Tomato bright yellow mosaic virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_002823845.1
Isolate Brazil
Release date 2018/8/25
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_038467
ACCGGATGGCCGCGCGATTTTTTCCCCCCCTTCTTTTATTTGAATTAAAGTTAACTTTGATTTGGACCAATGATATTGCGTCTGACGAGGTTAGATATTGTTGAACAACTTGGCGACCAAGTTTTAACGGCTATAAATAGAACGTACGACTGAGATTATCTTTAATTCAAATGTCTAAGCGAGGGGCCACATGGCGCTCTCTGGAGGGGATCTCAAAGGCCCGTCGTTCTATCAATTTTTCTCCTCGTGGAGGTAATGGGCCTAGGTCCAATAAGGCCGCTGAATGGGTTAACAGGCCTATGTACAGGAAGCCCAGGATATATCGGATGTATAGAACCCCCGATGTTCCAAGAGGCTGTGAAGGCCCATGTAAAGTCCAGTCGTTCGAGCAGCGTCATGATATTTCCCATSTTGGTAAGGTGATATGTGTCTCGGACGTGACAAGGGGTAATGGTATTACCCACCGTGTAGGAAAACGTTTTTGTGTTAAGTCTGTGTATATTTTAGGCAAGGTATGGATGGACGAGAATATTAAGTTGAAGAACCACACCAACAGTGTTATGTTCTGGCTGGTCAGAGACCGTAGACCGTATGGTACACCTATGGACTTTGGCCAAGTTTTTAACATGTTTGACAACGAGCCTAGTACCGCAACTGTTAAGAACGATCTTCGTGACCGTTACCAAGTTATGCACAAGTTTTATGCCAAGGTGACTGGTGGACAGTATGCAAGCAACGAGCAGGCTATTGTTAAGCGTTTTTGGAGGGTGAACATTCATGTGGTATACAACCATCAAGAGGCTGGGAAGTACGAGAATCATACGGAGAACGCGTTATTATTGTATATGGCATGTACATATGCGTCGAATCCTGTGTATGCAACCTTAAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAATAAAGTTTGAATTTTATTTCATGATTCTCAAGTACATTGTGAATATAGTGTTTGTCCGTTGCGAAACGAACTGCTCTAATTACATTGTTAATTGAAATGACGCCTATATTGTCTAAATAAGCTAAAACTAACAATCTAAACCTATTTAAATATCTCGTCCCAGAAGCTGTAATCGATGTCGTCCAGATGTGGAAATTAAGGTAGGCCTTGTGGAGACCCAACGCTTTCCTGGTGTTGTGGTTGAACCGTATCTGGAGGTGATATATCCGGGTCGTTGTGTATGGTGGATCCTCCACGTCGATGATCTTGAAATAAAGGGGATTTGGAATTTCCCAGATATGTACGCCATTCTGTGCCTGAGGTGCAGTGATGTGTTCCCCTGTGCGTGAATCCATATCCCGTGCATTAATGTGAAGATAAATTGAACAGCCGCACTCAAAGTCAATGCGTCGTCTTCGGATTGCTCGCCTTTTGGATACTTGAGCTTTTCTTTTAGCAGCTCTGTGTTGGACTTTGATAGAGGGGGGAGTTGATAAAGACGAATTTCGCTATGTGGAGCGTCCAATTTTTGAGAGCTGCGTTTTCCTCTTTGTCGAGGAAACATTTATAGCTGGATCCCTCTCCTGGATTGCAGAGCACGATTGAGGGGATCCCTCCTTTAATTTGAACTGGACGACCATATTTGCAATTGGATTGCCAGTCTTTTTGGGCCCCAATGAGTTCTTTCCAGTGTTTAATTTTAAAATATTTGGGGTCCACGTCGTCAATAATGTTGTACTGGGCCTCATTTGAATAGCATTTTGAATTAAAGTCGAGATGACCACTAAGATAATTGTGGACCCCCAAAGCACGTGCCCACATCGTCTTTCCCGTTCTGGAATCACCCTCAATGATAATACTGATAGGTCTCTCCGGCCGCGCAGCGGAACTTCTTCCGAAATATTCATCTGCCCACTGTTGCATCTCCTGTGGAACGTTAGTGAATGAGGAGAGTTGAAACGGAGGAACCCATGGTTCTGGAGCCTTAACGAAGATCCGTTCAAAATTTGAGCGGATGTTATGATGTTGAACGACGAAATCTTTGGGTTGTTCCTCCCTAAATATATTGAGGGCCTCCATGACTGATCCTGCGTTGAGGACCTTGGCATACGTGTCGTTGGCAGACTGCTGACCTCCTCTAGCTGATCTGCCATCGATTTGGAACACTCCATGATCAATGAAATCTCCGTCTTTTTCCACGTATGTTTTAACATCTGAGCTGCTCTTAGCTGCCTGTATGTTAGGATGGAAATGTGCTGACCTGGTTGGAGATGTAAGGTCGAACAATCTCTGGTTGGTACATTGGAATTTCCCTTCGAATTGGATGAGGACATGCAGATGAGGTTGCCCATCTTCGTGTAATTCCCTGGCAACACGAACGAATAATTTATTGACTGGTATTGTAAAGGCAAATAGTTGGGAAAGTGCTTCTTCCTTCGATAGAGAGCACTTAGGATAAGTGAGGAAATAGTTTTTGGCATTTAAACGAAATCGTTTTGGGAGTGGCATATTTGTAAATAAGAGCTTGTACACCGATTGGGAGCTCTCAAAACTTGCTGAATGAATCGGTGTATTGGTGTACAATTTATACTAGAACCCCCAATAGAACTCCCATTGTGGTCCCCAACACGTGGCGGCCATCCGTTATAATATT

Gene Information

NCBI Accession YP_009506513.1
Location 171-926
Protein Name capsid protein
Coding Region ATGTCTAAGCGAGGGGCCACATGGCGCTCTCTGGAGGGGATCTCAAAGGCCCGTCGTTCTATCAATTTTTCTCCTCGTGGAGGTAATGGGCCTAGGTCCAATAAGGCCGCTGAATGGGTTAACAGGCCTATGTACAGGAAGCCCAGGATATATCGGATGTATAGAACCCCCGATGTTCCAAGAGGCTGTGAAGGCCCATGTAAAGTCCAGTCGTTCGAGCAGCGTCATGATATTTCCCATSTTGGTAAGGTGATATGTGTCTCGGACGTGACAAGGGGTAATGGTATTACCCACCGTGTAGGAAAACGTTTTTGTGTTAAGTCTGTGTATATTTTAGGCAAGGTATGGATGGACGAGAATATTAAGTTGAAGAACCACACCAACAGTGTTATGTTCTGGCTGGTCAGAGACCGTAGACCGTATGGTACACCTATGGACTTTGGCCAAGTTTTTAACATGTTTGACAACGAGCCTAGTACCGCAACTGTTAAGAACGATCTTCGTGACCGTTACCAAGTTATGCACAAGTTTTATGCCAAGGTGACTGGTGGACAGTATGCAAGCAACGAGCAGGCTATTGTTAAGCGTTTTTGGAGGGTGAACATTCATGTGGTATACAACCATCAAGAGGCTGGGAAGTACGAGAATCATACGGAGAACGCGTTATTATTGTATATGGCATGTACATATGCGTCGAATCCTGTGTATGCAACCTTAAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAA
Protein Sequence MSKRGATWRSLEGISKARRSINFSPRGGNGPRSNKAAEWVNRPMYRKPRIYRMYRTPDVPRGCEGPCKVQSFEQRHDISHXGKVICVSDVTRGNGITHRVGKRFCVKSVYILGKVWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQAIVKRFWRVNIHVVYNHQEAGKYENHTENALLLYMACTYASNPVYATLKIRIYFYDSITN

NCBI Accession YP_009506514.1
Location 923-1321
Protein Name AL3
Coding Region ATGGATTCACGCACAGGGGAACACATCACTGCACCTCAGGCACAGAATGGCGTACATATCTGGGAAATTCCAAATCCCCTTTATTTCAAGATCATCGACGTGGAGGATCCACCATACACAACGACCCGGATATATCACCTCCAGATACGGTTCAACCACAACACCAGGAAAGCGTTGGGTCTCCACAAGGCCTACCTTAATTTCCACATCTGGACGACATCGATTACAGCTTCTGGGACGAGATATTTAAATAGGTTTAGATTGTTAGTTTTAGCTTATTTAGACAATATAGGCGTCATTTCAATTAACAATGTAATTAGAGCAGTTCGTTTCGCAACGGACAAACACTATATTCACAATGTACTTGAGAATCATGAAATAAAATTCAAACTTTATTAA
Protein Sequence MDSRTGEHITAPQAQNGVHIWEIPNPLYFKIIDVEDPPYTTTRIYHLQIRFNHNTRKALGLHKAYLNFHIWTTSITASGTRYLNRFRLLVLAYLDNIGVISINNVIRAVRFATDKHYIHNVLENHEIKFKLY

NCBI Accession YP_009506515.1
Location 1072-1530
Protein Name AL2
Coding Region ATGTTTCCTCGACAAAGAGGAAAACGCAGCTCTCAAAAATTGGACGCTCCACATAGCGAAATTCGTCTTTATCAACTCCCCCCTCTATCAAAGTCCAACACAGAGCTGCTAAAAGAAAAGCTCAAGTATCCAAAAGGCGAGCAATCCGAAGACGACGCATTGACTTTGAGTGCGGCTGTTCAATTTATCTTCACATTAATGCACGGGATATGGATTCACGCACAGGGGAACACATCACTGCACCTCAGGCACAGAATGGCGTACATATCTGGGAAATTCCAAATCCCCTTTATTTCAAGATCATCGACGTGGAGGATCCACCATACACAACGACCCGGATATATCACCTCCAGATACGGTTCAACCACAACACCAGGAAAGCGTTGGGTCTCCACAAGGCCTACCTTAATTTCCACATCTGGACGACATCGATTACAGCTTCTGGGACGAGATATTTAA
Protein Sequence MFPRQRGKRSSQKLDAPHSEIRLYQLPPLSKSNTELLKEKLKYPKGEQSEDDALTLSAAVQFIFTLMHGIWIHAQGNTSLHLRHRMAYISGKFQIPFISRSSTWRIHHTQRPGYITSRYGSTTTPGKRWVSTRPTLISTSGRHRLQLLGRDI

NCBI Accession YP_009506516.1
Location 1475-2446
Protein Name AL1
Coding Region ATGCCAAAAACTATTTCCTCACTTATCCTAAGTGCTCTCTATCGAAGGAAGAAGCACTTTCCCAACTATTTGCCTTTACAATACCAGTCAATAAATTATTCGTTCGTGTTGCCAGGGAATTACACGAAGATGGGCAACCTCATCTGCATGTCCTCATCCAATTCGAAGGGAAATTCCAATGTACCAACCAGAGATTGTTCGACCTTACATCTCCAACCAGGTCAGCACATTTCCATCCTAACATACAGGCAGCTAAGAGCAGCTCAGATGTTAAAACATACGTGGAAAAAGACGGAGATTTCATTGATCATGGAGTGTTCCAAATCGATGGCAGATCAGCTAGAGGAGGTCAGCAGTCTGCCAACGACACGTATGCCAAGGTCCTCAACGCAGGATCAGTCATGGAGGCCCTCAATATATTTAGGGAGGAACAACCCAAAGATTTCGTCGTTCAACATCATAACATCCGCTCAAATTTTGAACGGATCTTCGTTAAGGCTCCAGAACCATGGGTTCCTCCGTTTCAACTCTCCTCATTCACTAACGTTCCACAGGAGATGCAACAGTGGGCAGATGAATATTTCGGAAGAAGTTCCGCTGCGCGGCCGGAGAGACCTATCAGTATTATCATTGAGGGTGATTCCAGAACGGGAAAGACGATGTGGGCACGTGCTTTGGGGGTCCACAATTATCTTAGTGGTCATCTCGACTTTAATTCAAAATGCTATTCAAATGAGGCCCAGTACAACATTATTGACGACGTGGACCCCAAATATTTTAAAATTAAACACTGGAAAGAACTCATTGGGGCCCAAAAAGACTGGCAATCCAATTGCAAATATGGTCGTCCAGTTCAAATTAAAGGAGGGATCCCCTCAATCGTGCTCTGCAATCCAGGAGAGGGATCCAGCTATAAATGTTTCCTCGACAAAGAGGAAAACGCAGCTCTCAAAAATTGGACGCTCCACATAG
Protein Sequence MPKTISSLILSALYRRKKHFPNYLPLQYQSINYSFVLPGNYTKMGNLICMSSSNSKGNSNVPTRDCSTLHLQPGQHISILTYRQLRAAQMLKHTWKKTEISLIMECSKSMADQLEEVSSLPTTRMPRSSTQDQSWRPSIYLGRNNPKISSFNIITSAQILNGSSLRLQNHGFLRFNSPHSLTFHRRCNSGQMNISEEVPLRGRRDLSVLSLRVIPERERRCGHVLWGSTIILVVISTLIQNAIQMRPSTTLLTTWTPNILKLNTGKNSLGPKKTGNPIANMVVQFKLKEGSPQSCSAIQERDPAINVSSTKRKTQLSKIGRST

References More References in PubMed

1

Host range and genetic diversity of croton yellow vein mosaic virus, a weed-infecting monopartite begomovirus causing leaf curl disease in tomato.

Pramesh D, et al.  Arch Virol. 2013 Mar;158(3):531-42. doi: 10.1007/s00705-012-1511-8. Epub 2012 Oct 25.

PMID: 23096697

2

Macroptilium yellow mosaic virus, a New Begomovirus Infecting Macroptilium lathyroides in Cuba.

Ramos PL, et al.  Plant Dis. 2002 Sep;86(9):1049. doi: 10.1094/PDIS.2002.86.9.1049B.

PMID: 30818538

3

Minimal genomic variability in Merremia mosaic virus isolates endemic in Merremia spp and cultivated tomato in Puerto Rico.

Idris AM, et al.  Virusdisease. 2019 Mar;30(1):84-94. doi: 10.1007/s13337-017-0412-6. Epub 2018 Feb 23.

PMID: 31143835

4

First Report of Pepino mosaic virus in Canada and the United States.

French CJ, et al.  Plant Dis. 2001 Oct;85(10):1121. doi: 10.1094/PDIS.2001.85.10.1121B.

PMID: 30823296

5

Araujia sericifera New Host of Alfalfa mosaic virus in Italy.

Parrella G, et al.  Plant Dis. 2013 Oct;97(10):1387. doi: 10.1094/PDIS-03-13-0300-PDN.

PMID: 30722152

6

Complete genome sequence of a novel bipartite begomovirus infecting the legume weed Macroptilium erythroloma.

Batista JG, et al.  Arch Virol. 2022 Jul;167(7):1597-1602. doi: 10.1007/s00705-022-05410-0. Epub 2022 May 14.

PMID: 35562613

7

First Report of Artichoke yellow ringspot virus in Globe Artichoke in Turkey.

Paylan IC, et al.  Plant Dis. 2013 Oct;97(10):1388. doi: 10.1094/PDIS-04-13-0423-PDN.

PMID: 30722161

8

Characterization of Two Aggressive PepMV Isolates Useful in Breeding Programs.

Alcaide C, et al.  Viruses. 2023 Nov 8;15(11):2230. doi: 10.3390/v15112230.

PMID: 38005907

9

Symptom production on tobacco and tomato is determined by two distinct domains of the satellite RNA of cucumber mosaic virus (strain Y).

Devic M, et al.  J Gen Virol. 1989 Oct;70 ( Pt 10):2765-74. doi: 10.1099/0022-1317-70-10-2765.

PMID: 2794979

10

Tropical soda apple mosaic virus Identified in Solanum capsicoides in Florida.

Adkins S, et al.  Plant Dis. 2007 Sep;91(9):1204. doi: 10.1094/PDIS-91-9-1204A.

PMID: 30780679