGTGAAGAACGATCTTCGTGATCGATTCCAGGTGTTGCGCAAGTTTACAGCCACCGTTGTTGGTGGTCCCTCTGGTCTTAAGGAGCAGGCTCTTGTGAAGCGTTTCTTCAGGTTAAACAGCCATGTAACCTATAACCATCAGGAAGCAGCCAAGTACGAGAACCATACCGAGAATGCGTTGTTGTTGTATATGGCATGTACCCATGCCTCTAATCCTGTGTATGCCACGTTAAAAATACGTGTATATTTTTATGACTCAGTGATGAATTAATAAATATTAAATTTTATTTCATGTGTCTCAACAACATCGATAGTGTTTACAAGTACATTATAAAGTACATGATCAACTGCTCTAATTACATTGTTAATTGAAATTACACCCAAATTATCTAAATACTTAAAAACTTGAAATTTAAATACGCTTAAGAAACGACCAGTCTGAGGCTGTAAGGTCGTCCAGACTTGGAAGTTGAGAAAACATTTGTGAATCCCCAGTTCCTTCCGGAGGTTGTGGTTGAACCGTATCTGGATCGATATGATGTCGTGGTTCGTGTGGAACGGTCTGCTGTCGTGGTTGATAATCTTGAAATAGAGGGGATTTGTTATCTCCCAAATATAGACGCCATTCTGGGCCTGATGAGCAGTGATGAGTTCCCCGGTGCGTAAATCCATGGTTGCTGCAGTCGATGTGGAGGTAATATGTACACCCGCAATCAAGATCAACTCGCCTACGCCTGACTACTCTCTTCTTGGCTATTCGATGCTGGACCTTGATTGGGACTTGAGTACAGTGGCTGGTTGAGGGTGATGAAGACCGCATTCTTTATAGTCCAAGCCTTCAGGGATGTATTCTTATCCTCATCGAGATATTCTTTATATGAGGATGTTGGGCCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAATTTGAATTGGTTTCCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCAAAGAATTCCTTCCAGTGCTTTAGGTAATGCGGATCTACGTCATCAATGACGTTATACCAAGCGTCATTAGAATATACCTTTGGACTTAAGTCTAAATGACCACATAAGTAATTATGTTGCCCTAATGATCTAGCCCAAATAGTTTTGCCGGAACGACTATCGCCCTCTATTACAATACTATTGGGTCTCCAAGGCCGCGCAGCGGCACCACACACATTCTCAGAGACCCACTCTTCAAGTTCCTCAGGGACTTGATCAAAAGAAGATGAAGAAAAAGGAGAAATATAAGGCTCTGGGGGAGCCTGGAAAATCCTATCTAAATTAGTCTTTAAATTATGATACTGAAAAATAAAATCTTTAGGGAGTTTTTCCCTAATAATAGCCATAGCGGCTTCAGCGGAACCTGCGTTTAAAGCGTCGGCGCATGCGTCGTTAGCATTTTGGCAGCCTCCTCTAGCACTTCTGCCGTCGACCTGGAATTCTCCCCATTCAAGTGTGTCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGTTTGGGGATACCAGGTCGAAGAATCGGTGATTCTTGCAGTTGAATTTTCTCTCGAACTGAATAAGCACGTGGAGATGAGGTTCCCCATTTTCGTGTAGCTCTCTGCAGATTTTGATGTATTTTTTATTGGTGGGTGTTTCAAGGTTTAATAATTGGGAGAGTGACTCTTCCTTTGTGAGAGAGCATTTTGGATATGTGACGAAATAGTTTTTGGAATTTATTTGAAAGCGCTTCGGAGGAGCCATTTGGTCAATGGGTACCGATTGACTCTCAAATTGCATTCTCCTGGTATATCGGTACCCAATATATAGTGGGTACTGAATGGCACAATTGTAATTTGTGTGAAATTAATTGGTATTTCAAAATTCAAACTCCCAAAGCGGCCATCCGATTAATATT

Gene Information

NCBI Accession NP_817115.1
Location 139-480
Gene Name v2
Protein Name V2 protein
Coding Region ATGTGGGATCCACTGTTAAACGAATTCCCAGACTCCGTCCACGGTTTTCGTTGTATGCTTGCTGTTAAATATCTGCAGTCCGTTGAAGCCACATACGAGCCCAACACATTGGGCCACGATCTTATACGAGATCTGATTCTGGTTATCAGGGCAAAAGATTATGTCGAAGCGTCCCGCCGATATAATCATTTCCACGCCCGCCTCGAAGGTGCGGAGAAGGCTGAACTTCGACAGCCCGTTCACCAGCCGTGCTGTTGTCCCCATTGCCCCAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTATCGAAAGCCCAAGATGTACAGAATGTATAG
Protein Sequence MWDPLLNEFPDSVHGFRCMLAVKYLQSVEATYEPNTLGHDLIRDLILVIRAKDYVEASRRYNHFHARLEGAEKAELRQPVHQPCCCPHCPRHKQATIMDVQAHVSKAQDVQNV

NCBI Accession NP_817116.1
Location 299-1075
Gene Name v1
Protein Name coat protein V1
Coding Region ATGTCGAAGCGTCCCGCCGATATAATCATTTCCACGCCCGCCTCGAAGGTGCGGAGAAGGCTGAACTTCGACAGCCCGTTCACCAGCCGTGCTGTTGTCCCCATTGCCCCAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTATCGAAAGCCCAAGATGTACAGAATGTATAGAAGCCCTGATGTCCCTCGAGGTTGTGAAGGCCCATGTAAGATCCAGTCGTATGAACAGCGCGATGATGTGAAGCACACCGGTATAGTTAGGTGTATCAGTGACATTACAAAGGGTCCTGGTCTGACCCATCGCACGGGTAAAAGGTTCGTGGTGAAGTCTGTCTATATACTCGGTAAGGTATGGATGGATGAGAACATCAAGAAGCAGAACCACACTACCAATGTTATGTTTTTCCTAGTCCGAGATAGAAGGCCCTATGGAACAAGCCCAATGGACTTTGGGCAGGTGTTTAACATGTTTGATAACGAGCCCAGTACAGCCACGGTGAAGAACGATCTTCGTGATCGATTCCAGGTGTTGCGCAAGTTTACAGCCACCGTTGTTGGTGGTCCCTCTGGTCTTAAGGAGCAGGCTCTTGTGAAGCGTTTCTTCAGGTTAAACAGCCATGTAACCTATAACCATCAGGAAGCAGCCAAGTACGAGAACCATACCGAGAATGCGTTGTTGTTGTATATGGCATGTACCCATGCCTCTAATCCTGTGTATGCCACGTTAAAAATACGTGTATATTTTTATGACTCAGTGATGAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPFTSRAVVPIAPGTNKRRSWTYRPMYRKPKMYRMYRSPDVPRGCEGPCKIQSYEQRDDVKHTGIVRCISDITKGPGLTHRTGKRFVVKSVYILGKVWMDENIKKQNHTTNVMFFLVRDRRPYGTSPMDFGQVFNMFDNEPSTATVKNDLRDRFQVLRKFTATVVGGPSGLKEQALVKRFFRLNSHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRVYFYDSVMN

NCBI Accession NP_817117.1
Location 1072-1476
Gene Name c3
Protein Name C3 protein
Coding Region ATGGATTTACGCACCGGGGAACTCATCACTGCTCATCAGGCCCAGAATGGCGTCTATATTTGGGAGATAACAAATCCCCTCTATTTCAAGATTATCAACCACGACAGCAGACCGTTCCACACGAACCACGACATCATATCGATCCAGATACGGTTCAACCACAACCTCCGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCCAAGTCTGGACGACCTTACAGCCTCAGACTGGTCGTTTCTTAAGCGTATTTAAATTTCAAGTTTTTAAGTATTTAGATAATTTGGGTGTAATTTCAATTAACAATGTAATTAGAGCAGTTGATCATGTACTTTATAATGTACTTGTAAACACTATCGATGTTGTTGAGACACATGAAATAAAATTTAATATTTATTAA
Protein Sequence MDLRTGELITAHQAQNGVYIWEITNPLYFKIINHDSRPFHTNHDIISIQIRFNHNLRKELGIHKCFLNFQVWTTLQPQTGRFLSVFKFQVFKYLDNLGVISINNVIRAVDHVLYNVLVNTIDVVETHEIKFNIY

NCBI Accession NP_817118.1
Location 1217-1624
Gene Name c2
Protein Name C2 protein
Coding Region ATGCGGTCTTCATCACCCTCAACCAGCCACTGTACTCAAGTCCCAATCAAGGTCCAGCATCGAATAGCCAAGAAGAGAGTAGTCAGGCGTAGGCGAGTTGATCTTGATTGCGGGTGTACATATTACCTCCACATCGACTGCAGCAACCATGGATTTACGCACCGGGGAACTCATCACTGCTCATCAGGCCCAGAATGGCGTCTATATTTGGGAGATAACAAATCCCCTCTATTTCAAGATTATCAACCACGACAGCAGACCGTTCCACACGAACCACGACATCATATCGATCCAGATACGGTTCAACCACAACCTCCGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCCAAGTCTGGACGACCTTACAGCCTCAGACTGGTCGTTTCTTAAGCGTATTTAA
Protein Sequence MRSSSPSTSHCTQVPIKVQHRIAKKRVVRRRRVDLDCGCTYYLHIDCSNHGFTHRGTHHCSSGPEWRLYLGDNKSPLFQDYQPRQQTVPHEPRHHIDPDTVQPQPPEGTGDSQMFSQLPSLDDLTASDWSFLKRI

NCBI Accession NP_817119.1
Location 1533-2612
Gene Name c1
Protein Name C1 protein
Coding Region ATGGCTCCTCCGAAGCGCTTTCAAATAAATTCCAAAAACTATTTCGTCACATATCCAAAATGCTCTCTCACAAAGGAAGAGTCACTCTCCCAATTATTAAACCTTGAAACACCCACCAATAAAAAATACATCAAAATCTGCAGAGAGCTACACGAAAATGGGGAACCTCATCTCCACGTGCTTATTCAGTTCGAGAGAAAATTCAACTGCAAGAATCACCGATTCTTCGACCTGGTATCCCCAAACAGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGATGGAGACACACTTGAATGGGGAGAATTCCAGGTCGACGGCAGAAGTGCTAGAGGAGGCTGCCAAAATGCTAACGACGCATGCGCCGACGCTTTAAACGCAGGTTCCGCTGAAGCCGCTATGGCTATTATTAGGGAAAAACTCCCTAAAGATTTTATTTTTCAGTATCATAATTTAAAGACTAATTTAGATAGGATTTTCCAGGCTCCCCCAGAGCCTTATATTTCTCCTTTTTCTTCATCTTCTTTTGATCAAGTCCCTGAGGAACTTGAAGAGTGGGTCTCTGAGAATGTGTGTGGTGCCGCTGCGCGGCCTTGGAGACCCAATAGTATTGTAATAGAGGGCGATAGTCGTTCCGGCAAAACTATTTGGGCTAGATCATTAGGGCAACATAATTACTTATGTGGTCATTTAGACTTAAGTCCAAAGGTATATTCTAATGACGCTTGGTATAACGTCATTGATGACGTAGATCCGCATTACCTAAAGCACTGGAAGGAATTCTTTGGGGCCCAAAGGGACTGGCAAAGCAACACGAAGTACGGGAAACCAATTCAAATTAAAGGCGGCATTCCCACTATCTTCCTCTGCAATCCAGGCCCAACATCCTCATATAAAGAATATCTCGATGAGGATAAGAATACATCCCTGAAGGCTTGGACTATAAAGAATGCGGTCTTCATCACCCTCAACCAGCCACTGTACTCAAGTCCCAATCAAGGTCCAGCATCGAATAGCCAAGAAGAGAGTAGTCAGGCGTAG
Protein Sequence MAPPKRFQINSKNYFVTYPKCSLTKEESLSQLLNLETPTNKKYIKICRELHENGEPHLHVLIQFERKFNCKNHRFFDLVSPNRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQVDGRSARGGCQNANDACADALNAGSAEAAMAIIREKLPKDFIFQYHNLKTNLDRIFQAPPEPYISPFSSSSFDQVPEELEEWVSENVCGAAARPWRPNSIVIEGDSRSGKTIWARSLGQHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHWKEFFGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNTSLKAWTIKNAVFITLNQPLYSSPNQGPASNSQEESSQA

References More References in PubMed

1

The identification of the methylation patterns of tomato curly stunt virus in resistant and susceptible tomato lines.

Mulaudzi PE, et al.  Front Plant Sci. 2023 Jun 6;14:1135442. doi: 10.3389/fpls.2023.1135442. eCollection 2023.

PMID: 37346143
2

Real-time PCR data for reference candidate gene selection in tomato infected with Tomato curly stunt virus.

Bokhale M, et al.  Data Brief. 2020 May 21;31:105750. doi: 10.1016/j.dib.2020.105750. eCollection 2020 Aug.

PMID: 32509939
3

Tomato curly stunt virus, a New Begomovirus of Tomato Within the Tomato yellow leaf curl virus-IS Cluster in South Africa.

Pietersen G, et al.  Plant Dis. 2000 Jul;84(7):810. doi: 10.1094/PDIS.2000.84.7.810B.

PMID: 30832127
4

Deciphering the Resistance Mechanism of Tomato Plants Against Whitefly-Mediated Tomato Curly Stunt Virus Infection through Ultra-High-Performance Liquid Chromatography Coupled to Mass Spectrometry (UHPLC-MS)-Based Metabolomics Approaches.

Rossouw LT, et al.  Metabolites. 2019 Mar 28;9(4):60. doi: 10.3390/metabo9040060.

PMID: 30925828
5

The selection and validation of reference genes for quantitative real-time PCR studies in near-isogenic susceptible and resistant tomato lines, infected with the geminivirus tomato curly stunt virus.

Bokhale M, et al.  PLoS One. 2023 Jul 27;18(7):e0284456. doi: 10.1371/journal.pone.0284456. eCollection 2023.

PMID: 37498814
6

Differences in the 3' intergenic region and the V2 protein of two sequence variants of tomato curly stunt virus play an important role in disease pathology in Nicotiana benthamiana.

Zwolinski AM, et al.  PLoS One. 2023 May 23;18(5):e0286149. doi: 10.1371/journal.pone.0286149. eCollection 2023.

PMID: 37220127
7

Tomato yellow leaf curl virus Resistant Tomatoes Show Resistance to Tomato curly stunt virus.

Pietersen G, et al.  Plant Dis. 2002 May;86(5):528-534. doi: 10.1094/PDIS.2002.86.5.528.

PMID: 30818677
8

Evidence of local evolution of tomato-infecting begomovirus species in West Africa: characterization of tomato leaf curl Mali virus and tomato yellow leaf crumple virus from Mali.

Zhou YC, et al.  Arch Virol. 2008;153(4):693-706. doi: 10.1007/s00705-008-0042-9. Epub 2008 Feb 16.

PMID: 18278427
9

Chlorotic curly stunt: a severe begomovirus disease of bottle gourd in northern India.

Sohrab SS, et al.  Indian J Virol. 2010 Jun;21(1):56-63. doi: 10.1007/s13337-010-0002-3. Epub 2010 Sep 3.

PMID: 23637479
10

A century of plant virus management in the Salinas valley of California, 'East of Eden'.

Wisler GC, et al.  Virus Res. 2000 Nov;71(1-2):161-9. doi: 10.1016/s0168-1702(00)00196-9.

PMID: 11137170