Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_002986925.1 |
Isolate | Cuba:Sancti Spiritus |
Release date | 2018/8/26 |
Submitter | Dominguez,M., Ramos,P.L., Sanchez,Y., Crespo,J., Andino,V., Pujol,M., Borroto,C., Milagros,D.M. |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_009508169.1 |
---|---|
Location | 182-946 |
Gene Name | AV1 |
Protein Name | coat protein |
Coding Region | ATGCCTAAGCGCGATCTCCCATGGCGCCCTTACGCGAAAATATCCAAGGTGAGCCGCAATGCGAATTACTCGCCCCGTACAAGAGTTGGCCCAATTGTCGACAAGGCCGCTGAATGGGTGAACAGGCCCATGTATAGGAAGCCCAGGATCTATCGGACGGTGAGAACCCCCGATGTGCCCAGGGGATGTGAAGGGCCTTGTAAGGTCCAGTCCTATGAACAGCGCCACGACATCTCGCACGTGGGCAAGGTCATGTGTATATCCGACGTGACACGTGGTAATGGCATTACCCATCGTGTTGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATCCTAGGGAAGATCGGGAAAATTTGGATGGATGAGAACATCAAGCTCAAGAACCACACGAACAGCGTCATGTTCTGGTTGGTCAGGGACCGTAGACCGTATGGAACGCCGATGGATTTCGGTCAGGTGTTCAACATGTTCGACAACGAGCCCAGTACCGCTACGGTTAAGAACGATCTACGTGATCGTTACCAGGTCATGCATCGGTTCCATGCTAAGGTCACGGGTGGACAGTATGCCAGCAACGAGCAGGCGATTGTGAGGCGGTTTTGGAAGGTCAACAACCACGTGGTCTACAACCACCAGGAGGCTGGCAAGTACGAGAACCACACGGAGAACGCCCTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCTGTATATGCAACTCTGAAGATACGAATCTATTTTTATGATTCGGTCATGAATTAA |
Protein Sequence | MPKRDLPWRPYAKISKVSRNANYSPRTRVGPIVDKAAEWVNRPMYRKPRIYRTVRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHRFHAKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVMN |
NCBI Accession | YP_009508170.1 |
---|---|
Location | 943-1341 |
Gene Name | AC3 |
Protein Name | replication enhancement protein |
Coding Region | ATGGATTCACGCACCGGGGAACCCATCACTGCACATCAGGCGGAGAATGGCGCGTATATCTGGGAGATAGAAAATCCCCTGTATTTCAAGATATACAACGTAGAGGACCTTCCATACACCAGGACACGAATATACCACATCCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGGATCTCCACAAGGCTTACCTGAACTTCCAAGTCTGGACGACATCGACGACAGCTTCTGGAACGACATATTTGCTTAGGTTTAGGCACTTAGTTAACATGTACTTAGATCAATTAGGCGTGATTTCCATTAACAATGTAATTAGAGCTGTTCGTTTCGCGACAGACAGACCATATGTAAATCATGTACTGGAAAATCACTCAATAAAATTCAAAATTTATTAA |
Protein Sequence | MDSRTGEPITAHQAENGAYIWEIENPLYFKIYNVEDLPYTRTRIYHIQIRFNHNLRRALDLHKAYLNFQVWTTSTTASGTTYLLRFRHLVNMYLDQLGVISINNVIRAVRFATDRPYVNHVLENHSIKFKIY |
NCBI Accession | YP_009508171.1 |
---|---|
Location | 1088-1474 |
Gene Name | AC2 |
Protein Name | transactivator protein |
Coding Region | ATGCGGCTCGTCCCCTCCAGCCCCCCTCTATCAAGAAGGCACACAGGCAAGCCAGAGAGGAGGGCCATCAGGAGGAGACGCATTGATCTAGAGTGCGGGTGCTCCATATACTTCCACATAGACTGCCGGGGACATGGATTCACGCACCGGGGAACCCATCACTGCACATCAGGCGGAGAATGGCGCGTATATCTGGGAGATAGAAAATCCCCTGTATTTCAAGATATACAACGTAGAGGACCTTCCATACACCAGGACACGAATATACCACATCCAGATACGGTTCAACCACAACCTCAGGAGAGCGTTGGATCTCCACAAGGCTTACCTGAACTTCCAAGTCTGGACGACATCGACGACAGCTTCTGGAACGACATATTTGCTTAG |
Protein Sequence | MRLVPSSPPLSRRHTGKPERRAIRRRRIDLECGCSIYFHIDCRGHGFTHRGTHHCTSGGEWRVYLGDRKSPVFQDIQRRGPSIHQDTNIPHPDTVQPQPQESVGSPQGLPELPSLDDIDDSFWNDIFA |
NCBI Accession | YP_009508172.1 |
---|---|
Location | 1384-2490 |
Gene Name | AC1 |
Protein Name | replication associated protein |
Coding Region | ATGCCATCGGTTAAGAAATTTAGAGTTCAGTCAAGAAATTATTTTCTCACTTATCCACAGTGCTCTCTTAGCAAAGAGGAGGCACTTTCCCAATTACAAAACCTAGACACACCAGTAAACAAGAAGTTCATCAAGATATGCAGAGAGCTTCATGAGAATGGGGAGCCTCATCTCCACGTGCTTGTCCAATTCGAAGGCAAGTACGTCTGCACGAATTACAGATTCTTCGACTTGGTCTCCCCATCTCGGTCAGCACATTTCCATCCGAACGTTCAGGGAGCTAAATCGAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTGGAATGGGGAGAGTTCCAGGTCGACGGAAGAAGTGCTAGAGGAGGCTGCCAATCGGCTAACGACACGTATGCCAAGGCGTTAAATGCCTCTTCTGCAGAAGAGGCTCTACAAATAATAAAAGAAGAGCAGCCTCAACATTTCTTCCTCCAACATCATAACCTCGTCGCAAATGCACAAAGGATCTTTCAAAAGGCTCCGGAACCGTGGGTCCCTCCGTTTCAACTCTCCTCGCTCACTAACGTCCCGGAAGAAATGCAAGAGTGGGCCGATGAGTATTTTGGAAGGGGTTCCGCTGCGCGGCCGGAGAGACCTATGAGTATCATCGTCGAAGGTGATTCAAGGACCGGGAAGACAATGTGGGCCTGCAGTAAGACAATGTGGGCACGTGCGTTAGGCCCACATAACTATCTCTCTGGTCACCTAGACTTCAATCACCGGGTCTACTCGAACGAAGTGGAGTATAACGTAATTGATGACGTCGCACCGCACTATCTAAAGCTAAAGCACTGGAAAGAATTGCTGGGGTCACAAAAAGACTGGCAGTCAAACTGCAAATACGGAAAGCCAGTTCAAATTAAAGGCGGGATCCCAGCAATCGTGCTATGCAATCCTGGTGAGGGTGCCAGCTATAAAGATTTCCTAGACAAAGAGGAAAACTCATCACTCAGGAATTTTGGGGACAGATGCGGCTCGTCCCCTCCAGCCCCCCTCTATCAAGAAGGCACACAGGCAAGCCAGAGAGGAGGGCCATCAGGAGGAGACGCATTGATCTAG |
Protein Sequence | MPSVKKFRVQSRNYFLTYPQCSLSKEEALSQLQNLDTPVNKKFIKICRELHENGEPHLHVLVQFEGKYVCTNYRFFDLVSPSRSAHFHPNVQGAKSSSDVKSYIDKDGDTLEWGEFQVDGRSARGGCQSANDTYAKALNASSAEEALQIIKEEQPQHFFLQHHNLVANAQRIFQKAPEPWVPPFQLSSLTNVPEEMQEWADEYFGRGSAARPERPMSIIVEGDSRTGKTMWACSKTMWARALGPHNYLSGHLDFNHRVYSNEVEYNVIDDVAPHYLKLKHWKELLGSQKDWQSNCKYGKPVQIKGGIPAIVLCNPGEGASYKDFLDKEENSSLRNFGDRCGSSPPAPLYQEGTQASQRGGPSGGDALI |
NCBI Accession | YP_009508173.1 |
---|---|
Location | 2076-2339 |
Gene Name | AC4 |
Protein Name | AC4 protein |
Coding Region | ATGAGAATGGGGAGCCTCATCTCCACGTGCTTGTCCAATTCGAAGGCAAGTACGTCTGCACGAATTACAGATTCTTCGACTTGGTCTCCCCATCTCGGTCAGCACATTTCCATCCGAACGTTCAGGGAGCTAAATCGAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTGGAATGGGGAGAGTTCCAGGTCGACGGAAGAAGTGCTAGAGGAGGCTGCCAATCGGCTAACGACACGTATGCCAAGGCGTTAA |
Protein Sequence | MRMGSLISTCLSNSKASTSARITDSSTWSPHLGQHISIRTFRELNRAPTSSPTSTRTEIHWNGESSRSTEEVLEEAANRLTTRMPRR |
1 |
Pest categorisation of non-EU viruses of Rubus L. EFSA Panel on Plant Health (PLH), et al. EFSA J. 2020 Jan 16;18(1):e05928. doi: 10.2903/j.efsa.2020.5928. eCollection 2020 Jan. PMID: 32626483 |
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2 |
Zhou YC, et al. Arch Virol. 2008;153(4):693-706. doi: 10.1007/s00705-008-0042-9. Epub 2008 Feb 16. PMID: 18278427 |
3 |
Jyothsna P, et al. Arch Virol. 2013 Jan;158(1):217-24. doi: 10.1007/s00705-012-1468-7. Epub 2012 Sep 15. PMID: 22983111 |
4 |
Kumari N, et al. Virusdisease. 2020 Sep;31(3):323-332. doi: 10.1007/s13337-020-00597-9. Epub 2020 May 15. PMID: 32904916 |
5 |
Sardo L, et al. Virus Res. 2011 Nov;161(2):170-80. doi: 10.1016/j.virusres.2011.07.021. Epub 2011 Aug 4. PMID: 21843560 |
6 |
A New Begomovirus Causes Tomato Leaf Curl Disease in Baja California Sur, Mexico. Holguín-Peña RJ, et al. Plant Dis. 2005 Mar;89(3):341. doi: 10.1094/PD-89-0341A. PMID: 30795368 |
7 |
Molecular characterization of a new begomovirus infecting Mirabilis jalapa in northern India. Kulshreshtha A, et al. Arch Virol. 2017 Jul;162(7):2163-2167. doi: 10.1007/s00705-017-3330-4. Epub 2017 Mar 24. PMID: 28342034 |
8 |
Zhang X, et al. PLoS One. 2023 Jan 25;18(1):e0280303. doi: 10.1371/journal.pone.0280303. eCollection 2023. PMID: 36696381 |
9 |
Arogundade O, et al. Virol J. 2012 Apr 11;9:79. doi: 10.1186/1743-422X-9-79. PMID: 22495040 |
10 |
First Report of a Begomovirus Associated with Tomato Yellow Leaf Curl Disease in Ethiopia. Shih SL, et al. Plant Dis. 2006 Jul;90(7):974. doi: 10.1094/PD-90-0974A. PMID: 30781051 |