Tomato chlorotic mottle Guyane virus
Basic Information
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTTCCCCCTCTGACGTGGCGCGCATCTGACCGTTCGCTCTTTCGGACAACTCGCTATTAAATCTAGTTGAGCGCATCATTTGGAGTCCGCCAATAAAAGGTTGCCACGTTACTCGGAGGCTGTTTCCCTCTCACTTCGCACCTCGCTTTATCCTTTTGTTTTTTTCGAGGTACTCTCTCATTCGTTCGATCAATTCAATTGGCTCTCCATCAAGCATTTGCATTTTGAATTAAAGTGTTATGTGACTACTTTGGGCATATTTACATTGTTATTCCGCCCTACCACAATGTACAATATGTTTGACGTGGACCAATTGAATTACACATGTTGAGGCATTTTAATTGATATGACTAATAAGTATTTTATAAATAGTAATGAATTGTGGTGATAATTAACCAGCTCAACATGTACTCTACTAGATATCGACGTGGGTTCCAATCTACTTCGCGTAGAAGCTATTTGAGGTATCCTGTTTTTAAACGATCAACTGTTGGGAAAAGGAACGATAAGAAACGTCGATCTAGTACTCAGAACCGTTCCCATGATGAGTCGAAGTTGTTACATCAGCATATCCATGAGAACCAATTTGGCGATGAATTTGTAATGGCTCATAATACAGCCATTTCTACATACGTGACATTTCCTAGTCTTGGGAAGAGTGATTCATGCCGGACTAGGTCTTATATTAAGCTCAGGCGTTTACGCTTCAAAGGCACTGTTAAGATTGAACGTGTCATCCCTGACATAAGCATGGACGGGTCAATTCCCAAGACGGATGGAGTATTCACTCTTGTTATCGTGGTTGACCGTAAACCCCATCTCAATTCATCTGGATGTCTCTTGACATTCGACGAGTTATTTGGTGCTAGGATACACAGTCATGGTAATTTGACCATCTCACCCTCGTTGAAGGACCGGTTCTACATACGGCACGTGTTGAAACGTGTGTTAGCTGTAGAGAAGGATACTACGATGGCTGATCTTGAAGGGACGACATACTTATCTAATTGGCGTTTCAATTGTTGGTCCTCATTTAAGGACCTTGATCGAGATACTTGTAATGGTGTGTATGCTAATATAAGCAAGAACGCCATATTAGTTTACTATTGCTGGATGTCGGACTGTGTGTCTAAGGCATCGACATTTGTATCATTTGACCTTGATTATATTGGATAATAATAAAATTATGTTGCATGCAAGTATAATATTTATTTTAAGCATTTATTGCATTAACGCATCCAGACCAAGTAGTACAAGCACATAAATTTATTTCAATGATTTGGGCTGAGACGGGTTACAATTATTGTTAATACATTCTTGGGCCGTAGCCTTAACTAACTCGCTTAATTGGGCCATAGACATAGTTATAGTGGACTCTGTCCTCTTCGCTCCCACCATTGAAGCAGAATCACCTGGGTCTAATGTGCTTGGGCCCAGTCTGTGTAATTCTCTGTAGGGGTGGATTGAAGAGCCCACGTCAGAGTCTGCATCGTGATGATTGGTCCCTACGGTGCTTCTGGTAGCCCATGTCTCTCCTGGTATTATAGTAATTGGGCTGTGCAGCCCATATCTAGAGGACGATGCGGACCTTATCAATTTCCTTTCCCATTTGCCATAGCCAACATGTGAGAAGTCCACGTCTTTATCCGTGAACTGTTTGGACAGTATCTTTACAGTCGGAGCCCGGAAAGGGATGTCTACGGAGTGCTTTGCCGTGGAGAGTTTCAATTTCCCTTTGAACTTGGCAAAGTGTGTCCTCTGGTGGACATTTGTGTCACTGACGCGATAGTATAACTTCCATGGGATAGGGTCTTTAAGTGAGAAGAACGAGGAAGAGAAATAGTGGAGATCTATGTTACATCTGATGGGAAATGTCCATGAAGCTTGTAAGGACTCATTTTCAGTCATCCTTTGGTCATGAATCTCCACTATGACTGCGCCAGTTGCGTTGATGGGCACCTGCTGTCTGTATTCTATGACACAATGGTCTATTTTCATGCAACTGCGACTGAGTCTGGCGCTAAGTTGAGACGCTGTGGAAGGAAATTGAAGTACTATCTCAGTTAGATCATGAGACAATTGGTACTCATCCCGTTGAGACTCTATGTAATTGAACGCTGTTGGTGGACGGACTAACTGAGACTCCATTGATGATAATTATAATATTAAGAACGGCCGCGCAGCGCACACTCTCTGAGTGATATTATTCAGACAAGCTACTGCTATGATTATACGATAGATAGAGAAAGTGATGTTAGAGAGAGTGTGAATATGATAATACTTTGAAGCATACAGGTCTATAAATAGGCACATTGTTGATTAATTCGTAATTGCAATTAAAATAAGTAGTTGTGTTAATTTTGCTTCAAAGTGATACGCAGTCGTTTTGTATAGAATGCGAAAGCTTTGTGTAGTGGCATTTTTGTAATAAAAGGCATGTCACCAATTGCTAAAGGCTTGTCACCAATTGGGGTCTCGCAAAACTGTCGTCTGCAATCGGTGAAAGGGTGACAATTTATACTAGAAGTCCCAATAGAACTCTCAATCTCCAACGTACACGTGGCGGCCATCCGTTATAATATT
ACCGGATGGCCGCGCGATTTTTTCCCATTCCGACGTGGCATTCCTTTAATTTAATTTACAGTGTTAACCTTTTGACTAGACCAATCACTTTGTGTCTGACGAGCCTAGATATTTGTGACAACTTAGTCCCCAAGTTGTTCAACAGTTATAAATTAAAGGAAACCTGCCCTGTCACTTTAATTCAAAATGCCTAAGCGCGATGCCCCGTGGCGCAATATGGCAGGTACCTCTAAGATTAGTAGGACCTCCAACTACTCTCCTCGATCTGGCCCAAAATATAATAAGGCCAATGATTGGGTTAACAGGCCCATGTACAGGAAGCCCAGGATTTATCGGGTTTTAAGAACTGCTGATGTTCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAATCATTTGAACAGCGCCATGACATTGCTCATACAGGGAAGGTCATATGTGTCTCTGATGTGACTAGAGGCAATGGCATTACTCACCGTGTTGGTAAGCGTTTCTGCATCAAGTCTGTGTACATTCTGGGTAAGATCTGGATGGATGACAACATCAAACTGAAGAATCACACCAACAGCGTCATGTTCTGGCTTGTTCGAGACAGGAGACCATATGGATCTCCTATGGACTTTGGACAGATATTCAACATGTTCGACAATGAGCCCAGTACTGCTACTGTTAAGAACGATCTCCGTGATCGTTTCCAGGTGATGCACAGGTTCTACGCCAAGGTGACAGGAGGGCAGTATGCAAGCAATGAACAAGCCATTGTCAAGCGTTTCTGGAAGGTCTACAACCATGTGGTCTACAACCATCAGGAAGCTGGGAAGTACGAGAATCACACTGAGAACGCATTATTACTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCAACGCTTAAGATTCGGATCTATTTTTATGATTCGATATCAAATTAATAAAAATTGAATTTTATTGAGTGATTCTCCAGTACATAATTTACATATGGTTTATCTGTTGCGAAACGAACAGCTAGGATTACATTATTAAGGGAAATAACACCTAACTGGTCTAAGTACAACAAGACTAATTGTTTAAATCTAGCTAAATATGTCGTCCCAGAAGCTTGAACTGATGTCGTCCAGACTTGGAAGTTTAGGTAAGCCTTGTGAAGATCCAACCTCTTCCTGAGGTTGTGGTTGAATCGGATCTGGACGTGGTACACTCTGGTTATTGTGTAATTGAGGTCCTCTACGCGGGATATCCTGAAAAACAGGGGATTTGTTATTTCCCAAGTATATACGCCACTCTGTGCCTGACGTGCAGTGATGTGTTCCCCTGTGCGTGAATCCATGGCCGATGCAGTCAATCTTCTGATATATGGAGCAACCGCACTCTAAGTCAAAACGCCTTCGCCTAATTGCTCTTCCCCTTTTGCAAGCTCTATGCTTTGGTTTAATAGAGGGGGGTGTTGAGGAAGATGAATTTTGCATTGTGAAGCGTCCACGCTCTCAGAGATGCATTTTCCTCTTTGTCGAGGAAATCTTTATAGCTAGCCCCCTCGCCAGGATTGCAGAGCACGATTGATGGTATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTGCAGTTGGATTGCCAGTCCCTTTGGGCCCCAATTAGTTCTTTCCAGTGCTTTAACTTTAAATAATTGGGGCTGATATCATCAATGACGTTATACTCTGCATTATTTGAGTAAACCTTGGAATTGAAGTCCAGGTGTCCACTCAAATAATTATGCGACCCCAATGCACGTGCCCACATGGTTTTGCCTGTTCTTGAATCACCTTCTATGATGATACTAATAGGTCGCTCAGGCCGCGCAGCGGCACCATTTCCGAAATAGTTGTTAGTCCATTCTTGCATTTCTTGAGGAACATTAATGAATGATGACAATGGAAATGGTGCAACCCAAGGCTCTGGAGCCTTTGCAAATATACGTTCCAAGTTAGACCGAATGTTATGGTGTTGAATCACATAGTCCTTGGGTTGCTCTTCTCTTAATATAAGAAGTGCCTGATCAATGGTTTTTGCGTTTAGAACTTTTGCATATGAGTCGTTGGCTGATTGGCTACCGCCTCTAGCACTTCTTCCGTCGACCTGGAATGTTCCCCATTCAACTGTATCTCCGTCCTTATCGACGTAGGACTTGACGTCGGAACTTGATTTAGCTGCCTGAATGTTCGGATGGAAATGTGTTGACCGGGATGGGGATACCAGGTCGAATAATCTGTTATTCGTGCAGCAGAATTTGCCTTCGAATTGAAGCAGGACGTGGAGATGAGGCTGCCCATCTTCGTGAAGCTCTCTTGCAATTTTGATGAATAATTTATTTGTTGGTGTATTTATGGCTTTTAGCTGTGAGAGAGCCTCATCTTTATATAGACTGCAGTGAGGATAAGTGAGGAAATAGTTTTTGGCATTTATACGAAAGCGTTTTGGTGGTGGCATTTTGGTAATAAAGGGGATGTCACCAATTACTCAAAGGCTTGTCACCAATTGGGCTCTCGCAAAACTGTCGTCTGCAATCGGTGAAAGGGTGACAATTTATACTAGAACCCCTAATAGAACTCTCAATCTCTACCATACACGTGGCGGCCATCCGTTATAATATT
Gene Information
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NCBI Accession
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YP_009547926.1
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Location
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426-1196 |
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Protein Name
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nuclear shuttle protein |
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Coding Region
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ATGTACTCTACTAGATATCGACGTGGGTTCCAATCTACTTCGCGTAGAAGCTATTTGAGGTATCCTGTTTTTAAACGATCAACTGTTGGGAAAAGGAACGATAAGAAACGTCGATCTAGTACTCAGAACCGTTCCCATGATGAGTCGAAGTTGTTACATCAGCATATCCATGAGAACCAATTTGGCGATGAATTTGTAATGGCTCATAATACAGCCATTTCTACATACGTGACATTTCCTAGTCTTGGGAAGAGTGATTCATGCCGGACTAGGTCTTATATTAAGCTCAGGCGTTTACGCTTCAAAGGCACTGTTAAGATTGAACGTGTCATCCCTGACATAAGCATGGACGGGTCAATTCCCAAGACGGATGGAGTATTCACTCTTGTTATCGTGGTTGACCGTAAACCCCATCTCAATTCATCTGGATGTCTCTTGACATTCGACGAGTTATTTGGTGCTAGGATACACAGTCATGGTAATTTGACCATCTCACCCTCGTTGAAGGACCGGTTCTACATACGGCACGTGTTGAAACGTGTGTTAGCTGTAGAGAAGGATACTACGATGGCTGATCTTGAAGGGACGACATACTTATCTAATTGGCGTTTCAATTGTTGGTCCTCATTTAAGGACCTTGATCGAGATACTTGTAATGGTGTGTATGCTAATATAAGCAAGAACGCCATATTAGTTTACTATTGCTGGATGTCGGACTGTGTGTCTAAGGCATCGACATTTGTATCATTTGACCTTGATTATATTGGATAA |
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Protein Sequence
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MYSTRYRRGFQSTSRRSYLRYPVFKRSTVGKRNDKKRRSSTQNRSHDESKLLHQHIHENQFGDEFVMAHNTAISTYVTFPSLGKSDSCRTRSYIKLRRLRFKGTVKIERVIPDISMDGSIPKTDGVFTLVIVVDRKPHLNSSGCLLTFDELFGARIHSHGNLTISPSLKDRFYIRHVLKRVLAVEKDTTMADLEGTTYLSNWRFNCWSSFKDLDRDTCNGVYANISKNAILVYYCWMSDCVSKASTFVSFDLDYIG |
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NCBI Accession
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YP_009547927.1
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Location
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1287-2168 |
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Protein Name
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movement protein |
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Coding Region
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ATGGAGTCTCAGTTAGTCCGTCCACCAACAGCGTTCAATTACATAGAGTCTCAACGGGATGAGTACCAATTGTCTCATGATCTAACTGAGATAGTACTTCAATTTCCTTCCACAGCGTCTCAACTTAGCGCCAGACTCAGTCGCAGTTGCATGAAAATAGACCATTGTGTCATAGAATACAGACAGCAGGTGCCCATCAACGCAACTGGCGCAGTCATAGTGGAGATTCATGACCAAAGGATGACTGAAAATGAGTCCTTACAAGCTTCATGGACATTTCCCATCAGATGTAACATAGATCTCCACTATTTCTCTTCCTCGTTCTTCTCACTTAAAGACCCTATCCCATGGAAGTTATACTATCGCGTCAGTGACACAAATGTCCACCAGAGGACACACTTTGCCAAGTTCAAAGGGAAATTGAAACTCTCCACGGCAAAGCACTCCGTAGACATCCCTTTCCGGGCTCCGACTGTAAAGATACTGTCCAAACAGTTCACGGATAAAGACGTGGACTTCTCACATGTTGGCTATGGCAAATGGGAAAGGAAATTGATAAGGTCCGCATCGTCCTCTAGATATGGGCTGCACAGCCCAATTACTATAATACCAGGAGAGACATGGGCTACCAGAAGCACCGTAGGGACCAATCATCACGATGCAGACTCTGACGTGGGCTCTTCAATCCACCCCTACAGAGAATTACACAGACTGGGCCCAAGCACATTAGACCCAGGTGATTCTGCTTCAATGGTGGGAGCGAAGAGGACAGAGTCCACTATAACTATGTCTATGGCCCAATTAAGCGAGTTAGTTAAGGCTACGGCCCAAGAATGTATTAACAATAATTGTAACCCGTCTCAGCCCAAATCATTGAAATAA |
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Protein Sequence
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MESQLVRPPTAFNYIESQRDEYQLSHDLTEIVLQFPSTASQLSARLSRSCMKIDHCVIEYRQQVPINATGAVIVEIHDQRMTENESLQASWTFPIRCNIDLHYFSSSFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILSKQFTDKDVDFSHVGYGKWERKLIRSASSSRYGLHSPITIIPGETWATRSTVGTNHHDADSDVGSSIHPYRELHRLGPSTLDPGDSASMVGAKRTESTITMSMAQLSELVKATAQECINNNCNPSQPKSLK |
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NCBI Accession
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YP_009508312.1
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Location
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187-936 |
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Protein Name
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coat protein |
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Coding Region
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ATGCCTAAGCGCGATGCCCCGTGGCGCAATATGGCAGGTACCTCTAAGATTAGTAGGACCTCCAACTACTCTCCTCGATCTGGCCCAAAATATAATAAGGCCAATGATTGGGTTAACAGGCCCATGTACAGGAAGCCCAGGATTTATCGGGTTTTAAGAACTGCTGATGTTCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAATCATTTGAACAGCGCCATGACATTGCTCATACAGGGAAGGTCATATGTGTCTCTGATGTGACTAGAGGCAATGGCATTACTCACCGTGTTGGTAAGCGTTTCTGCATCAAGTCTGTGTACATTCTGGGTAAGATCTGGATGGATGACAACATCAAACTGAAGAATCACACCAACAGCGTCATGTTCTGGCTTGTTCGAGACAGGAGACCATATGGATCTCCTATGGACTTTGGACAGATATTCAACATGTTCGACAATGAGCCCAGTACTGCTACTGTTAAGAACGATCTCCGTGATCGTTTCCAGGTGATGCACAGGTTCTACGCCAAGGTGACAGGAGGGCAGTATGCAAGCAATGAACAAGCCATTGTCAAGCGTTTCTGGAAGGTCTACAACCATGTGGTCTACAACCATCAGGAAGCTGGGAAGTACGAGAATCACACTGAGAACGCATTATTACTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCAACGCTTAAGATTCGGATCTATTTTTATGATTCGATATCAAATTAA |
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Protein Sequence
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MPKRDAPWRNMAGTSKISRTSNYSPRSGPKYNKANDWVNRPMYRKPRIYRVLRTADVPRGCEGPCKVQSFEQRHDIAHTGKVICVSDVTRGNGITHRVGKRFCIKSVYILGKIWMDDNIKLKNHTNSVMFWLVRDRRPYGSPMDFGQIFNMFDNEPSTATVKNDLRDRFQVMHRFYAKVTGGQYASNEQAIVKRFWKVYNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSISN |
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NCBI Accession
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YP_009508313.1
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Location
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933-1331 |
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Protein Name
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replication enhancer protein |
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Coding Region
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ATGGATTCACGCACAGGGGAACACATCACTGCACGTCAGGCACAGAGTGGCGTATATACTTGGGAAATAACAAATCCCCTGTTTTTCAGGATATCCCGCGTAGAGGACCTCAATTACACAATAACCAGAGTGTACCACGTCCAGATCCGATTCAACCACAACCTCAGGAAGAGGTTGGATCTTCACAAGGCTTACCTAAACTTCCAAGTCTGGACGACATCAGTTCAAGCTTCTGGGACGACATATTTAGCTAGATTTAAACAATTAGTCTTGTTGTACTTAGACCAGTTAGGTGTTATTTCCCTTAATAATGTAATCCTAGCTGTTCGTTTCGCAACAGATAAACCATATGTAAATTATGTACTGGAGAATCACTCAATAAAATTCAATTTTTATTAA |
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Protein Sequence
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MDSRTGEHITARQAQSGVYTWEITNPLFFRISRVEDLNYTITRVYHVQIRFNHNLRKRLDLHKAYLNFQVWTTSVQASGTTYLARFKQLVLLYLDQLGVISLNNVILAVRFATDKPYVNYVLENHSIKFNFY |
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NCBI Accession
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YP_009508314.1
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Location
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1078-1470 |
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Protein Name
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transcriptional activator protein |
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Coding Region
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ATGCAAAATTCATCTTCCTCAACACCCCCCTCTATTAAACCAAAGCATAGAGCTTGCAAAAGGGGAAGAGCAATTAGGCGAAGGCGTTTTGACTTAGAGTGCGGTTGCTCCATATATCAGAAGATTGACTGCATCGGCCATGGATTCACGCACAGGGGAACACATCACTGCACGTCAGGCACAGAGTGGCGTATATACTTGGGAAATAACAAATCCCCTGTTTTTCAGGATATCCCGCGTAGAGGACCTCAATTACACAATAACCAGAGTGTACCACGTCCAGATCCGATTCAACCACAACCTCAGGAAGAGGTTGGATCTTCACAAGGCTTACCTAAACTTCCAAGTCTGGACGACATCAGTTCAAGCTTCTGGGACGACATATTTAGCTAG |
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Protein Sequence
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MQNSSSSTPPSIKPKHRACKRGRAIRRRRFDLECGCSIYQKIDCIGHGFTHRGTHHCTSGTEWRIYLGNNKSPVFQDIPRRGPQLHNNQSVPRPDPIQPQPQEEVGSSQGLPKLPSLDDISSSFWDDIFS |
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NCBI Accession
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YP_009508315.1
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Location
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1433-2467 |
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Protein Name
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replication-associated protein |
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Coding Region
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ATGCCACCACCAAAACGCTTTCGTATAAATGCCAAAAACTATTTCCTCACTTATCCTCACTGCAGTCTATATAAAGATGAGGCTCTCTCACAGCTAAAAGCCATAAATACACCAACAAATAAATTATTCATCAAAATTGCAAGAGAGCTTCACGAAGATGGGCAGCCTCATCTCCACGTCCTGCTTCAATTCGAAGGCAAATTCTGCTGCACGAATAACAGATTATTCGACCTGGTATCCCCATCCCGGTCAACACATTTCCATCCGAACATTCAGGCAGCTAAATCAAGTTCCGACGTCAAGTCCTACGTCGATAAGGACGGAGATACAGTTGAATGGGGAACATTCCAGGTCGACGGAAGAAGTGCTAGAGGCGGTAGCCAATCAGCCAACGACTCATATGCAAAAGTTCTAAACGCAAAAACCATTGATCAGGCACTTCTTATATTAAGAGAAGAGCAACCCAAGGACTATGTGATTCAACACCATAACATTCGGTCTAACTTGGAACGTATATTTGCAAAGGCTCCAGAGCCTTGGGTTGCACCATTTCCATTGTCATCATTCATTAATGTTCCTCAAGAAATGCAAGAATGGACTAACAACTATTTCGGAAATGGTGCCGCTGCGCGGCCTGAGCGACCTATTAGTATCATCATAGAAGGTGATTCAAGAACAGGCAAAACCATGTGGGCACGTGCATTGGGGTCGCATAATTATTTGAGTGGACACCTGGACTTCAATTCCAAGGTTTACTCAAATAATGCAGAGTATAACGTCATTGATGATATCAGCCCCAATTATTTAAAGTTAAAGCACTGGAAAGAACTAATTGGGGCCCAAAGGGACTGGCAATCCAACTGCAAATACGGAAAGCCAGTTCAAATTAAAGGCGGAATACCATCAATCGTGCTCTGCAATCCTGGCGAGGGGGCTAGCTATAAAGATTTCCTCGACAAAGAGGAAAATGCATCTCTGAGAGCGTGGACGCTTCACAATGCAAAATTCATCTTCCTCAACACCCCCCTCTATTAA |
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Protein Sequence
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MPPPKRFRINAKNYFLTYPHCSLYKDEALSQLKAINTPTNKLFIKIARELHEDGQPHLHVLLQFEGKFCCTNNRLFDLVSPSRSTHFHPNIQAAKSSSDVKSYVDKDGDTVEWGTFQVDGRSARGGSQSANDSYAKVLNAKTIDQALLILREEQPKDYVIQHHNIRSNLERIFAKAPEPWVAPFPLSSFINVPQEMQEWTNNYFGNGAAARPERPISIIIEGDSRTGKTMWARALGSHNYLSGHLDFNSKVYSNNAEYNVIDDISPNYLKLKHWKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENASLRAWTLHNAKFIFLNTPLY |
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NCBI Accession
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YP_009508316.1
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Location
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2053-2310 |
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Protein Name
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AC4 protein |
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Coding Region
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ATGGGCAGCCTCATCTCCACGTCCTGCTTCAATTCGAAGGCAAATTCTGCTGCACGAATAACAGATTATTCGACCTGGTATCCCCATCCCGGTCAACACATTTCCATCCGAACATTCAGGCAGCTAAATCAAGTTCCGACGTCAAGTCCTACGTCGATAAGGACGGAGATACAGTTGAATGGGGAACATTCCAGGTCGACGGAAGAAGTGCTAGAGGCGGTAGCCAATCAGCCAACGACTCATATGCAAAAGTTCTAA |
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Protein Sequence
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MGSLISTSCFNSKANSAARITDYSTWYPHPGQHISIRTFRQLNQVPTSSPTSIRTEIQLNGEHSRSTEEVLEAVANQPTTHMQKF |