Tobacco leaf rugose virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_002986915.1 |
| Isolate | Cuba:Havana |
| Release date | 2018/8/26 |
| Submitter | Dominguez,M., Ramos,P.L., Echemendia,A.L., Peral,R., Crespo,J., Andino,V., Pujol,M., Borroto,C. |
| Host | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_038890
Gene Information
| NCBI Accession | YP_009508160.1 |
|---|---|
| Location | 197-952 |
| Gene Name | AV1 |
| Protein Name | coat protein |
| Coding Region | ATGGTTAAGCGGGACGCTCCTTGGCGCTCGATGGCGGGTCCCTCCAAGGTTAGTCGCAACGCCAATTACTCCCCTCGTGGAGTTTCGGGCCCAAGAGTGAACAAGGCCCAAGCTTGGGTGAACAGGCCCATGTATAGGAAGCCCATGATCTACCGGATGTTGAGAGGCCCCGATATTCCTAAGGGCTGTGAAGGTCCTTGTAAGGTCCAATCTTATGAGCAGCGACATGACATCTCCCATGTCGGCAAGGTCATGTGCATATCCGATGTGACGCGTGGTAATGGTATTACCCATCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATCTTAGGTAAGATATGGATGGACGAAAACATCAAGTTGAAGAACCACACGAACAGCGTCATGTTCTGGTTGGTCAGGGACCGTAGACCCTATGGCACCCCTATGGACTTTGGCCAGGTGTTTAACATGTTCGACAACGAGCCTAGCACGGCTACCGTGAAGAACGATCTCCGCGATCGTTACCAGGTCATGCACAGGTTCTATGCCAAAGTCACAGGTGGACAGTACGCCAGCAACGAGCAGGCATTGGTTAGGCGATTCTGGAAGGTGAACAACCACGTGGTCTACAACCACCAGGAAGCTGGCAAGTACGAGAACCACACCGAGAACGCCCTTTTATTGTATATGGCATGTACTCATGCGTCTAACCCTGTGTATGCAACTCTGAAGATTCGGATCTATTTTTACGATTCGATCATGAATTAA |
| Protein Sequence | MVKRDAPWRSMAGPSKVSRNANYSPRGVSGPRVNKAQAWVNRPMYRKPMIYRMLRGPDIPKGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIMN |
| NCBI Accession | YP_009508161.1 |
|---|---|
| Location | 949-1347 |
| Gene Name | AC3 |
| Protein Name | replication enhancement protein |
| Coding Region | ATGGATTCACGCACAGGGGAACTCATCACTGCACATCAGGCGGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAGGATGTACAGGGTAGAGGACCCGCTGTACACCAGGACCAGAGTATACCACATCCAGATACGGTTCAGCCACAACCTGAGGAGAGCGTTGGATCTCCACAAGGCGTACATGAACTTCCAAGTCTGGACGACTTCCCTGACAGCTTCTGGGCAGACATATTTAGCTAGGTTTAGGCACTTAGTCAACTTGTATTTAGATCAGTTAGGCGTGATTTCAGTTAACAATGTAATTAGAGCTGTACGATTCGCGACGGACAGAACGTATGTAAATTATGTACTGGAAAATCATTCAATAAAATTCAAAATTTATTAA |
| Protein Sequence | MDSRTGELITAHQAENGVYIWEIENPLYFRMYRVEDPLYTRTRVYHIQIRFSHNLRRALDLHKAYMNFQVWTTSLTASGQTYLARFRHLVNLYLDQLGVISVNNVIRAVRFATDRTYVNYVLENHSIKFKIY |
| NCBI Accession | YP_009508162.1 |
|---|---|
| Location | 1094-1486 |
| Gene Name | AC2 |
| Protein Name | transactivator protein |
| Coding Region | ATGCGGTCTTCATCACCCTCACAGCCCCCCTCTATCAAGAAGGCGCACAGACAATACAAGAAAAGGAGGGCAATCAGGAGACGCAGGATTGATTTACAGTGCGGGTGCTCCATCTACTTCCACATAGGCTGTACCGGGCATGGATTCACGCACAGGGGAACTCATCACTGCACATCAGGCGGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAGGATGTACAGGGTAGAGGACCCGCTGTACACCAGGACCAGAGTATACCACATCCAGATACGGTTCAGCCACAACCTGAGGAGAGCGTTGGATCTCCACAAGGCGTACATGAACTTCCAAGTCTGGACGACTTCCCTGACAGCTTCTGGGCAGACATATTTAGCTAG |
| Protein Sequence | MRSSSPSQPPSIKKAHRQYKKRRAIRRRRIDLQCGCSIYFHIGCTGHGFTHRGTHHCTSGGEWRVYLGDRKSPLFQDVQGRGPAVHQDQSIPHPDTVQPQPEESVGSPQGVHELPSLDDFPDSFWADIFS |
| NCBI Accession | YP_009508163.1 |
|---|---|
| Location | 1395-2480 |
| Gene Name | AC1 |
| Protein Name | replication associated protein |
| Coding Region | ATGCCATCAGTCAAGCGTTTCAAATCTCAGCCAAAAACTAATTTCATCACTTATCCGCAGTGCTCTCTTCCAAAAGAAGAGGCACTTTCCCAATTACAAAACCTAGAAACACCAGTTAACAAGAAGTTCATCAAAATCTGCAGAGAACTGCATGAGAATGGGGAGCCTCATCTCCATGTGCTTATACAGTTCGAGGGAAAATACCAGTGCAAGAATAACAGATTCTTCGATCTGGTCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTGGAATGGGGAGAATTCCAGATCGACGGCAGATCTGCTAGAGGAGGCAAGCAGTCTGCTAATGATTCATATGCCAAGGCGTTAAATGCAGACTCTGTTCAGTCTGCCATGGCGGTTTTAAGGGAAGAACAGCCAAAAGATTTTGTCCTGCAGAATCATAACATCCGCTCCAACTTAGAAAGGATATTCGCAAAGGCTCCAGAACAATGGGTTCCTCCGTTTCAACTCTCCTCGTTCACTAACGTTCCGGAAGACATGCAAGAGTGGGCGGATGATTATTTTGGAAGAGGTTCTGCGCGGCCAGAAAGACCACTGAGTATCATAGTTGAAGGTGATTCAAGGACGGGAAAGACCATGTGGGCTCGTTCATTGGGCCCGCATAACTATCTCAGTGGACACCTGGACTTCAATGCCCGGGTCTATTCAAACGAAGTGGATTATAACGTCATTGATGACGTCGCACCGCACTATCTAAAGCTAAAGCACTGGAAAGAACTTCTGGGGGCCCAGAAGGACTGGCAGTCAAATTGCAAATACGGCAAGCCAGTTCAAATTAAAGGAGGAATCCCATCAATCGTGCTTTGCAATCCTGGTGAGGGTGCCAGCTATAAAGATTTCCTCGACAAAGAGGAAAACGCATCACTCAGAAACTGGACCATCAAGAATGCGGTCTTCATCACCCTCACAGCCCCCCTCTATCAAGAAGGCGCACAGACAATACAAGAAAAGGAGGGCAATCAGGAGACGCAGGATTGA |
| Protein Sequence | MPSVKRFKSQPKTNFITYPQCSLPKEEALSQLQNLETPVNKKFIKICRELHENGEPHLHVLIQFEGKYQCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGKQSANDSYAKALNADSVQSAMAVLREEQPKDFVLQNHNIRSNLERIFAKAPEQWVPPFQLSSFTNVPEDMQEWADDYFGRGSARPERPLSIIVEGDSRTGKTMWARSLGPHNYLSGHLDFNARVYSNEVDYNVIDDVAPHYLKLKHWKELLGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENASLRNWTIKNAVFITLTAPLYQEGAQTIQEKEGNQETQD |
| NCBI Accession | YP_009508164.1 |
|---|---|
| Location | 2066-2329 |
| Gene Name | AC4 |
| Protein Name | AC4 protein |
| Coding Region | ATGAGAATGGGGAGCCTCATCTCCATGTGCTTATACAGTTCGAGGGAAAATACCAGTGCAAGAATAACAGATTCTTCGATCTGGTCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTGGAATGGGGAGAATTCCAGATCGACGGCAGATCTGCTAGAGGAGGCAAGCAGTCTGCTAATGATTCATATGCCAAGGCGTTAA |
| Protein Sequence | MRMGSLISMCLYSSRENTSARITDSSIWSPQPGQHISIRTYRELNPAPTSSPTSTRTEIHWNGENSRSTADLLEEASSLLMIHMPRR |
References More References in PubMed
| 1 |
Zhang S, et al. Mol Plant Pathol. 2022 Sep;23(9):1262-1277. doi: 10.1111/mpp.13229. Epub 2022 May 22. PMID: 35598295 |
|---|---|
| 2 |
Domínguez M, et al. Plant Dis. 2002 Sep;86(9):1050. doi: 10.1094/PDIS.2002.86.9.1050A. PMID: 30818540 |
| 3 |
First report of Tomato brown rugose fruit virus in tomato in Spain. Alfaro-Fernández A, et al. Plant Dis. 2020 Sep 23. doi: 10.1094/PDIS-06-20-1251-PDN. Online ahead of print. PMID: 32967554 |
| 4 |
Leaf Plasmodesmata Respond Differently to TMV, ToBRFV and TYLCV Infection. Kutsher Y, et al. Plants (Basel). 2021 Jul 14;10(7):1442. doi: 10.3390/plants10071442. PMID: 34371642 |
| 5 |
Jewehan A, et al. J Plant Dis Prot (2006). 2022;129(1):117-123. doi: 10.1007/s41348-021-00535-x. Epub 2021 Oct 9. PMID: 34659580 |
| 6 |
Cucurbit leaf crumple virus Identified in Common Bean in Florida. Adkins S, et al. Plant Dis. 2009 Mar;93(3):320. doi: 10.1094/PDIS-93-3-0320B. PMID: 30764208 |
| 7 |
Yan ZY, et al. Mol Plant Pathol. 2021 Nov;22(11):1347-1357. doi: 10.1111/mpp.13115. Epub 2021 Aug 13. PMID: 34390124 |
| 8 |
Tomato dwarf leaf virus, a New World begomovirus infecting tomato in Argentina. Vaghi Medina CG, et al. Arch Virol. 2012 Oct;157(10):1975-80. doi: 10.1007/s00705-012-1355-2. Epub 2012 Jun 21. PMID: 22718220 |
| 9 |
A New Ilarvirus Isolated from Grapevine in Greece. Girgis SM, et al. Plant Dis. 2000 Dec;84(12):1345. doi: 10.1094/PDIS.2000.84.12.1345C. PMID: 30831890 |
| 10 |
Simmonds-Gordon RN, et al. Arch Virol. 2014 Oct;159(10):2815-8. doi: 10.1007/s00705-014-2112-5. Epub 2014 May 29. PMID: 24872185 |