Tomato bright yellow mottle virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_002823865.1
Isolate Brazil
Release date 2018/8/25
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_038468
ACCGGGGATGGCCGCGCAATTTTTTTATGCCCCCGACCCGCTCCCGCAATTGCGCCGCACTGTCGGCCATTATTGGTGGTCCCTTTCGGATAAAGACAAATTTGACTGACCAATGAAATTCGGGCCTGGATGCCAATTTATTTTGAAATACTTGGGCGCTAAGTTGCTATAAAAAAGGCCCATTATTCCAAGGCCCAACAGGCATTAATTCGAAAATGCCGAAGCGGTATCCCCCATTCCGGACAACGGCGGGAATTTCCAAGATTTCCCGCTCTTCGAATATGTCTCCTCGTGGAGGTATCCGGCCCAAATTCGACAAGGCCGCTGAGTGGGTTAACAGGCCCATGTACAGGAAGCCCAGGATCTACCGCACGTTGCGAAGCCCAGACATCCCGAGGGGTTGTGAAGGCCCTTGCAAGGTCCAATCGTTTGAGCAGCGTCATGACGTTTCGCACGTGGGGAAGGTGTTGTGTATTTCTGATGTGACACGGGGTAATGGTATTACTCACCGTGTCGGTAAACGTTTTTGTGTTAAGTCCGTCTATATACTAGGGAAGGTTTGGATGGACGATAATATTAAGCTGAAGAACCATACGAATAGCGTATTGTTCTGGTTAGTTAGGGATAGGAGGCCGTATGGTACCCCTATGGACTTCGGCCAGGTTTTTAATATGTATGATAACGAGCCCAGTACTGCCACCGTGAAGAACGATCTCCGGGATCGTATCCAAGTTATGCACAGGTTCTCCGCGAAGGTGACAGGTGGACAGTACGCCAGCAACGAGCAGGCCGTGGTGCGACGTTTCTGGAAGGTGTACAACCACGTTGTGTACAACCACCAAGAGGCCGCGAAGTACGAAATCCACACGGAGAACGCCCTGTTATTGTACATGGCATGTACTCATGCCTCTAACCCTGTATATGCCACCCTCAAGATTCGGATCTATTTTTACGATTCGATCTTAAATTAATAAATGTTGAATTTTATTGAATGATCCTCGAGTACATGAGTTAACATACGTCCTGTCTGTTGCGAATTGAACAGATCGAATAACATAACTAAATTGAAATAACYCCAAATTTAAGAAAGTACATATTGACCAAGAATAAAAATAAATAAAAATATGTCGTCCCAGAAGCCGTAAGGGAAGTCGTCCAGACTTGGAAGTTGAGGTACGCCTTGTGGAGATCCAACGCTCTCCTGAGGTTGTGGTTGAACCGTATCTGGATGTGGTACACCGTCGTGTTGGCGTGGAGTAAAATCTCCACGTTGGTGATCTTGAAATATAGGGGATTTTGCACCTCCCAGGTATACACGCCATTCTCCGCTTGACGTCGCGTGATGCGTTCCCCTGTGCGTGAATCCATGTCCTCTGCAGTGAATGTGCAGGTAGATTGAGCATCCCGCACTAAACTAAAATTCGTCGTCTCCTGATTGCCCTCTTCTTCTTGGCAATTCTGTGCTGTGGTTTGATAGAGGGGGGAGTTGAGAAAGACGAATTTCATTGTGGAGTGTCCAGTTCTTGAGTGACAAATTCTCCTCTTTGTCGAGGAACTCTTTATAACTGGCACCCTCTCCTGGATTGCAAAGCACGATTGAGGGTATCCCACCTTTAATTTGAACCGGCTTTCCGTATTTACAATTTGACTGCCAGTCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTCATCTTTAAGTAGTGCGGAGGGACGTCATCAATGACGTTATAATCAACTTCATTTGAATAAACCCTAGCATTGAAATCCAGGTGTCCACTCAAATAATTGTGGGACCCCAAAGCACGTGCCCACATCGTCTTGCCCGTTCTTGAATCACCCTCCACGATGATGGATACCGGTCTGAGACTATTATGAAAATCTGGCCGCGCAGCGGAAAGACGACCAAAATAATCATCCGCCCACTCTTGCATCTCGTCCGGAACGTTAGTGAAAGAGGAGAGTGGAAACGGAGGAGTCCAAGGCTCCGGAGATTTGGCGAATATCTTTTGAATATTCGCATTGATGTTATGATGTTGAACGATGAACGCCTTGGGATCTCCTGCCCGGATAATTGCAAGAGCCTCTGATGCAGATGTGGCATTGATTGCGTTGTGATAGACGTCGTCTTTATTTGTCTTAGTTCCGCCAGAAATTCTGTATTGTCCGGATTCACAATAATCACCCTCTCTGGTGATGTAATTCTTGACGGCGTTGGCGTCTTTGGCTGCCTGGATGTTTGGGTGAAAATTGGCAGACCGTCTTGGGTGAGTAAGGTCGAAAAATCTAGCATCCTTGATGTTGACTTTCCGGATATTGTATGAGACAGGGGAGGTGAGGATGCCCATCTGGTGTTCCTCTCTGGCGACCCCGATGTATGTGGGTTTGACGACTGTCCCAGTGAGGAGTTGAAGCATTTGAAGCACCTCATGTTTTTCTATATCGCACTGCGGGTACGTGAGGAAGATATTCCTTGCCTGCAGCCTAAATGTATTAGGTTGTCGTGGCATTTTTGTAAATATGTGCCAGGACTCCAGGGAGCTCTCCCAACTTCTGTGATATTTGCTGGAGTCCTGGAGTCCCATTTATACTAAAAGCCTCTTGGGACTCCAAGGGCAAAAGCGGCCATCCTATAATATT

Gene Information

NCBI Accession YP_009506517.1
Location 216-971
Protein Name capsid protein
Coding Region ATGCCGAAGCGGTATCCCCCATTCCGGACAACGGCGGGAATTTCCAAGATTTCCCGCTCTTCGAATATGTCTCCTCGTGGAGGTATCCGGCCCAAATTCGACAAGGCCGCTGAGTGGGTTAACAGGCCCATGTACAGGAAGCCCAGGATCTACCGCACGTTGCGAAGCCCAGACATCCCGAGGGGTTGTGAAGGCCCTTGCAAGGTCCAATCGTTTGAGCAGCGTCATGACGTTTCGCACGTGGGGAAGGTGTTGTGTATTTCTGATGTGACACGGGGTAATGGTATTACTCACCGTGTCGGTAAACGTTTTTGTGTTAAGTCCGTCTATATACTAGGGAAGGTTTGGATGGACGATAATATTAAGCTGAAGAACCATACGAATAGCGTATTGTTCTGGTTAGTTAGGGATAGGAGGCCGTATGGTACCCCTATGGACTTCGGCCAGGTTTTTAATATGTATGATAACGAGCCCAGTACTGCCACCGTGAAGAACGATCTCCGGGATCGTATCCAAGTTATGCACAGGTTCTCCGCGAAGGTGACAGGTGGACAGTACGCCAGCAACGAGCAGGCCGTGGTGCGACGTTTCTGGAAGGTGTACAACCACGTTGTGTACAACCACCAAGAGGCCGCGAAGTACGAAATCCACACGGAGAACGCCCTGTTATTGTACATGGCATGTACTCATGCCTCTAACCCTGTATATGCCACCCTCAAGATTCGGATCTATTTTTACGATTCGATCTTAAATTAA
Protein Sequence MPKRYPPFRTTAGISKISRSSNMSPRGGIRPKFDKAAEWVNRPMYRKPRIYRTLRSPDIPRGCEGPCKVQSFEQRHDVSHVGKVLCISDVTRGNGITHRVGKRFCVKSVYILGKVWMDDNIKLKNHTNSVLFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATVKNDLRDRIQVMHRFSAKVTGGQYASNEQAVVRRFWKVYNHVVYNHQEAAKYEIHTENALLLYMACTHASNPVYATLKIRIYFYDSILN

NCBI Accession YP_009506518.1
Location 963-1403
Protein Name AL3
Coding Region ATGCTCAATCTACCTGCACATTCACTGCAGAGGACATGGATTCACGCACAGGGGAACGCATCACGCGACGTCAAGCGGAGAATGGCGTGTATACCTGGGAGGTGCAAAATCCCCTATATTTCAAGATCACCAACGTGGAGATTTTACTCCACGCCAACACGACGGTGTACCACATCCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGGATCTCCACAAGGCGTACCTCAACTTCCAAGTCTGGACGACTTCCCTTACGGCTTCTGGGACGACATATTTTTATTTATTTTTATTCTTGGTCAATATGTACTTTCTTAAATTTGGRGTTATTTCAATTTAGTTATGTTATTCGATCTGTTCAATTCGCAACAGACAGGACGTATGTTAACTCATGTACTCGAGGATCATTCAATAAAATTCAACATTTATTAATTTAA
Protein Sequence MLNLPAHSLQRTWIHAQGNASRDVKRRMACIPGRCKIPYISRSPTWRFYSTPTRRCTTSRYGSTTTSGERWISTRRTSTSKSGRLPLRLLGRHIFIYFYSWSICTFLNLXLFQFSYVIRSVQFATDRTYVNSCTRGSFNKIQHLLI

NCBI Accession YP_009506519.1
Location 1060-1506
Protein Name AL2
Coding Region ATGAAATTCGTCTTTCTCAACTCCCCCCTCTATCAAACCACAGCACAGAATTGCCAAGAAGAAGAGGGCAATCAGGAGACGACGAATTTTAGTTTAGTGCGGGATGCTCAATCTACCTGCACATTCACTGCAGAGGACATGGATTCACGCACAGGGGAACGCATCACGCGACGTCAAGCGGAGAATGGCGTGTATACCTGGGAGGTGCAAAATCCCCTATATTTCAAGATCACCAACGTGGAGATTTTACTCCACGCCAACACGACGGTGTACCACATCCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGGATCTCCACAAGGCGTACCTCAACTTCCAAGTCTGGACGACTTCCCTTACGGCTTCTGGGACGACATATTTTTATTTATTTTTATTCTTGGTCAATATGTACTTTCTTAAATTTGGRGTTATTTCAATTTAG
Protein Sequence MKFVFLNSPLYQTTAQNCQEEEGNQETTNFSLVRDAQSTCTFTAEDMDSRTGERITRRQAENGVYTWEVQNPLYFKITNVEILLHANTTVYHIQIRFNHNLRRALDLHKAYLNFQVWTTSLTASGTTYFYLFLFLVNMYFLKFGVISI

NCBI Accession YP_009506520.1
Location 1415-2584
Protein Name AL1
Coding Region ATGGGACTCCAGGACTCCAGCAAATATCACAGAAGTTGGGAGAGCTCCCTGGAGTCCTGGCACATATTTACAAAAATGCCACGACAACCTAATACATTTAGGCTGCAGGCAAGGAATATCTTCCTCACGTACCCGCAGTGCGATATAGAAAAACATGAGGTGCTTCAAATGCTTCAACTCCTCACTGGGACAGTCGTCAAACCCACATACATCGGGGTCGCCAGAGAGGAACACCAGATGGGCATCCTCACCTCCCCTGTCTCATACAATATCCGGAAAGTCAACATCAAGGATGCTAGATTTTTCGACCTTACTCACCCAAGACGGTCTGCCAATTTTCACCCAAACATCCAGGCAGCCAAAGACGCCAACGCCGTCAAGAATTACATCACCAGAGAGGGTGATTATTGTGAATCCGGACAATACAGAATTTCTGGCGGAACTAAGACAAATAAAGACGACGTCTATCACAACGCAATCAATGCCACATCTGCATCAGAGGCTCTTGCAATTATCCGGGCAGGAGATCCCAAGGCGTTCATCGTTCAACATCATAACATCAATGCGAATATTCAAAAGATATTCGCCAAATCTCCGGAGCCTTGGACTCCTCCGTTTCCACTCTCCTCTTTCACTAACGTTCCGGACGAGATGCAAGAGTGGGCGGATGATTATTTTGGTCGTCTTTCCGCTGCGCGGCCAGATTTTCATAATAGTCTCAGACCGGTATCCATCATCGTGGAGGGTGATTCAAGAACGGGCAAGACGATGTGGGCACGTGCTTTGGGGTCCCACAATTATTTGAGTGGACACCTGGATTTCAATGCTAGGGTTTATTCAAATGAAGTTGATTATAACGTCATTGATGACGTCCCTCCGCACTACTTAAAGATGAAGCACTGGAAAGAATTGATTGGGGCCCAAAGGGACTGGCAGTCAAATTGTAAATACGGAAAGCCGGTTCAAATTAAAGGTGGGATACCCTCAATCGTGCTTTGCAATCCAGGAGAGGGTGCCAGTTATAAAGAGTTCCTCGACAAAGAGGAGAATTTGTCACTCAAGAACTGGACACTCCACAATGAAATTCGTCTTTCTCAACTCCCCCCTCTATCAAACCACAGCACAGAATTGCCAAGAAGAAGAGGGCAATCAGGAGACGACGAATTTTAG
Protein Sequence MGLQDSSKYHRSWESSLESWHIFTKMPRQPNTFRLQARNIFLTYPQCDIEKHEVLQMLQLLTGTVVKPTYIGVAREEHQMGILTSPVSYNIRKVNIKDARFFDLTHPRRSANFHPNIQAAKDANAVKNYITREGDYCESGQYRISGGTKTNKDDVYHNAINATSASEALAIIRAGDPKAFIVQHHNINANIQKIFAKSPEPWTPPFPLSSFTNVPDEMQEWADDYFGRLSAARPDFHNSLRPVSIIVEGDSRTGKTMWARALGSHNYLSGHLDFNARVYSNEVDYNVIDDVPPHYLKMKHWKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKEFLDKEENLSLKNWTLHNEIRLSQLPPLSNHSTELPRRRGQSGDDEF

References More References in PubMed

1

Complete genome sequence of a novel bipartite begomovirus infecting the legume weed Macroptilium erythroloma.

Batista JG, et al.  Arch Virol. 2022 Jul;167(7):1597-1602. doi: 10.1007/s00705-022-05410-0. Epub 2022 May 14.

PMID: 35562613
2

Macroptilium yellow mosaic virus, a New Begomovirus Infecting Macroptilium lathyroides in Cuba.

Ramos PL, et al.  Plant Dis. 2002 Sep;86(9):1049. doi: 10.1094/PDIS.2002.86.9.1049B.

PMID: 30818538
3

First Report of Artichoke yellow ringspot virus in Globe Artichoke in Turkey.

Paylan IC, et al.  Plant Dis. 2013 Oct;97(10):1388. doi: 10.1094/PDIS-04-13-0423-PDN.

PMID: 30722161
4

First Report of Tomato ringspot virus in Butterfly Bush (Buddleia davidii).

Hughes PL, et al.  Plant Dis. 2003 Jan;87(1):102. doi: 10.1094/PDIS.2003.87.1.102B.

PMID: 30812689
5

First Report of an Isolate of Pelargonium zonate spot virus in Commercial Glasshouse Tomato Crops in Southeastern France.

Gebre-Selassie K, et al.  Plant Dis. 2002 Sep;86(9):1052. doi: 10.1094/PDIS.2002.86.9.1052C.

PMID: 30818549
6

Detection of a Geminivirus Infecting Sweet Potato in the United States.

Lotrakul P, et al.  Plant Dis. 1998 Nov;82(11):1253-1257. doi: 10.1094/PDIS.1998.82.11.1253.

PMID: 30845415
7

Phenotypes and functional effects caused by various viral RNA silencing suppressors in transgenic Nicotiana benthamiana and N. tabacum.

Siddiqui SA, et al.  Mol Plant Microbe Interact. 2008 Feb;21(2):178-87. doi: 10.1094/MPMI-21-2-0178.

PMID: 18184062
8

First Report of Tobacco rattle virus Associated with Corky Ringspot in Potatoes Grown in North Dakota.

David N, et al.  Plant Dis. 2010 Jan;94(1):130. doi: 10.1094/PDIS-94-1-0130B.

PMID: 30754413