Tobacco mottle leaf curl virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_002986925.1 |
| Isolate |
Cuba:Sancti Spiritus |
| Release date |
2018/8/26 |
| Submitter |
Dominguez,M., Ramos,P.L., Sanchez,Y., Crespo,J., Andino,V., Pujol,M., Borroto,C., Milagros,D.M. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGCTCCCCCAGGTGCCGTACTCTCGGGCGCGCAACGCTTTTCTTCGCATGCGCTGTCTTCCAATCATGTTGCGTCTGACGGGCCTAGATATTTTCAACAACTTGGTCGCTAAGTTGTTGCCCCGTCTATAAAGGAAAAGCGGGCTGGGCCAACGTCTTTAACTCAAAATGCCTAAGCGCGATCTCCCATGGCGCCCTTACGCGAAAATATCCAAGGTGAGCCGCAATGCGAATTACTCGCCCCGTACAAGAGTTGGCCCAATTGTCGACAAGGCCGCTGAATGGGTGAACAGGCCCATGTATAGGAAGCCCAGGATCTATCGGACGGTGAGAACCCCCGATGTGCCCAGGGGATGTGAAGGGCCTTGTAAGGTCCAGTCCTATGAACAGCGCCACGACATCTCGCACGTGGGCAAGGTCATGTGTATATCCGACGTGACACGTGGTAATGGCATTACCCATCGTGTTGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATCCTAGGGAAGATCGGGAAAATTTGGATGGATGAGAACATCAAGCTCAAGAACCACACGAACAGCGTCATGTTCTGGTTGGTCAGGGACCGTAGACCGTATGGAACGCCGATGGATTTCGGTCAGGTGTTCAACATGTTCGACAACGAGCCCAGTACCGCTACGGTTAAGAACGATCTACGTGATCGTTACCAGGTCATGCATCGGTTCCATGCTAAGGTCACGGGTGGACAGTATGCCAGCAACGAGCAGGCGATTGTGAGGCGGTTTTGGAAGGTCAACAACCACGTGGTCTACAACCACCAGGAGGCTGGCAAGTACGAGAACCACACGGAGAACGCCCTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCTGTATATGCAACTCTGAAGATACGAATCTATTTTTATGATTCGGTCATGAATTAATAAATTTTGAATTTTATTGAGTGATTTTCCAGTACATGATTTACATATGGTCTGTCTGTCGCGAAACGAACAGCTCTAATTACATTGTTAATGGAAATCACGCCTAATTGATCTAAGTACATGTTAACTAAGTGCCTAAACCTAAGCAAATATGTCGTTCCAGAAGCTGTCGTCGATGTCGTCCAGACTTGGAAGTTCAGGTAAGCCTTGTGGAGATCCAACGCTCTCCTGAGGTTGTGGTTGAACCGTATCTGGATGTGGTATATTCGTGTCCTGGTGTATGGAAGGTCCTCTACGTTGTATATCTTGAAATACAGGGGATTTTCTATCTCCCAGATATACGCGCCATTCTCCGCCTGATGTGCAGTGATGGGTTCCCCGGTGCGTGAATCCATGTCCCCGGCAGTCTATGTGGAAGTATATGGAGCACCCGCACTCTAGATCAATGCGTCTCCTCCTGATGGCCCTCCTCTCTGGCTTGCCTGTGTGCCTTCTTGATAGAGGGGGGCTGGAGGGGACGAGCCGCATCTGTCCCCAAAATTCCTGAGTGATGAGTTTTCCTCTTTGTCTAGGAAATCTTTATAGCTGGCACCCTCACCAGGATTGCATAGCACGATTGCTGGGATCCCGCCTTTAATTTGAACTGGCTTTCCGTATTTGCAGTTTGACTGCCAGTCTTTTTGTGACCCCAGCAATTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCATCAATTACGTTATACTCCACTTCGTTCGAGTAGACCCGGTGATTGAAGTCTAGGTGACCAGAGAGATAGTTATGTGGGCCTAACGCACGTGCCCACATTGTCTTACTGCAGGCCCACATTGTCTTCCCGGTCCTTGAATCACCTTCGACGATGATACTCATAGGTCTCTCCGGCCGCGCAGCGGAACCCCTTCCAAAATACTCATCGGCCCACTCTTGCATTTCTTCCGGGACGTTAGTGAGCGAGGAGAGTTGAAACGGAGGGACCCACGGTTCCGGAGCCTTTTGAAAGATCCTTTGTGCATTTGCGACGAGGTTATGATGTTGGAGGAAGAAATGTTGAGGCTGCTCTTCTTTTATTATTTGTAGAGCCTCTTCTGCAGAAGAGGCATTTAACGCCTTGGCATACGTGTCGTTAGCCGATTGGCAGCCTCCTCTAGCACTTCTTCCGTCGACCTGGAACTCTCCCCATTCCAGTGTATCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTCGATTTAGCTCCCTGAACGTTCGGATGGAAATGTGCTGACCGAGATGGGGAGACCAAGTCGAAGAATCTGTAATTCGTGCAGACGTACTTGCCTTCGAATTGGACAAGCACGTGGAGATGAGGCTCCCCATTCTCATGAAGCTCTCTGCATATCTTGATGAACTTCTTGTTTACTGGTGTGTCTAGGTTTTGTAATTGGGAAAGTGCCTCCTCTTTGCTAAGAGAGCACTGTGGATAAGTGAGAAAATAATTTCTTGACTGAACTCTAAATTTCTTAACCGATGGCATTTTTGTAATAATAGGGGGGGTCTCCAATTGAGTTCTCTCAAAACTTGCTCATGCCAATTGGAGACCGGAGTACCTTATATACTAGAACCCTCAATAGAACTCTCAATCTCGTTCGCACACGTGGCGGCCATCCGCTATAATATT
Gene Information
|
NCBI Accession
|
YP_009508169.1
|
|
Location
|
182-946 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGCCTAAGCGCGATCTCCCATGGCGCCCTTACGCGAAAATATCCAAGGTGAGCCGCAATGCGAATTACTCGCCCCGTACAAGAGTTGGCCCAATTGTCGACAAGGCCGCTGAATGGGTGAACAGGCCCATGTATAGGAAGCCCAGGATCTATCGGACGGTGAGAACCCCCGATGTGCCCAGGGGATGTGAAGGGCCTTGTAAGGTCCAGTCCTATGAACAGCGCCACGACATCTCGCACGTGGGCAAGGTCATGTGTATATCCGACGTGACACGTGGTAATGGCATTACCCATCGTGTTGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATCCTAGGGAAGATCGGGAAAATTTGGATGGATGAGAACATCAAGCTCAAGAACCACACGAACAGCGTCATGTTCTGGTTGGTCAGGGACCGTAGACCGTATGGAACGCCGATGGATTTCGGTCAGGTGTTCAACATGTTCGACAACGAGCCCAGTACCGCTACGGTTAAGAACGATCTACGTGATCGTTACCAGGTCATGCATCGGTTCCATGCTAAGGTCACGGGTGGACAGTATGCCAGCAACGAGCAGGCGATTGTGAGGCGGTTTTGGAAGGTCAACAACCACGTGGTCTACAACCACCAGGAGGCTGGCAAGTACGAGAACCACACGGAGAACGCCCTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCTGTATATGCAACTCTGAAGATACGAATCTATTTTTATGATTCGGTCATGAATTAA |
|
Protein Sequence
|
MPKRDLPWRPYAKISKVSRNANYSPRTRVGPIVDKAAEWVNRPMYRKPRIYRTVRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHRFHAKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVMN |
|
NCBI Accession
|
YP_009508170.1
|
|
Location
|
943-1341 |
|
Gene Name
|
AC3 |
|
Protein Name
|
replication enhancement protein |
|
Coding Region
|
ATGGATTCACGCACCGGGGAACCCATCACTGCACATCAGGCGGAGAATGGCGCGTATATCTGGGAGATAGAAAATCCCCTGTATTTCAAGATATACAACGTAGAGGACCTTCCATACACCAGGACACGAATATACCACATCCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGGATCTCCACAAGGCTTACCTGAACTTCCAAGTCTGGACGACATCGACGACAGCTTCTGGAACGACATATTTGCTTAGGTTTAGGCACTTAGTTAACATGTACTTAGATCAATTAGGCGTGATTTCCATTAACAATGTAATTAGAGCTGTTCGTTTCGCGACAGACAGACCATATGTAAATCATGTACTGGAAAATCACTCAATAAAATTCAAAATTTATTAA |
|
Protein Sequence
|
MDSRTGEPITAHQAENGAYIWEIENPLYFKIYNVEDLPYTRTRIYHIQIRFNHNLRRALDLHKAYLNFQVWTTSTTASGTTYLLRFRHLVNMYLDQLGVISINNVIRAVRFATDRPYVNHVLENHSIKFKIY |
|
NCBI Accession
|
YP_009508171.1
|
|
Location
|
1088-1474 |
|
Gene Name
|
AC2 |
|
Protein Name
|
transactivator protein |
|
Coding Region
|
ATGCGGCTCGTCCCCTCCAGCCCCCCTCTATCAAGAAGGCACACAGGCAAGCCAGAGAGGAGGGCCATCAGGAGGAGACGCATTGATCTAGAGTGCGGGTGCTCCATATACTTCCACATAGACTGCCGGGGACATGGATTCACGCACCGGGGAACCCATCACTGCACATCAGGCGGAGAATGGCGCGTATATCTGGGAGATAGAAAATCCCCTGTATTTCAAGATATACAACGTAGAGGACCTTCCATACACCAGGACACGAATATACCACATCCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGGATCTCCACAAGGCTTACCTGAACTTCCAAGTCTGGACGACATCGACGACAGCTTCTGGAACGACATATTTGCTTAG |
|
Protein Sequence
|
MRLVPSSPPLSRRHTGKPERRAIRRRRIDLECGCSIYFHIDCRGHGFTHRGTHHCTSGGEWRVYLGDRKSPVFQDIQRRGPSIHQDTNIPHPDTVQPQPQESVGSPQGLPELPSLDDIDDSFWNDIFA |
|
NCBI Accession
|
YP_009508172.1
|
|
Location
|
1384-2490 |
|
Gene Name
|
AC1 |
|
Protein Name
|
replication associated protein |
|
Coding Region
|
ATGCCATCGGTTAAGAAATTTAGAGTTCAGTCAAGAAATTATTTTCTCACTTATCCACAGTGCTCTCTTAGCAAAGAGGAGGCACTTTCCCAATTACAAAACCTAGACACACCAGTAAACAAGAAGTTCATCAAGATATGCAGAGAGCTTCATGAGAATGGGGAGCCTCATCTCCACGTGCTTGTCCAATTCGAAGGCAAGTACGTCTGCACGAATTACAGATTCTTCGACTTGGTCTCCCCATCTCGGTCAGCACATTTCCATCCGAACGTTCAGGGAGCTAAATCGAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTGGAATGGGGAGAGTTCCAGGTCGACGGAAGAAGTGCTAGAGGAGGCTGCCAATCGGCTAACGACACGTATGCCAAGGCGTTAAATGCCTCTTCTGCAGAAGAGGCTCTACAAATAATAAAAGAAGAGCAGCCTCAACATTTCTTCCTCCAACATCATAACCTCGTCGCAAATGCACAAAGGATCTTTCAAAAGGCTCCGGAACCGTGGGTCCCTCCGTTTCAACTCTCCTCGCTCACTAACGTCCCGGAAGAAATGCAAGAGTGGGCCGATGAGTATTTTGGAAGGGGTTCCGCTGCGCGGCCGGAGAGACCTATGAGTATCATCGTCGAAGGTGATTCAAGGACCGGGAAGACAATGTGGGCCTGCAGTAAGACAATGTGGGCACGTGCGTTAGGCCCACATAACTATCTCTCTGGTCACCTAGACTTCAATCACCGGGTCTACTCGAACGAAGTGGAGTATAACGTAATTGATGACGTCGCACCGCACTATCTAAAGCTAAAGCACTGGAAAGAATTGCTGGGGTCACAAAAAGACTGGCAGTCAAACTGCAAATACGGAAAGCCAGTTCAAATTAAAGGCGGGATCCCAGCAATCGTGCTATGCAATCCTGGTGAGGGTGCCAGCTATAAAGATTTCCTAGACAAAGAGGAAAACTCATCACTCAGGAATTTTGGGGACAGATGCGGCTCGTCCCCTCCAGCCCCCCTCTATCAAGAAGGCACACAGGCAAGCCAGAGAGGAGGGCCATCAGGAGGAGACGCATTGATCTAG |
|
Protein Sequence
|
MPSVKKFRVQSRNYFLTYPQCSLSKEEALSQLQNLDTPVNKKFIKICRELHENGEPHLHVLVQFEGKYVCTNYRFFDLVSPSRSAHFHPNVQGAKSSSDVKSYIDKDGDTLEWGEFQVDGRSARGGCQSANDTYAKALNASSAEEALQIIKEEQPQHFFLQHHNLVANAQRIFQKAPEPWVPPFQLSSLTNVPEEMQEWADEYFGRGSAARPERPMSIIVEGDSRTGKTMWACSKTMWARALGPHNYLSGHLDFNHRVYSNEVEYNVIDDVAPHYLKLKHWKELLGSQKDWQSNCKYGKPVQIKGGIPAIVLCNPGEGASYKDFLDKEENSSLRNFGDRCGSSPPAPLYQEGTQASQRGGPSGGDALI |
|
NCBI Accession
|
YP_009508173.1
|
|
Location
|
2076-2339 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGAGAATGGGGAGCCTCATCTCCACGTGCTTGTCCAATTCGAAGGCAAGTACGTCTGCACGAATTACAGATTCTTCGACTTGGTCTCCCCATCTCGGTCAGCACATTTCCATCCGAACGTTCAGGGAGCTAAATCGAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTGGAATGGGGAGAGTTCCAGGTCGACGGAAGAAGTGCTAGAGGAGGCTGCCAATCGGCTAACGACACGTATGCCAAGGCGTTAA |
|
Protein Sequence
|
MRMGSLISTCLSNSKASTSARITDSSTWSPHLGQHISIRTFRELNRAPTSSPTSTRTEIHWNGESSRSTEEVLEEAANRLTTRMPRR |