Tomato chlorotic leaf distortion virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000894835.3
Isolate Venezuela
Release date 2016/8/8
Submitter Zambrano,K., Geraud-Pouey,F., Chirinos,D., Romay,G., Marys,E., Geraud,F.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_015961
ACCGGATGGCCGCGCGATTTTTTGCCCCCCTTCGCGCGATTTTACTCTCTTGCCCTCGCGCGCTCGCTCTCCGTACGCGCTGGTGTGCAGTGGTGTACCGCTTTTGCCCTTGGTGCCCGTTTGAATTAAAGGCTCTTTAATTCAAAAATATCTCGACTTTCGGCAATTTCTATGGCTCTCTCTCTTCTGTCAACGTGGCGCATTATAGACCATGGTCTTAAATAAGTTAAGCTTGAACATGTAGAAATTGCCTTACATGGCACGACAATTCATTGCCGATTGTTCATGCCTTGCTACGTGGACCATTTAAATTCCTTGTTGGCAGCCAATTTAAATGCTTGTTTAACTGATTTATTTATAAATACTTTATATGGTGGGAATGAATTCATTATAACGTCTGTGTATAGGCAATAGTTAATTGTGTATATTTTATAATTGAAGATGTTCTCTGTTAGGTACAGACGTGGAGCCTACCACAGTCAACCACGTGGACAAACACGTCAGCCTATGTTTAAAAGGCAGGCCCATGTTAAACGCAATGATGGCAGGCGTCGAGCGACCCAGAATCTGAAGGCCTCTGATGAGCCCAAGATGACTGCCCAGCGGATTCACGAGAACCAGTACGGTTCGGAGTTTATGATGGCCCACAATACAGCCATATCCACTTTCATCAGCTACCCTGAGTTATGCAAAGCCCAACCGAACCGAACTAGGTCGTACATCAAGTTGAAACGGCTGCGTTTCAAGGGAACTGTGAAGATTGAACGTGTTGCCACTGACGTCAGCATGGATGGTTATGGCCCCAAGACGGAAGGGGTATTCACAATGGTCATAGTTGTTGACCGCAAACCGCATTTGCCTGCGTCTGGGTGCCTGCCAACCTTCGATGAACTCTTCGGTGCAAGAATCCACAGCCATGGTAACTTGGCCGTATCTCCTTCACTGAAAGACCGTTTCTACATACGCCACGTGTTGAAGCGAGTATTGTCCGTGGAGAAGGACAGTCTGATGGTAGACGTGGAAGGATCAACTGCCCTGTCTAATAGGCGTTTTAATTGTTGGTCTAGTTTTAAGGACCTTGATGTTGAGTCACGTAAGGGTGTTTATGACAACATAAGCAAGAACGCCCTGTTAGTTTATTACTGTTGGATGTCTGACACCGTGTCCAAGGCATCGACATTTGTATCGTTTGACCTCGATTATATCGGGTGATTAATGAAAAGGCACTATTAATTTAAATAAAATTCATTTTTATTTCAAGTTCTTGGGCTGTGCCCCACTACAATTGCTCTTAATACATTCTTGGACCGTAGTCCTTACTAGTTCGTTTAATTGGGCCACCGACATCGTAATGTTGGACTCTGCCCTTCTCGCCCCCACCATGGATGCAGACTCACCCGGATCTATTGCGCTTGACCCGAGCCTGTGCAGCTCTCTGTATGGGTGGATCTCGTTCTCCGTCTCGGAGTCCGCGTCCGATGGGCCAATGCCAACTGCGCTCCTTGAAGCCCATGATTCACCAGGCCTAATTTCAATTGGGCCTCTGAGCCCAACACGAGACATGGACGCGCATCTCAATGTCTTCCTTTCCCATCGTCCGTAGTCCACGTGTGAGAAATCCACGTCCTTCTCTGTGAATTGTTTGGAGTGGATTTTTACAGTCGGTGCTCTGAACGGGATGTCGACGGAATGTTTCGCCGTCGACAGTTTCAGCTTCCCCTTGAATTTCGTGAAGTGGGTCTGCTGCTGGACGTTCGTGTCGCACACTCTGTAGTAGAGTTTCCATGGAATCGGGTCCTTCAAGGAGAAGAAGGACGATGAAAAATAGTGGAGATCTATGTTGCACCTGATCGGAAAAGTCCACGATGCCTGTAAAGACTCGTTGTCAGTCAGTCTCCGGTCGTGAATCTCCACAATTACCGTCCCGGTGGCGTTTATGGGTACCTGTTGCCTGTATTCGATGACGCAATGGTCGATTTTCATACAGCTCCGACTAAGCCTCGCCGTCAATTGAGCCGCCGTTGATGGAAATTGGAGGAATATCTCAGTTAAGTCATGGGAAAGCTGATACTCGTCTCGATGGGACTCAATGTAGTTGAAAGCACTGGGAGGATTAACTAACTGAGATTCCATTTGAAGAATATTAGGTCGCGCAGCGACACGGGTTGAAGAAGATGAACAAGGAGTGAAAGTGAACAAGAATTGTCGAAGAAGGTAAACAGGAACTTAGTGAGGAAGTCAAAACAGATAAATCTGTTCTGGGTGGTTATGAAAATCAGTTTATATTTACTGATTTTGTTGTGAAGGTAGAAATTGTGTTTAAGATCTTCTGTTTTTGAGAAAGAGAAGAGTGCTGAAGAAGAATTTGAGGATAATTGTTAAGAGGAAGATGATCAGAGAGAAGTCGTTCTGGGAAATTATGTTAATAATTGGGAAAGTTCTTCTTCTATTTATAAATGTATGGTGGCATTTTTGTAATAAGAGGGGTGTACACCGATTGAGCTCCTCTCAAACTTGCTGATTGTATTGGTGTATTGGGGTAACTTATATACTAGAAGGTTCATTAACGGATCTTCGACACGTGGCGGCCATCCGCTATAATATT

NC_015962
ACCGGATGGCCGCGCGATTTTTTCCCCCACCCGTACGCGCGCCCCGCCTTTAATTTGAGTTAAAGCGAAATCTTTCGCGTCGTCCAATGATATTGCGTCTGACCAGCCTAGATATTTGCAAAAAACTTGGGCCCTAAGTTTTTGGGTGGTTATAAATTAAAGGCTTAACGGGCCTATGTCTTTAATTCAAAATGCCTAAGCGCGATCTCCCATGGCGCGCGATGCCCGGTACGTCAAAGGTCACCCGCAATGCGAATTACTCCCCACGCGCACGCATCGGCCCAACAACGAACAGGGCCACGGAATGGGTTAACAGGCCCATGTACAGGAAGCCCAGAATATATCGGACGCTAAGGACTCCCGATGTTCCAAGAGGTTGTGAAGGCCCGTGTAAGGTCCAGTCTTATGAACAGCGTCACGATATTGCTCACACTGGTAAGGTGATGTGTATTTCCGATGTGACACGTGGCAATGGTATTACCCACCGTGTTGGTAAGCGTTTCTGTGTTAAGTCCGTATACATATTAGGCAAGGTGTGGATGGATGACAACATCAAGTTGAAGAACCACACTAACAGCGTTATGTTCTGGTTAGTTAGGGACCGGAGACCGTATGGCACTCCTATGGATTTTGGACAGGTATTTAATATGTTTGATAATGAGCCCAGCACTGCCACCGTTAAGAACGATCTCCGTGATCGTTACCAGGTGATGAAGAAGTTCTATGCCAAGGTGACAGGTGGACAGTATGCCAGCAACGAGCAGGCTCTGGTCAAGCGTTTCTGGAAGGTCAACAATTATGTGGTGTACAACCACCAGGAGGCTGGGAAGTATGAGAATCATACGGAGAACGCCCTGTTATTGTATATGGCATGTACCCATGCCTCTAACCCCGTGTATGCAACCCTTAAGATTCGGATCTACTTCTACGATTCGATAATGAATTAATAAAGTTTGAATTTTATTGAATGATTTTCTAGTACATGATTGACGTACGCCTTGTCGGTGGCGTATCGTACAGCTCTAATTACATTGTTAAGGGAAATTACGCCTAACTGATCTAAATACATCATAACTAAATGCCTAAACCTAAACAAATAAGTCTTCCCAGAAGCTTTCAGGGATGTCGTCCAGACTTGGAAATTCAGGTAGGCTTTGTGGAGATGCAACGCTCTCCTGAGGTTGTGGTTGAACCGTATCTGGAGGTGGTACACCCTCGTTCTGGTGTATGGCATGTCCTCTACCTGGGAAATCTTGAAATACAGGGGATTTGTTATCTCCCAGATATAAACGCCATTCTCTGCTTGACGCGCATTGATGAATTCCCCTGTGCGTGAATCCATGATCTCTGCAGTTTATGTCTACGTAAGCTGTGCAATTGCACCCCCAGTCAAGACGCCGTCTCCTGATGGCTCTCCTCTTGGGCTGTTTCTTCTTGGCCTGCCTGTGTCTCTTCTTGATACAGGGGGGAGTCGAGTGTGATGAAGACAGCATTCTTGAGTGTCCAGTTCCTGAGGGATGCGTTTTCCTCTTTGTTCAGGAAATCTTTATAGCTGGCACCCTCACCTGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTCCCGTACTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCAAGGAGCTCTTTCCAGTGCTTCAACTTTAAGTATTGCGGAGAGACGTCATCAATGACGTTATATTCCACTTCGTTCGAGTAAACCTTTGAGTTGAAGTCCAGGTGTCCACTCAGATAATTATGTGGGCCTAAGGCACGAGCCCACATCGTCTTGCCTGTTCTTGAATCACCCTCAACTATGAGACTTATTGGACGATTTGGCCGCGCAGCGGAATCAAGCCCAAAATAACTATCGGCCCACTCTTGCATCTCGTCCGGAACGTTAGTGAAAGAGGAGAGACGAAACGGAGGGACCCACGGTTCCGGAGCCTTCTTGAATATTCTGGTTGCGTTAGCAACCAGGTTGTGGTGTTGAAGGAAGAAATGTTGTGGTTGTTCTTCCTTTATGATTTGCAGAGCTTGCTCGGCAGAGGCAGCATTCAACGCCTTTGCGTATGTATCGTTGACTGTTTGCTGACCTCCTCTTGCAGATCTGCCGTCGATCTGGAATTCTCCCCATTCAATGGTGTCTCCATCCTTGTCGATGTAGGACTTAACGTCCGAGCTTGATTTAKCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGAGACCAGATCGAAGAATCTGTTATTCGTGCACTGGTACTTCCCCTCGAACTGGATGAGTATGTGGAGATGAGGCTCCCCATTCTCGTGAAGCTCTCTGCAGATTTTGATGAACTTCTTGTTTACTGGGGTTTTTAGGTTTTGTAATTGGGAAAGTGCTTCTTCTTTAGTAAGAGAGCACTGGGGATAAGTGAGGAAATAGTTTTTGGAGTTAATTCTAAATTTCTTAGGCGGTGGCATTTTTGTAATAAGAGGGGTGTACACCGATTGAGCTCCTCTCAAACTTGCTGATTGTATTGGTGTATTGGGGTAACTTATATACTAGAAGGTTCATTAACGGATCGTTGACACGTGGCGGCCATCCGCTATAATATT

Gene Information

NCBI Accession YP_004821540.1
Location 442-1212
Gene Name BV1
Protein Name nuclear shuttle protein
Coding Region ATGTTCTCTGTTAGGTACAGACGTGGAGCCTACCACAGTCAACCACGTGGACAAACACGTCAGCCTATGTTTAAAAGGCAGGCCCATGTTAAACGCAATGATGGCAGGCGTCGAGCGACCCAGAATCTGAAGGCCTCTGATGAGCCCAAGATGACTGCCCAGCGGATTCACGAGAACCAGTACGGTTCGGAGTTTATGATGGCCCACAATACAGCCATATCCACTTTCATCAGCTACCCTGAGTTATGCAAAGCCCAACCGAACCGAACTAGGTCGTACATCAAGTTGAAACGGCTGCGTTTCAAGGGAACTGTGAAGATTGAACGTGTTGCCACTGACGTCAGCATGGATGGTTATGGCCCCAAGACGGAAGGGGTATTCACAATGGTCATAGTTGTTGACCGCAAACCGCATTTGCCTGCGTCTGGGTGCCTGCCAACCTTCGATGAACTCTTCGGTGCAAGAATCCACAGCCATGGTAACTTGGCCGTATCTCCTTCACTGAAAGACCGTTTCTACATACGCCACGTGTTGAAGCGAGTATTGTCCGTGGAGAAGGACAGTCTGATGGTAGACGTGGAAGGATCAACTGCCCTGTCTAATAGGCGTTTTAATTGTTGGTCTAGTTTTAAGGACCTTGATGTTGAGTCACGTAAGGGTGTTTATGACAACATAAGCAAGAACGCCCTGTTAGTTTATTACTGTTGGATGTCTGACACCGTGTCCAAGGCATCGACATTTGTATCGTTTGACCTCGATTATATCGGGTGA
Protein Sequence MFSVRYRRGAYHSQPRGQTRQPMFKRQAHVKRNDGRRRATQNLKASDEPKMTAQRIHENQYGSEFMMAHNTAISTFISYPELCKAQPNRTRSYIKLKRLRFKGTVKIERVATDVSMDGYGPKTEGVFTMVIVVDRKPHLPASGCLPTFDELFGARIHSHGNLAVSPSLKDRFYIRHVLKRVLSVEKDSLMVDVEGSTALSNRRFNCWSSFKDLDVESRKGVYDNISKNALLVYYCWMSDTVSKASTFVSFDLDYIG

NCBI Accession YP_004821541.1
Location 1252-2133
Gene Name BC1
Protein Name movement protein
Coding Region ATGGAATCTCAGTTAGTTAATCCTCCCAGTGCTTTCAACTACATTGAGTCCCATCGAGACGAGTATCAGCTTTCCCATGACTTAACTGAGATATTCCTCCAATTTCCATCAACGGCGGCTCAATTGACGGCGAGGCTTAGTCGGAGCTGTATGAAAATCGACCATTGCGTCATCGAATACAGGCAACAGGTACCCATAAACGCCACCGGGACGGTAATTGTGGAGATTCACGACCGGAGACTGACTGACAACGAGTCTTTACAGGCATCGTGGACTTTTCCGATCAGGTGCAACATAGATCTCCACTATTTTTCATCGTCCTTCTTCTCCTTGAAGGACCCGATTCCATGGAAACTCTACTACAGAGTGTGCGACACGAACGTCCAGCAGCAGACCCACTTCACGAAATTCAAGGGGAAGCTGAAACTGTCGACGGCGAAACATTCCGTCGACATCCCGTTCAGAGCACCGACTGTAAAAATCCACTCCAAACAATTCACAGAGAAGGACGTGGATTTCTCACACGTGGACTACGGACGATGGGAAAGGAAGACATTGAGATGCGCGTCCATGTCTCGTGTTGGGCTCAGAGGCCCAATTGAAATTAGGCCTGGTGAATCATGGGCTTCAAGGAGCGCAGTTGGCATTGGCCCATCGGACGCGGACTCCGAGACGGAGAACGAGATCCACCCATACAGAGAGCTGCACAGGCTCGGGTCAAGCGCAATAGATCCGGGTGAGTCTGCATCCATGGTGGGGGCGAGAAGGGCAGAGTCCAACATTACGATGTCGGTGGCCCAATTAAACGAACTAGTAAGGACTACGGTCCAAGAATGTATTAAGAGCAATTGTAGTGGGGCACAGCCCAAGAACTTGAAATAA
Protein Sequence MESQLVNPPSAFNYIESHRDEYQLSHDLTEIFLQFPSTAAQLTARLSRSCMKIDHCVIEYRQQVPINATGTVIVEIHDRRLTDNESLQASWTFPIRCNIDLHYFSSSFFSLKDPIPWKLYYRVCDTNVQQQTHFTKFKGKLKLSTAKHSVDIPFRAPTVKIHSKQFTEKDVDFSHVDYGRWERKTLRCASMSRVGLRGPIEIRPGESWASRSAVGIGPSDADSETENEIHPYRELHRLGSSAIDPGESASMVGARRAESNITMSVAQLNELVRTTVQECIKSNCSGAQPKNLK

NCBI Accession YP_004821542.1
Location 192-947
Gene Name AV1
Protein Name capsid protein
Coding Region ATGCCTAAGCGCGATCTCCCATGGCGCGCGATGCCCGGTACGTCAAAGGTCACCCGCAATGCGAATTACTCCCCACGCGCACGCATCGGCCCAACAACGAACAGGGCCACGGAATGGGTTAACAGGCCCATGTACAGGAAGCCCAGAATATATCGGACGCTAAGGACTCCCGATGTTCCAAGAGGTTGTGAAGGCCCGTGTAAGGTCCAGTCTTATGAACAGCGTCACGATATTGCTCACACTGGTAAGGTGATGTGTATTTCCGATGTGACACGTGGCAATGGTATTACCCACCGTGTTGGTAAGCGTTTCTGTGTTAAGTCCGTATACATATTAGGCAAGGTGTGGATGGATGACAACATCAAGTTGAAGAACCACACTAACAGCGTTATGTTCTGGTTAGTTAGGGACCGGAGACCGTATGGCACTCCTATGGATTTTGGACAGGTATTTAATATGTTTGATAATGAGCCCAGCACTGCCACCGTTAAGAACGATCTCCGTGATCGTTACCAGGTGATGAAGAAGTTCTATGCCAAGGTGACAGGTGGACAGTATGCCAGCAACGAGCAGGCTCTGGTCAAGCGTTTCTGGAAGGTCAACAATTATGTGGTGTACAACCACCAGGAGGCTGGGAAGTATGAGAATCATACGGAGAACGCCCTGTTATTGTATATGGCATGTACCCATGCCTCTAACCCCGTGTATGCAACCCTTAAGATTCGGATCTACTTCTACGATTCGATAATGAATTAA
Protein Sequence MPKRDLPWRAMPGTSKVTRNANYSPRARIGPTTNRATEWVNRPMYRKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDIAHTGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKVWMDDNIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMKKFYAKVTGGQYASNEQALVKRFWKVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIMN

NCBI Accession YP_004821543.1
Location 944-1342
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAATTCATCAATGCGCGTCAAGCAGAGAATGGCGTTTATATCTGGGAGATAACAAATCCCCTGTATTTCAAGATTTCCCAGGTAGAGGACATGCCATACACCAGAACGAGGGTGTACCACCTCCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGCATCTCCACAAAGCCTACCTGAATTTCCAAGTCTGGACGACATCCCTGAAAGCTTCTGGGAAGACTTATTTGTTTAGGTTTAGGCATTTAGTTATGATGTATTTAGATCAGTTAGGCGTAATTTCCCTTAACAATGTAATTAGAGCTGTACGATACGCCACCGACAAGGCGTACGTCAATCATGTACTAGAAAATCATTCAATAAAATTCAAACTTTATTAA
Protein Sequence MDSRTGEFINARQAENGVYIWEITNPLYFKISQVEDMPYTRTRVYHLQIRFNHNLRRALHLHKAYLNFQVWTTSLKASGKTYLFRFRHLVMMYLDQLGVISLNNVIRAVRYATDKAYVNHVLENHSIKFKLY

NCBI Accession YP_004821544.1
Location 1089-1493
Gene Name AC2
Protein Name transactivator protein
Coding Region ATGCTGTCTTCATCACACTCGACTCCCCCCTGTATCAAGAAGAGACACAGGCAGGCCAAGAAGAAACAGCCCAAGAGGAGAGCCATCAGGAGACGGCGTCTTGACTGGGGGTGCAATTGCACAGCTTACGTAGACATAAACTGCAGAGATCATGGATTCACGCACAGGGGAATTCATCAATGCGCGTCAAGCAGAGAATGGCGTTTATATCTGGGAGATAACAAATCCCCTGTATTTCAAGATTTCCCAGGTAGAGGACATGCCATACACCAGAACGAGGGTGTACCACCTCCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGCATCTCCACAAAGCCTACCTGAATTTCCAAGTCTGGACGACATCCCTGAAAGCTTCTGGGAAGACTTATTTGTTTAG
Protein Sequence MLSSSHSTPPCIKKRHRQAKKKQPKRRAIRRRRLDWGCNCTAYVDINCRDHGFTHRGIHQCASSREWRLYLGDNKSPVFQDFPGRGHAIHQNEGVPPPDTVQPQPQESVASPQSLPEFPSLDDIPESFWEDLFV

NCBI Accession YP_004821545.1
Location 1390-2490
Gene Name AC1
Protein Name REP protein
Coding Region ATGCCACCGCCTAAGAAATTTAGAATTAACTCCAAAAACTATTTCCTCACTTATCCCCAGTGCTCTCTTACTAAAGAAGAAGCACTTTCCCAATTACAAAACCTAAAAACCCCAGTAAACAAGAAGTTCATCAAAATCTGCAGAGAGCTTCACGAGAATGGGGAGCCTCATCTCCACATACTCATCCAGTTCGAGGGGAAGTACCAGTGCACGAATAACAGATTCTTCGATCTGGTCTCCCCAACCAGGTCAGCACATTTCCATCCAAACATTCAGGGAGMTAAATCAAGCTCGGACGTTAAGTCCTACATCGACAAGGATGGAGACACCATTGAATGGGGAGAATTCCAGATCGACGGCAGATCTGCAAGAGGAGGTCAGCAAACAGTCAACGATACATACGCAAAGGCGTTGAATGCTGCCTCTGCCGAGCAAGCTCTGCAAATCATAAAGGAAGAACAACCACAACATTTCTTCCTTCAACACCACAACCTGGTTGCTAACGCAACCAGAATATTCAAGAAGGCTCCGGAACCGTGGGTCCCTCCGTTTCGTCTCTCCTCTTTCACTAACGTTCCGGACGAGATGCAAGAGTGGGCCGATAGTTATTTTGGGCTTGATTCCGCTGCGCGGCCAAATCGTCCAATAAGTCTCATAGTTGAGGGTGATTCAAGAACAGGCAAGACGATGTGGGCTCGTGCCTTAGGCCCACATAATTATCTGAGTGGACACCTGGACTTCAACTCAAAGGTTTACTCGAACGAAGTGGAATATAACGTCATTGATGACGTCTCTCCGCAATACTTAAAGTTGAAGCACTGGAAAGAGCTCCTTGGGGCCCAAAAAGACTGGCAGTCAAATTGCAAGTACGGGAAGCCAGTTCAAATTAAAGGAGGGATCCCATCAATCGTGCTCTGCAATCCAGGTGAGGGTGCCAGCTATAAAGATTTCCTGAACAAAGAGGAAAACGCATCCCTCAGGAACTGGACACTCAAGAATGCTGTCTTCATCACACTCGACTCCCCCCTGTATCAAGAAGAGACACAGGCAGGCCAAGAAGAAACAGCCCAAGAGGAGAGCCATCAGGAGACGGCGTCTTGA
Protein Sequence MPPPKKFRINSKNYFLTYPQCSLTKEEALSQLQNLKTPVNKKFIKICRELHENGEPHLHILIQFEGKYQCTNNRFFDLVSPTRSAHFHPNIQGXKSSSDVKSYIDKDGDTIEWGEFQIDGRSARGGQQTVNDTYAKALNAASAEQALQIIKEEQPQHFFLQHHNLVANATRIFKKAPEPWVPPFRLSSFTNVPDEMQEWADSYFGLDSAARPNRPISLIVEGDSRTGKTMWARALGPHNYLSGHLDFNSKVYSNEVEYNVIDDVSPQYLKLKHWKELLGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLNKEENASLRNWTLKNAVFITLDSPLYQEETQAGQEETAQEESHQETAS