Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000892135.1 |
Isolate | Cuba |
Release date | 2015/2/22 |
Submitter | Fiallo-Olive,E., Rivera-Bustamante,R.F., Martinez-Zubiaur,Y., Moriones,E., Navas-Castillo,J. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_004564601.1 |
---|---|
Location | 164-919 |
Gene Name | AV1 |
Protein Name | coat protein |
Coding Region | ATGCCTAAGCGGGATGCCCCGTGGCGTTCTATGGCCGGGACCTCTAAGGTGTCCCGCAATGCCAACTATTCACCCCGTACAGCTATGGGCCCTAAATTTGATAAGGCCGCTGCTTGGGTTAATAGGCCCATGTACAGGAAGCCCAGGATTTATCGGACGTTGAGAAGCCCAGATGTTCCAAGAGGCTGTGAAGGGCCTTGCAAAGTCCAGTCTTATGAGCAGCGGCATGATATTTCACATGTTGGCAAGGTGATGTGTATTTCGGACGTGACACGTGGTAATGGTATTACCCATCGTGTTGGCAAGCGTTTTTGCGTGAAGTCCGTGTACATTTTGGGCAAGATATGGATGGACGAGAATATCAAGCTCAAGAACCATACCAACAGCGTCATGTTTTGGTTGGTCAGAGACAGGAGACCATATGGCACCCCTCAGGATTTTGGCCAAGTGTTCAACATGTTCGACAACGAGCCCAGTACTGCTACTGTGAAGAACGATCTTCGTGATCGTTATCAAGTCATGCACAAGTTCTACGCAAAGGTTACAGGTGGACAGTATGCGAGTAACGAGCAGGCGTTAGTGAAGCGTTTCTGGAAGGTGAACAATTACGTGGTGTACAACCACCAAGAAGCAGGCAAATACGAGAATCATACGGAGAACGCTTTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCCGTGTATGCGACATTGAAAATTCGGATCTATTTTTATGATTCGATATTAAATTAA |
Protein Sequence | MPKRDAPWRSMAGTSKVSRNANYSPRTAMGPKFDKAAAWVNRPMYRKPRIYRTLRSPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPQDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSILN |
NCBI Accession | YP_004564602.1 |
---|---|
Location | 916-1314 |
Gene Name | AC3 |
Protein Name | replication enhancement protein |
Coding Region | ATGGATTCACGCACCGGGGAGAGCATCACTGCGGCTCAGGCAGAGAATTCCGTTTTTATCTGGGAGACTCCAAATCCCCTTTATTTCAAGATACACCACGTAGAGAACCCGTTGTACACGAGAACCAGGATCTACCACATCGAAGTCCGGTTCAATTACAACCTTCGGAAAGCGTTGGGTCTCCACAAAGCCTTCTTCAATTTCCAAGTTTGGACGACTTCGATGACAGCTTCTGGGCAGAGATATTTAAGTAGATTCAAATTACTTGTAATGTCTTATTTAGATAGTTTAGGCGTTATTGGTATAAACAATGTAATTAGAGCTGTTCGTTTCGCAACAGACAAATCGTATGTAACTGATGTACTTGAGAATCATGAAATAAAATTCAAAATTTATTAA |
Protein Sequence | MDSRTGESITAAQAENSVFIWETPNPLYFKIHHVENPLYTRTRIYHIEVRFNYNLRKALGLHKAFFNFQVWTTSMTASGQRYLSRFKLLVMSYLDSLGVIGINNVIRAVRFATDKSYVTDVLENHEIKFKIY |
NCBI Accession | YP_004564603.1 |
---|---|
Location | 1061-1450 |
Gene Name | AC2 |
Protein Name | transactivator protein |
Coding Region | ATGCTAAATTCATCACCCTTGAAGCCCCCCTCTATCAAAGCACAGCACAGGATTGCTAAAAAAAGAGCTGTTCGTCGACGACGCATTGATTTGAACTGCGGGTGTTCTATCTTCCTCCACATCAACTGCGCAGATAATGGATTCACGCACCGGGGAGAGCATCACTGCGGCTCAGGCAGAGAATTCCGTTTTTATCTGGGAGACTCCAAATCCCCTTTATTTCAAGATACACCACGTAGAGAACCCGTTGTACACGAGAACCAGGATCTACCACATCGAAGTCCGGTTCAATTACAACCTTCGGAAAGCGTTGGGTCTCCACAAAGCCTTCTTCAATTTCCAAGTTTGGACGACTTCGATGACAGCTTCTGGGCAGAGATATTTAAGTAG |
Protein Sequence | MLNSSPLKPPSIKAQHRIAKKRAVRRRRIDLNCGCSIFLHINCADNGFTHRGEHHCGSGREFRFYLGDSKSPLFQDTPRREPVVHENQDLPHRSPVQLQPSESVGSPQSLLQFPSLDDFDDSFWAEIFK |
NCBI Accession | YP_004564604.1 |
---|---|
Location | 1392-2447 |
Gene Name | AC1 |
Protein Name | replication associated protein |
Coding Region | ATGCCATCAGTTAAACGTTTTAGAATAAATGCCAAAAACTATTTCATCACTTATCCCAAGTGCTCTCTCACCAAAGAAGACGCACTTTCCCAATTACAAAACCTAAACACACCCGTTAACAAGAAGTTTATCAAGGTGTGCAGAGAGCTTCACGAGAATGGGGAGCCTCATCTCCATGTGCTCATACAATTCGAAGGGAAATATACATGCACGAATAACAGATTCTTCGACCTGGTCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCTAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTGCAATGGGGAGATTTCCAGATCGACGGCAGAAGTGCTAGAGGAGGCTGCCAATCTACTAACGATACATATGCCAAGGCGTTAAATGCCTCTTCTGCAGAAGAGGCACTGATGATAATCAAAGAAGAGCAGCCTCAACATTTTTTCCTTCAACATCATAATTTGGTTGCCAATGCTCATCGGATTTTTCAGAAGGCTCCGGAACCATGGGTTCCTCCGTTTCAACTCTCCTCCTTTACTAACGTTCCAGACGAGATGAGTTCATGGGCCGATGAGTATTTTGGTCGGAGTTCCGCTGCGCGGCCGGAGAGACCTATTAGTATCATAATTGAAGGTGATTCTCGAACAGGCAAAACCATGTGGGCGCGTGCTTTAGGCCCACATAATTATTTGAGTGGTCACCTCGACTTCAATTCCAAGGTCTTCTCGAATGATGTGGAGTATAACGTCATTGATGACATTGCTCCGCATTATTTAAAGCTAAAGCACTGGAAAGAACTCATAGGGGCCCAAAGGGACTGGCAATCAAACTGTAAGTACGGCAAGCCAGTTCAAATTAAAGGTGGCATACCATCAATCGTGCTGTGCAATCCAGGAGAGGGGAGCAGTTATAAATGTTTCCTCGACAAAGAGGAAAATGCACCACTAAGAGCGTGGACTATTAAAAATGCTAAATTCATCACCCTTGAAGCCCCCCTCTATCAAAGCACAGCACAGGATTGCTAA |
Protein Sequence | MPSVKRFRINAKNYFITYPKCSLTKEDALSQLQNLNTPVNKKFIKVCRELHENGEPHLHVLIQFEGKYTCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLQWGDFQIDGRSARGGCQSTNDTYAKALNASSAEEALMIIKEEQPQHFFLQHHNLVANAHRIFQKAPEPWVPPFQLSSFTNVPDEMSSWADEYFGRSSAARPERPISIIIEGDSRTGKTMWARALGPHNYLSGHLDFNSKVFSNDVEYNVIDDIAPHYLKLKHWKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKCFLDKEENAPLRAWTIKNAKFITLEAPLYQSTAQDC |
NCBI Accession | YP_004564605.1 |
---|---|
Location | 2033-2290 |
Gene Name | AC4 |
Protein Name | AC4 protein |
Coding Region | ATGGGGAGCCTCATCTCCATGTGCTCATACAATTCGAAGGGAAATATACATGCACGAATAACAGATTCTTCGACCTGGTCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCTAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTGCAATGGGGAGATTTCCAGATCGACGGCAGAAGTGCTAGAGGAGGCTGCCAATCTACTAACGATACATATGCCAAGGCGTTAA |
Protein Sequence | MGSLISMCSYNSKGNIHARITDSSTWSPQPGQHISIRTYRELNLAPTSSPTSTRTEIHCNGEISRSTAEVLEEAANLLTIHMPRR |
NCBI Accession | YP_004564606.1 |
---|---|
Location | 371-1141 |
Gene Name | BV1 |
Protein Name | nuclear shuttling protein |
Coding Region | ATGTATCCTACGAAGTATAGGCGTGGGTCTTCATATAGTCAAAGACGATTTGTTGCACGTAATAATGGTTTAAAGCGTGCAACCTTTGTTAGACGCAATGATGGTAAACGTCGCAATGGCCCATTAAACAAGTCCTGTGACGAGCCCAAAATGTCGTCACAACGTATACATGAAAACCAATATGGCCCTGAATTTGTGATGTCTCATAATTCAGCAATATCAACGTTCATCAATTTTCCTGTGCTTGGTAAAACATCTCCTAACCGAAGCAGGTCGTATATTAAATTAAAGCGTTTATCATTTAAAGGAACCGTTAAGATTGAGCGTGTTCATGCCGATGTGAACATGGATGGACTAACTTCCAAGATAGAAGGTGTGTTCTCTCTTGTTATAGTTGTGGATCGCAAGCCTCATTTAAGCTCTTCTGGATGTTTGCACACATTCGATGAACTATTTGGTGCAAGAATCCACAGCCATGGGAACCTAGCCATTACACCCGCTTTAAAAGATCGTTATTATGTTCGACATGTTTTGAAGCGTGTATTGTCAGTGGAGAAAGATAGTGTAATGGTAGACCTGGAAGGATCGACACCGTTATCTACAAGGCGTTATAACTGTTGGTCCAATTTTAAGGATCTTGAACATGACTCATGTAACGGTGTTTATGCTAATATCAGCAAGAATGCCATTTTAGTTTATTATTGTTGGATGTCGGATGCAATTTCTAAGGCATCCACATTTGTATCTTATGACCTTGATTATGTGGGTTAA |
Protein Sequence | MYPTKYRRGSSYSQRRFVARNNGLKRATFVRRNDGKRRNGPLNKSCDEPKMSSQRIHENQYGPEFVMSHNSAISTFINFPVLGKTSPNRSRSYIKLKRLSFKGTVKIERVHADVNMDGLTSKIEGVFSLVIVVDRKPHLSSSGCLHTFDELFGARIHSHGNLAITPALKDRYYVRHVLKRVLSVEKDSVMVDLEGSTPLSTRRYNCWSNFKDLEHDSCNGVYANISKNAILVYYCWMSDAISKASTFVSYDLDYVG |
NCBI Accession | YP_004564607.1 |
---|---|
Location | 1202-2071 |
Gene Name | BC1 |
Protein Name | movement protein |
Coding Region | ATGGAATCTCAGTTAGCAAATCCTCCAAATGCGTTTAATTACATTGAGTCTCATAGAGACGAATATCAGCTGTCTCATGATCTAACTGACATTATCCTTCAATTTCCTTCCACGGCTGCTCAGTTAACTGCAAGGCTCAATCGTAGTTGTATGAAGATAGACCATTGCGTCATCGAATACAGGCAACAAGTCTCAATTAACGCAACAGGGTCGGTCATTGTAGAGATACATGACAAAAGAATGACGGACAATGAATCGTTACAAGCATCGTGGACGTTTCCCATAAGATGCAACATAGATCTCCATTATTTCTCGTCGTCATTCTTTTCGTTAAAAGACCCAATTCCATGGAAATTATACTACAGAGTGTCCGATACAAATGTACATCAACGAACACATTTTGCCAAATTCAAGGGCAAGTTGAAATTATCTACCGCTAAACACTCTGTAGATATACCCTTCCGGGCTCCCACGGTCAAGATTCATTCGAAACAGTTTTCGCACAAAGATGTCGACTTCTCGCATGTGGATTATGGACCGTGGGAAAGAAAAACCTTGAGCTCCACATCAATGTCCAGATTTGGGCTACCAGGCCCAATTGAATTAAAACCAGGTGAATCATGGGCCTCAAGGAGCACTATTGGGAGGACTCACACGGAGACGGAATCAGAAATACACCCATATAGAGAGCTCAATCGTCTAGGACCAAGCGTGCTAGACCCAGGTGATTCGGCGTCACAGGTCGGCTTACAGAGGGCCCAATCAAATATAACGATGTCCATGGCCCAATTAAACGACCTTGTTAGGACAACGGTCCAAGAGTGTATTAACAATAATTGTAATCCGTCACAACCCAAATCGTTGCAATAA |
Protein Sequence | MESQLANPPNAFNYIESHRDEYQLSHDLTDIILQFPSTAAQLTARLNRSCMKIDHCVIEYRQQVSINATGSVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYFSSSFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKIHSKQFSHKDVDFSHVDYGPWERKTLSSTSMSRFGLPGPIELKPGESWASRSTIGRTHTETESEIHPYRELNRLGPSVLDPGDSASQVGLQRAQSNITMSMAQLNDLVRTTVQECINNNCNPSQPKSLQ |
1 |
Ogawa T, et al. Virus Res. 2008 Nov;137(2):235-44. doi: 10.1016/j.virusres.2008.07.021. Epub 2008 Sep 13. PMID: 18722488 |
---|---|
2 |
Dong J, et al. Viruses. 2023 Sep 21;15(9):1972. doi: 10.3390/v15091972. PMID: 37766378 |
3 |
First Report of Citrus yellow vein clearing virus on Lemon in Yunnan, China. Chen HM, et al. Plant Dis. 2014 Dec;98(12):1747. doi: 10.1094/PDIS-04-14-0343-PDN. PMID: 30703922 |
4 |
Genome structure of tobacco necrosis virus strain A. Meulewaeter F, et al. Virology. 1990 Aug;177(2):699-709. doi: 10.1016/0042-6822(90)90536-z. PMID: 2371773 |
5 |
Strawberry crinkle virus, a Cytorhabdovirus needing more attention from virologists. Posthuma KI, et al. Mol Plant Pathol. 2000 Nov 1;1(6):331-6. doi: 10.1046/j.1364-3703.2000.00041.x. PMID: 20572980 |
6 |
Hu J, et al. Sci Rep. 2023 Jun 20;13(1):10040. doi: 10.1038/s41598-023-37022-2. PMID: 37340012 |
7 |
Andrade EC, et al. J Gen Virol. 2006 Dec;87(Pt 12):3687-3696. doi: 10.1099/vir.0.82279-0. PMID: 17098986 |
8 |
Malvastrum yellow vein Yunnan virus is amonopartite begomovirus. Jiang T, et al. Acta Virol. 2010;54(1):21-6. doi: 10.4149/av_2010_01_21. PMID: 20201610 |
9 |
Sardo L, et al. Virus Res. 2011 Nov;161(2):170-80. doi: 10.1016/j.virusres.2011.07.021. Epub 2011 Aug 4. PMID: 21843560 |
10 |
The Role of 3'UTR of RNA Viruses on mRNA Stability and Translation Enhancement. Rasekhian M, et al. Mini Rev Med Chem. 2021;21(16):2389-2398. doi: 10.2174/1389557521666210217092305. PMID: 33596798 |