Tomato chino La Paz virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000842645.1
Isolate Mexico: Baja California Sur, La Paz
Release date 2015/2/12
Submitter Holguin-Pena,R.J., Vazquez-Juarez,R., Rivera-Bustamante,R.F.
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_005843
ACCGGATGGCCGCGCCTTTTTTGACCCGGCCCATCTTCGGAAATTTCGTAGAAATTTCATAGATAAAATTAGCCAATCAGTGCACGCGTGTGCGGTCTAATTATTAATAACTTGGCGACTAAGTCGTTTTCTGGTCTATAAATTTGTCGTTATGTGTGTGGTCCAGATATACATATTTTGAAAATGCCTAAGCGGGATGCCCCATGGCGTTTAATGTCGGGTACTCCTAAGGTTAGTCGCTCCTCTAATTATGTCCCTCCTGATGGATTGGGCCGTAAATTTGATAAATCATCTGCTTGGGCCAACAGGCCCATGTACAGAAAGCCCAGGATATATCGGACCGTAAGGTCTGCCGATGTTCCTCGAGGCTGTGAAGGGCCTTGCAAGATTCAGTCGTTTGAGCAGCGTCACGATATATCTCATACTGGAAAGGTGATGTGTATCTCCGATGTTACTCGCGGTAATGGCATTACCCATCGGGTTGGTAAACGTTTCTGCGTGAAGTCCGTGTATATATTAGGGAAGATCTGGATGGACGATAACATCAAGCTCAAGAACCACACTAACAGCGTTATGTTCTGGTTAGTTAGGGATAGGAGGCCCAGCGGAACGGCTATGGATTTTGGTCACCTCTTCAACATGTTTGACAATGAGCCTAGTACTGCCACTGTGAAGAACGATCTTAGAGATCGTTTCCAAGTGCTGCACAGGTTTCATGCGAAGGTGACTGGTGGTCAGTATGCAAGCAATGAGCAGACGTTGGTGAAGCGTTTTCGGCGGGTGAATCAGCGTGTAACATATAATAATCAGGAGGCAGCTCGGTATGAAAACCATACGGAGAACGCCTTAATGTTGTACATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACTCTTAAGATCCGGATCTATTTTTATGATTCGGTGTTAAATTAATAAATTTTGAATTTTATTGAATAATTCTCAAGTACATGATTTACATACCATCTGTCTGTTGCGAAGCGAACAGCTCTAATTACATTATTAATGCAAATAACGCCTAATCTATCTAAATACAATAAGACTAAATATTTAAATCTACTTAAGTAAGTCGTCCCAGAAGCTCGAACTGATGTCGTCCAGATTTGGTAGTTGAGGTACGCTTTGTGTAGACTCAACGCCTTCCTGAGGTTGTGGTTGAACCTTATTTGGATGTGGTAAATCCTGCTGTTGGTGTAAATTGGGTCCTCTGTTTTGATTATCGTGAAATAGAGGGGATTTGGTACCTCCCAGATAAAAACGGAATTCTCTGCCTGTTCCACAGTGATGCTCTCCCCGGTGCGTGAATCCATTGTTGGCGCAGTCGATGTGTTGGTAGAATGAGCAGCCACAGTTTAGGTCTATTCTCTTGCGACGAATCCTGGACTTTGCAATCTTGTGCTTAGGCTTGATAGAGGGTGGAGTTGAGGAAGATGAATTTTGCATTGTGGAGGGTCCAAGCTTTTAGTGCTGCATTTTCCTCTTTTTCAAGGGAACATTTATAGCTGGCTCCCTCTCCTGGATTGCAGAGCACGATTGATGGTATCCCACCTTTAATTTGAACTGGCTTCCCGTATTTGCAGTTGGACTGCCAGTCCTTTTGGGCCCCAATCAGCTCTTTCCAATGTTTCATCTTTAAATATTGCGGAGTGACGTCATCAATGACGTTGTACTCCACATCATTTGAGTAAACCCTAGGATTGAAATCCAAGTGTCCACTCAAATAATTATGTGGTCCTAAAGCACGAGCCCACATCGTCTTTCCTGTCCTCGAATCACCCTCGATGATTATACTAATAGGTCTCTCCGGCCGCGCAGCGGCACCCCTACCAAAATAATCATCAGCCCACTCTTGCATCTCGTCCGGAACGTTCGTGAAGGAGGAGAGTGGAAACGGAGGAACCCATGGTTCCGGAGCCTTAGCGAATATCCTGTCTAAGTTACTAGACAGGTTGTGATATTGAAAAAGAAACTCTTTGGGGAGCTTCTCTTTAATAATTCGCATGGCTTCTTCTTTCGAGGACGCATTTAGGGCCTCTGCGGCAGCGTCGTTAGCTGTTTGCTGACCTCCTCTAGCAGATCTTCCGTCGATCTGGAATTCTCCCCATTCCAATGTATCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAACTGTCTTTGATTCGTGATTTGGATTTTCCCTTCGAACTGCATAAGCACGTGGAGATGATGTTCCCCATTTTCGTGCAGTTCTCTGCAGATCTTGATGTATTTTTTGTTAGAAGGAAGTTGTATGGACAGTAGTTGATCTAGGGCTTCTTCTTTTGTAAGAGGACATTGGGGGTATGTTAGGAAGATATTTTTTGCTTGAAGGCGAAAACGTTTAGGTGGTGGCATTTTTGTAATTAATAGATGTACTCCGATTGCCTCTTCTTACAAAAGTCTATATGAATTGGAGTATTGGAGTACAATATATACTAGAAGGTCCTATAGAACTTTCAATCGTATCCGCTCACGTGGCGGCCATCCGTTTAATATT

Gene Information

NCBI Accession YP_006428.1
Location 184-939
Gene Name AR1
Protein Name coat protein
Coding Region ATGCCTAAGCGGGATGCCCCATGGCGTTTAATGTCGGGTACTCCTAAGGTTAGTCGCTCCTCTAATTATGTCCCTCCTGATGGATTGGGCCGTAAATTTGATAAATCATCTGCTTGGGCCAACAGGCCCATGTACAGAAAGCCCAGGATATATCGGACCGTAAGGTCTGCCGATGTTCCTCGAGGCTGTGAAGGGCCTTGCAAGATTCAGTCGTTTGAGCAGCGTCACGATATATCTCATACTGGAAAGGTGATGTGTATCTCCGATGTTACTCGCGGTAATGGCATTACCCATCGGGTTGGTAAACGTTTCTGCGTGAAGTCCGTGTATATATTAGGGAAGATCTGGATGGACGATAACATCAAGCTCAAGAACCACACTAACAGCGTTATGTTCTGGTTAGTTAGGGATAGGAGGCCCAGCGGAACGGCTATGGATTTTGGTCACCTCTTCAACATGTTTGACAATGAGCCTAGTACTGCCACTGTGAAGAACGATCTTAGAGATCGTTTCCAAGTGCTGCACAGGTTTCATGCGAAGGTGACTGGTGGTCAGTATGCAAGCAATGAGCAGACGTTGGTGAAGCGTTTTCGGCGGGTGAATCAGCGTGTAACATATAATAATCAGGAGGCAGCTCGGTATGAAAACCATACGGAGAACGCCTTAATGTTGTACATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACTCTTAAGATCCGGATCTATTTTTATGATTCGGTGTTAAATTAA
Protein Sequence MPKRDAPWRLMSGTPKVSRSSNYVPPDGLGRKFDKSSAWANRPMYRKPRIYRTVRSADVPRGCEGPCKIQSFEQRHDISHTGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDDNIKLKNHTNSVMFWLVRDRRPSGTAMDFGHLFNMFDNEPSTATVKNDLRDRFQVLHRFHAKVTGGQYASNEQTLVKRFRRVNQRVTYNNQEAARYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVLN

NCBI Accession YP_006429.1
Location 936-1334
Gene Name AL3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACCGGGGAGAGCATCACTGTGGAACAGGCAGAGAATTCCGTTTTTATCTGGGAGGTACCAAATCCCCTCTATTTCACGATAATCAAAACAGAGGACCCAATTTACACCAACAGCAGGATTTACCACATCCAAATAAGGTTCAACCACAACCTCAGGAAGGCGTTGAGTCTACACAAAGCGTACCTCAACTACCAAATCTGGACGACATCAGTTCGAGCTTCTGGGACGACTTACTTAAGTAGATTTAAATATTTAGTCTTATTGTATTTAGATAGATTAGGCGTTATTTGCATTAATAATGTAATTAGAGCTGTTCGCTTCGCAACAGACAGATGGTATGTAAATCATGTACTTGAGAATTATTCAATAAAATTCAAAATTTATTAA
Protein Sequence MDSRTGESITVEQAENSVFIWEVPNPLYFTIIKTEDPIYTNSRIYHIQIRFNHNLRKALSLHKAYLNYQIWTTSVRASGTTYLSRFKYLVLLYLDRLGVICINNVIRAVRFATDRWYVNHVLENYSIKFKIY

NCBI Accession YP_006430.1
Location 1081-1467
Gene Name AL2
Protein Name transcription activator protein
Coding Region ATGCAAAATTCATCTTCCTCAACTCCACCCTCTATCAAGCCTAAGCACAAGATTGCAAAGTCCAGGATTCGTCGCAAGAGAATAGACCTAAACTGTGGCTGCTCATTCTACCAACACATCGACTGCGCCAACAATGGATTCACGCACCGGGGAGAGCATCACTGTGGAACAGGCAGAGAATTCCGTTTTTATCTGGGAGGTACCAAATCCCCTCTATTTCACGATAATCAAAACAGAGGACCCAATTTACACCAACAGCAGGATTTACCACATCCAAATAAGGTTCAACCACAACCTCAGGAAGGCGTTGAGTCTACACAAAGCGTACCTCAACTACCAAATCTGGACGACATCAGTTCGAGCTTCTGGGACGACTTACTTAAGTAG
Protein Sequence MQNSSSSTPPSIKPKHKIAKSRIRRKRIDLNCGCSFYQHIDCANNGFTHRGEHHCGTGREFRFYLGGTKSPLFHDNQNRGPNLHQQQDLPHPNKVQPQPQEGVESTQSVPQLPNLDDISSSFWDDLLK

NCBI Accession YP_006431.1
Location 1424-2464
Gene Name AL1
Protein Name replication protein
Coding Region ATGCCACCACCTAAACGTTTTCGCCTTCAAGCAAAAAATATCTTCCTAACATACCCCCAATGTCCTCTTACAAAAGAAGAAGCCCTAGATCAACTACTGTCCATACAACTTCCTTCTAACAAAAAATACATCAAGATCTGCAGAGAACTGCACGAAAATGGGGAACATCATCTCCACGTGCTTATGCAGTTCGAAGGGAAAATCCAAATCACGAATCAAAGACAGTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTACATCGACAAGGATGGAGATACATTGGAATGGGGAGAATTCCAGATCGACGGAAGATCTGCTAGAGGAGGTCAGCAAACAGCTAACGACGCTGCCGCAGAGGCCCTAAATGCGTCCTCGAAAGAAGAAGCCATGCGAATTATTAAAGAGAAGCTCCCCAAAGAGTTTCTTTTTCAATATCACAACCTGTCTAGTAACTTAGACAGGATATTCGCTAAGGCTCCGGAACCATGGGTTCCTCCGTTTCCACTCTCCTCCTTCACGAACGTTCCGGACGAGATGCAAGAGTGGGCTGATGATTATTTTGGTAGGGGTGCCGCTGCGCGGCCGGAGAGACCTATTAGTATAATCATCGAGGGTGATTCGAGGACAGGAAAGACGATGTGGGCTCGTGCTTTAGGACCACATAATTATTTGAGTGGACACTTGGATTTCAATCCTAGGGTTTACTCAAATGATGTGGAGTACAACGTCATTGATGACGTCACTCCGCAATATTTAAAGATGAAACATTGGAAAGAGCTGATTGGGGCCCAAAAGGACTGGCAGTCCAACTGCAAATACGGGAAGCCAGTTCAAATTAAAGGTGGGATACCATCAATCGTGCTCTGCAATCCAGGAGAGGGAGCCAGCTATAAATGTTCCCTTGAAAAAGAGGAAAATGCAGCACTAAAAGCTTGGACCCTCCACAATGCAAAATTCATCTTCCTCAACTCCACCCTCTATCAAGCCTAA
Protein Sequence MPPPKRFRLQAKNIFLTYPQCPLTKEEALDQLLSIQLPSNKKYIKICRELHENGEHHLHVLMQFEGKIQITNQRQFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQTANDAAAEALNASSKEEAMRIIKEKLPKEFLFQYHNLSSNLDRIFAKAPEPWVPPFPLSSFTNVPDEMQEWADDYFGRGAAARPERPISIIIEGDSRTGKTMWARALGPHNYLSGHLDFNPRVYSNDVEYNVIDDVTPQYLKMKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKCSLEKEENAALKAWTLHNAKFIFLNSTLYQA

NCBI Accession YP_006432.1
Location 2050-2307
Gene Name AL4
Protein Name AL4 protein
Coding Region ATGGGGAACATCATCTCCACGTGCTTATGCAGTTCGAAGGGAAAATCCAAATCACGAATCAAAGACAGTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTACATCGACAAGGATGGAGATACATTGGAATGGGGAGAATTCCAGATCGACGGAAGATCTGCTAGAGGAGGTCAGCAAACAGCTAACGACGCTGCCGCAGAGGCCCTAA
Protein Sequence MGNIISTCLCSSKGKSKSRIKDSSTWYPQPGQHISIRTFRELNQAPTSSPTSTRMEIHWNGENSRSTEDLLEEVSKQLTTLPQRP

References More References in PubMed

1

A New Strain of Tomato chino La Paz virus Associated with a Leaf Curl Disease of Tomato in Baja California Sur, Mexico.

Holguín-Peña RJ, et al.  Plant Dis. 2006 Jul;90(7):973. doi: 10.1094/PD-90-0973B.

PMID: 30781049

2

First Report of Tomato yellow leaf curl virus Co-infecting Pepper with Tomato chino La Paz virus in Baja California Sur, Mexico.

Cardenas-Conejo Y, et al.  Plant Dis. 2010 Oct;94(10):1266. doi: 10.1094/PDIS-06-10-0444.

PMID: 30743592