Tobacco leaf rugose virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_002986915.1
Isolate Cuba:Havana
Release date 2018/8/26
Submitter Dominguez,M., Ramos,P.L., Echemendia,A.L., Peral,R., Crespo,J., Andino,V., Pujol,M., Borroto,C.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_038890
ACCGGATGGCCGCGCGCCCCCCTTGGTGCCGTACTCCTTTGGTGCGCTTGTGGACCCACACCTAATAATGACAATTTTGTATCGTCCAATCATATTGCGTGTGACGAGCTTAGTTATCTGTGCCAACTTCTTCGGGACCAAGTTAAGAGTGTGGGTCTATAAAAGAATTTGAATTGGCGTTGTTCTTTATGTCAGAATGGTTAAGCGGGACGCTCCTTGGCGCTCGATGGCGGGTCCCTCCAAGGTTAGTCGCAACGCCAATTACTCCCCTCGTGGAGTTTCGGGCCCAAGAGTGAACAAGGCCCAAGCTTGGGTGAACAGGCCCATGTATAGGAAGCCCATGATCTACCGGATGTTGAGAGGCCCCGATATTCCTAAGGGCTGTGAAGGTCCTTGTAAGGTCCAATCTTATGAGCAGCGACATGACATCTCCCATGTCGGCAAGGTCATGTGCATATCCGATGTGACGCGTGGTAATGGTATTACCCATCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATCTTAGGTAAGATATGGATGGACGAAAACATCAAGTTGAAGAACCACACGAACAGCGTCATGTTCTGGTTGGTCAGGGACCGTAGACCCTATGGCACCCCTATGGACTTTGGCCAGGTGTTTAACATGTTCGACAACGAGCCTAGCACGGCTACCGTGAAGAACGATCTCCGCGATCGTTACCAGGTCATGCACAGGTTCTATGCCAAAGTCACAGGTGGACAGTACGCCAGCAACGAGCAGGCATTGGTTAGGCGATTCTGGAAGGTGAACAACCACGTGGTCTACAACCACCAGGAAGCTGGCAAGTACGAGAACCACACCGAGAACGCCCTTTTATTGTATATGGCATGTACTCATGCGTCTAACCCTGTGTATGCAACTCTGAAGATTCGGATCTATTTTTACGATTCGATCATGAATTAATAAATTTTGAATTTTATTGAATGATTTTCCAGTACATAATTTACATACGTTCTGTCCGTCGCGAATCGTACAGCTCTAATTACATTGTTAACTGAAATCACGCCTAACTGATCTAAATACAAGTTGACTAAGTGCCTAAACCTAGCTAAATATGTCTGCCCAGAAGCTGTCAGGGAAGTCGTCCAGACTTGGAAGTTCATGTACGCCTTGTGGAGATCCAACGCTCTCCTCAGGTTGTGGCTGAACCGTATCTGGATGTGGTATACTCTGGTCCTGGTGTACAGCGGGTCCTCTACCCTGTACATCCTGAAATAGAGGGGATTTTCTATCTCCCAGATATACACGCCATTCTCCGCCTGATGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGCCCGGTACAGCCTATGTGGAAGTAGATGGAGCACCCGCACTGTAAATCAATCCTGCGTCTCCTGATTGCCCTCCTTTTCTTGTATTGTCTGTGCGCCTTCTTGATAGAGGGGGGCTGTGAGGGTGATGAAGACCGCATTCTTGATGGTCCAGTTTCTGAGTGATGCGTTTTCCTCTTTGTCGAGGAAATCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATTCCTCCTTTAATTTGAACTGGCTTGCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATAATCCACTTCGTTTGAATAGACCCGGGCATTGAAGTCCAGGTGTCCACTGAGATAGTTATGCGGGCCCAATGAACGAGCCCACATGGTCTTTCCCGTCCTTGAATCACCTTCAACTATGATACTCAGTGGTCTTTCTGGCCGCGCAGAACCTCTTCCAAAATAATCATCCGCCCACTCTTGCATGTCTTCCGGAACGTTAGTGAACGAGGAGAGTTGAAACGGAGGAACCCATTGTTCTGGAGCCTTTGCGAATATCCTTTCTAAGTTGGAGCGGATGTTATGATTCTGCAGGACAAAATCTTTTGGCTGTTCTTCCCTTAAAACCGCCATGGCAGACTGAACAGAGTCTGCATTTAACGCCTTGGCATATGAATCATTAGCAGACTGCTTGCCTCCTCTAGCAGATCTGCCGTCGATCTGGAATTCTCCCCATTCCAGTGTATCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGACCAGATCGAAGAATCTGTTATTCTTGCACTGGTATTTTCCCTCGAACTGTATAAGCACATGGAGATGAGGCTCCCCATTCTCATGCAGTTCTCTGCAGATTTTGATGAACTTCTTGTTAACTGGTGTTTCTAGGTTTTGTAATTGGGAAAGTGCCTCTTCTTTTGGAAGAGAGCACTGCGGATAAGTGATGAAATTAGTTTTTGGCTGAGATTTGAAACGCTTGACTGATGGCATTTTTTGTAATAAGAAGGGAGACCCCAATTGAGCTCTCTCTAAACTTGCTATATGAATTGGGGTCTGGGGTCTCATTTATACTAGAAGGCTCAATAGAACTCTCAATCTCGTTCGCACACGTGCGGCCATCCGATATAATATT

Gene Information

NCBI Accession YP_009508160.1
Location 197-952
Gene Name AV1
Protein Name coat protein
Coding Region ATGGTTAAGCGGGACGCTCCTTGGCGCTCGATGGCGGGTCCCTCCAAGGTTAGTCGCAACGCCAATTACTCCCCTCGTGGAGTTTCGGGCCCAAGAGTGAACAAGGCCCAAGCTTGGGTGAACAGGCCCATGTATAGGAAGCCCATGATCTACCGGATGTTGAGAGGCCCCGATATTCCTAAGGGCTGTGAAGGTCCTTGTAAGGTCCAATCTTATGAGCAGCGACATGACATCTCCCATGTCGGCAAGGTCATGTGCATATCCGATGTGACGCGTGGTAATGGTATTACCCATCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATCTTAGGTAAGATATGGATGGACGAAAACATCAAGTTGAAGAACCACACGAACAGCGTCATGTTCTGGTTGGTCAGGGACCGTAGACCCTATGGCACCCCTATGGACTTTGGCCAGGTGTTTAACATGTTCGACAACGAGCCTAGCACGGCTACCGTGAAGAACGATCTCCGCGATCGTTACCAGGTCATGCACAGGTTCTATGCCAAAGTCACAGGTGGACAGTACGCCAGCAACGAGCAGGCATTGGTTAGGCGATTCTGGAAGGTGAACAACCACGTGGTCTACAACCACCAGGAAGCTGGCAAGTACGAGAACCACACCGAGAACGCCCTTTTATTGTATATGGCATGTACTCATGCGTCTAACCCTGTGTATGCAACTCTGAAGATTCGGATCTATTTTTACGATTCGATCATGAATTAA
Protein Sequence MVKRDAPWRSMAGPSKVSRNANYSPRGVSGPRVNKAQAWVNRPMYRKPMIYRMLRGPDIPKGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIMN

NCBI Accession YP_009508161.1
Location 949-1347
Gene Name AC3
Protein Name replication enhancement protein
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCACATCAGGCGGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAGGATGTACAGGGTAGAGGACCCGCTGTACACCAGGACCAGAGTATACCACATCCAGATACGGTTCAGCCACAACCTGAGGAGAGCGTTGGATCTCCACAAGGCGTACATGAACTTCCAAGTCTGGACGACTTCCCTGACAGCTTCTGGGCAGACATATTTAGCTAGGTTTAGGCACTTAGTCAACTTGTATTTAGATCAGTTAGGCGTGATTTCAGTTAACAATGTAATTAGAGCTGTACGATTCGCGACGGACAGAACGTATGTAAATTATGTACTGGAAAATCATTCAATAAAATTCAAAATTTATTAA
Protein Sequence MDSRTGELITAHQAENGVYIWEIENPLYFRMYRVEDPLYTRTRVYHIQIRFSHNLRRALDLHKAYMNFQVWTTSLTASGQTYLARFRHLVNLYLDQLGVISVNNVIRAVRFATDRTYVNYVLENHSIKFKIY

NCBI Accession YP_009508162.1
Location 1094-1486
Gene Name AC2
Protein Name transactivator protein
Coding Region ATGCGGTCTTCATCACCCTCACAGCCCCCCTCTATCAAGAAGGCGCACAGACAATACAAGAAAAGGAGGGCAATCAGGAGACGCAGGATTGATTTACAGTGCGGGTGCTCCATCTACTTCCACATAGGCTGTACCGGGCATGGATTCACGCACAGGGGAACTCATCACTGCACATCAGGCGGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAGGATGTACAGGGTAGAGGACCCGCTGTACACCAGGACCAGAGTATACCACATCCAGATACGGTTCAGCCACAACCTGAGGAGAGCGTTGGATCTCCACAAGGCGTACATGAACTTCCAAGTCTGGACGACTTCCCTGACAGCTTCTGGGCAGACATATTTAGCTAG
Protein Sequence MRSSSPSQPPSIKKAHRQYKKRRAIRRRRIDLQCGCSIYFHIGCTGHGFTHRGTHHCTSGGEWRVYLGDRKSPLFQDVQGRGPAVHQDQSIPHPDTVQPQPEESVGSPQGVHELPSLDDFPDSFWADIFS

NCBI Accession YP_009508163.1
Location 1395-2480
Gene Name AC1
Protein Name replication associated protein
Coding Region ATGCCATCAGTCAAGCGTTTCAAATCTCAGCCAAAAACTAATTTCATCACTTATCCGCAGTGCTCTCTTCCAAAAGAAGAGGCACTTTCCCAATTACAAAACCTAGAAACACCAGTTAACAAGAAGTTCATCAAAATCTGCAGAGAACTGCATGAGAATGGGGAGCCTCATCTCCATGTGCTTATACAGTTCGAGGGAAAATACCAGTGCAAGAATAACAGATTCTTCGATCTGGTCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTGGAATGGGGAGAATTCCAGATCGACGGCAGATCTGCTAGAGGAGGCAAGCAGTCTGCTAATGATTCATATGCCAAGGCGTTAAATGCAGACTCTGTTCAGTCTGCCATGGCGGTTTTAAGGGAAGAACAGCCAAAAGATTTTGTCCTGCAGAATCATAACATCCGCTCCAACTTAGAAAGGATATTCGCAAAGGCTCCAGAACAATGGGTTCCTCCGTTTCAACTCTCCTCGTTCACTAACGTTCCGGAAGACATGCAAGAGTGGGCGGATGATTATTTTGGAAGAGGTTCTGCGCGGCCAGAAAGACCACTGAGTATCATAGTTGAAGGTGATTCAAGGACGGGAAAGACCATGTGGGCTCGTTCATTGGGCCCGCATAACTATCTCAGTGGACACCTGGACTTCAATGCCCGGGTCTATTCAAACGAAGTGGATTATAACGTCATTGATGACGTCGCACCGCACTATCTAAAGCTAAAGCACTGGAAAGAACTTCTGGGGGCCCAGAAGGACTGGCAGTCAAATTGCAAATACGGCAAGCCAGTTCAAATTAAAGGAGGAATCCCATCAATCGTGCTTTGCAATCCTGGTGAGGGTGCCAGCTATAAAGATTTCCTCGACAAAGAGGAAAACGCATCACTCAGAAACTGGACCATCAAGAATGCGGTCTTCATCACCCTCACAGCCCCCCTCTATCAAGAAGGCGCACAGACAATACAAGAAAAGGAGGGCAATCAGGAGACGCAGGATTGA
Protein Sequence MPSVKRFKSQPKTNFITYPQCSLPKEEALSQLQNLETPVNKKFIKICRELHENGEPHLHVLIQFEGKYQCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGKQSANDSYAKALNADSVQSAMAVLREEQPKDFVLQNHNIRSNLERIFAKAPEQWVPPFQLSSFTNVPEDMQEWADDYFGRGSARPERPLSIIVEGDSRTGKTMWARSLGPHNYLSGHLDFNARVYSNEVDYNVIDDVAPHYLKLKHWKELLGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENASLRNWTIKNAVFITLTAPLYQEGAQTIQEKEGNQETQD

NCBI Accession YP_009508164.1
Location 2066-2329
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGAGAATGGGGAGCCTCATCTCCATGTGCTTATACAGTTCGAGGGAAAATACCAGTGCAAGAATAACAGATTCTTCGATCTGGTCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTGGAATGGGGAGAATTCCAGATCGACGGCAGATCTGCTAGAGGAGGCAAGCAGTCTGCTAATGATTCATATGCCAAGGCGTTAA
Protein Sequence MRMGSLISMCLYSSRENTSARITDSSIWSPQPGQHISIRTYRELNPAPTSSPTSTRTEIHWNGENSRSTADLLEEASSLLMIHMPRR

References More References in PubMed

1

Tomato brown rugose fruit virus: An emerging and rapidly spreading plant RNA virus that threatens tomato production worldwide.

Zhang S, et al.  Mol Plant Pathol. 2022 Sep;23(9):1262-1277. doi: 10.1111/mpp.13229. Epub 2022 May 22.

PMID: 35598295

2

Molecular Characterization of Tobacco leaf rugose virus, a New Begomovirus Infecting Tobacco in Cuba.

Domínguez M, et al.  Plant Dis. 2002 Sep;86(9):1050. doi: 10.1094/PDIS.2002.86.9.1050A.

PMID: 30818540

3

First report of Tomato brown rugose fruit virus in tomato in Spain.

Alfaro-Fernández A, et al.  Plant Dis. 2020 Sep 23. doi: 10.1094/PDIS-06-20-1251-PDN. Online ahead of print.

PMID: 32967554

4

Leaf Plasmodesmata Respond Differently to TMV, ToBRFV and TYLCV Infection.

Kutsher Y, et al.  Plants (Basel). 2021 Jul 14;10(7):1442. doi: 10.3390/plants10071442.

PMID: 34371642

5

Screening of Solanum (sections Lycopersicon and Juglandifolia) germplasm for reactions to the tomato brown rugose fruit virus (ToBRFV).

Jewehan A, et al.  J Plant Dis Prot (2006). 2022;129(1):117-123. doi: 10.1007/s41348-021-00535-x. Epub 2021 Oct 9.

PMID: 34659580

6

Cucurbit leaf crumple virus Identified in Common Bean in Florida.

Adkins S, et al.  Plant Dis. 2009 Mar;93(3):320. doi: 10.1094/PDIS-93-3-0320B.

PMID: 30764208

7

Identification of genetic determinants of tomato brown rugose fruit virus that enable infection of plants harbouring the Tm-22 resistance gene.

Yan ZY, et al.  Mol Plant Pathol. 2021 Nov;22(11):1347-1357. doi: 10.1111/mpp.13115. Epub 2021 Aug 13.

PMID: 34390124

8

Tomato dwarf leaf virus, a New World begomovirus infecting tomato in Argentina.

Vaghi Medina CG, et al.  Arch Virol. 2012 Oct;157(10):1975-80. doi: 10.1007/s00705-012-1355-2. Epub 2012 Jun 21.

PMID: 22718220

9

A New Ilarvirus Isolated from Grapevine in Greece.

Girgis SM, et al.  Plant Dis. 2000 Dec;84(12):1345. doi: 10.1094/PDIS.2000.84.12.1345C.

PMID: 30831890

10

First report of a complete genome sequence for a begomovirus infecting Jatropha gossypifolia in the Americas.

Simmonds-Gordon RN, et al.  Arch Virol. 2014 Oct;159(10):2815-8. doi: 10.1007/s00705-014-2112-5. Epub 2014 May 29.

PMID: 24872185