Tobacco leaf rugose virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_002986915.1 |
| Isolate |
Cuba:Havana |
| Release date |
2018/8/26 |
| Submitter |
Dominguez,M., Ramos,P.L., Echemendia,A.L., Peral,R., Crespo,J., Andino,V., Pujol,M., Borroto,C. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGCCCCCCTTGGTGCCGTACTCCTTTGGTGCGCTTGTGGACCCACACCTAATAATGACAATTTTGTATCGTCCAATCATATTGCGTGTGACGAGCTTAGTTATCTGTGCCAACTTCTTCGGGACCAAGTTAAGAGTGTGGGTCTATAAAAGAATTTGAATTGGCGTTGTTCTTTATGTCAGAATGGTTAAGCGGGACGCTCCTTGGCGCTCGATGGCGGGTCCCTCCAAGGTTAGTCGCAACGCCAATTACTCCCCTCGTGGAGTTTCGGGCCCAAGAGTGAACAAGGCCCAAGCTTGGGTGAACAGGCCCATGTATAGGAAGCCCATGATCTACCGGATGTTGAGAGGCCCCGATATTCCTAAGGGCTGTGAAGGTCCTTGTAAGGTCCAATCTTATGAGCAGCGACATGACATCTCCCATGTCGGCAAGGTCATGTGCATATCCGATGTGACGCGTGGTAATGGTATTACCCATCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATCTTAGGTAAGATATGGATGGACGAAAACATCAAGTTGAAGAACCACACGAACAGCGTCATGTTCTGGTTGGTCAGGGACCGTAGACCCTATGGCACCCCTATGGACTTTGGCCAGGTGTTTAACATGTTCGACAACGAGCCTAGCACGGCTACCGTGAAGAACGATCTCCGCGATCGTTACCAGGTCATGCACAGGTTCTATGCCAAAGTCACAGGTGGACAGTACGCCAGCAACGAGCAGGCATTGGTTAGGCGATTCTGGAAGGTGAACAACCACGTGGTCTACAACCACCAGGAAGCTGGCAAGTACGAGAACCACACCGAGAACGCCCTTTTATTGTATATGGCATGTACTCATGCGTCTAACCCTGTGTATGCAACTCTGAAGATTCGGATCTATTTTTACGATTCGATCATGAATTAATAAATTTTGAATTTTATTGAATGATTTTCCAGTACATAATTTACATACGTTCTGTCCGTCGCGAATCGTACAGCTCTAATTACATTGTTAACTGAAATCACGCCTAACTGATCTAAATACAAGTTGACTAAGTGCCTAAACCTAGCTAAATATGTCTGCCCAGAAGCTGTCAGGGAAGTCGTCCAGACTTGGAAGTTCATGTACGCCTTGTGGAGATCCAACGCTCTCCTCAGGTTGTGGCTGAACCGTATCTGGATGTGGTATACTCTGGTCCTGGTGTACAGCGGGTCCTCTACCCTGTACATCCTGAAATAGAGGGGATTTTCTATCTCCCAGATATACACGCCATTCTCCGCCTGATGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGCCCGGTACAGCCTATGTGGAAGTAGATGGAGCACCCGCACTGTAAATCAATCCTGCGTCTCCTGATTGCCCTCCTTTTCTTGTATTGTCTGTGCGCCTTCTTGATAGAGGGGGGCTGTGAGGGTGATGAAGACCGCATTCTTGATGGTCCAGTTTCTGAGTGATGCGTTTTCCTCTTTGTCGAGGAAATCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATTCCTCCTTTAATTTGAACTGGCTTGCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATAATCCACTTCGTTTGAATAGACCCGGGCATTGAAGTCCAGGTGTCCACTGAGATAGTTATGCGGGCCCAATGAACGAGCCCACATGGTCTTTCCCGTCCTTGAATCACCTTCAACTATGATACTCAGTGGTCTTTCTGGCCGCGCAGAACCTCTTCCAAAATAATCATCCGCCCACTCTTGCATGTCTTCCGGAACGTTAGTGAACGAGGAGAGTTGAAACGGAGGAACCCATTGTTCTGGAGCCTTTGCGAATATCCTTTCTAAGTTGGAGCGGATGTTATGATTCTGCAGGACAAAATCTTTTGGCTGTTCTTCCCTTAAAACCGCCATGGCAGACTGAACAGAGTCTGCATTTAACGCCTTGGCATATGAATCATTAGCAGACTGCTTGCCTCCTCTAGCAGATCTGCCGTCGATCTGGAATTCTCCCCATTCCAGTGTATCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGACCAGATCGAAGAATCTGTTATTCTTGCACTGGTATTTTCCCTCGAACTGTATAAGCACATGGAGATGAGGCTCCCCATTCTCATGCAGTTCTCTGCAGATTTTGATGAACTTCTTGTTAACTGGTGTTTCTAGGTTTTGTAATTGGGAAAGTGCCTCTTCTTTTGGAAGAGAGCACTGCGGATAAGTGATGAAATTAGTTTTTGGCTGAGATTTGAAACGCTTGACTGATGGCATTTTTTGTAATAAGAAGGGAGACCCCAATTGAGCTCTCTCTAAACTTGCTATATGAATTGGGGTCTGGGGTCTCATTTATACTAGAAGGCTCAATAGAACTCTCAATCTCGTTCGCACACGTGCGGCCATCCGATATAATATT
Gene Information
|
NCBI Accession
|
YP_009508160.1
|
|
Location
|
197-952 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGGTTAAGCGGGACGCTCCTTGGCGCTCGATGGCGGGTCCCTCCAAGGTTAGTCGCAACGCCAATTACTCCCCTCGTGGAGTTTCGGGCCCAAGAGTGAACAAGGCCCAAGCTTGGGTGAACAGGCCCATGTATAGGAAGCCCATGATCTACCGGATGTTGAGAGGCCCCGATATTCCTAAGGGCTGTGAAGGTCCTTGTAAGGTCCAATCTTATGAGCAGCGACATGACATCTCCCATGTCGGCAAGGTCATGTGCATATCCGATGTGACGCGTGGTAATGGTATTACCCATCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATCTTAGGTAAGATATGGATGGACGAAAACATCAAGTTGAAGAACCACACGAACAGCGTCATGTTCTGGTTGGTCAGGGACCGTAGACCCTATGGCACCCCTATGGACTTTGGCCAGGTGTTTAACATGTTCGACAACGAGCCTAGCACGGCTACCGTGAAGAACGATCTCCGCGATCGTTACCAGGTCATGCACAGGTTCTATGCCAAAGTCACAGGTGGACAGTACGCCAGCAACGAGCAGGCATTGGTTAGGCGATTCTGGAAGGTGAACAACCACGTGGTCTACAACCACCAGGAAGCTGGCAAGTACGAGAACCACACCGAGAACGCCCTTTTATTGTATATGGCATGTACTCATGCGTCTAACCCTGTGTATGCAACTCTGAAGATTCGGATCTATTTTTACGATTCGATCATGAATTAA |
|
Protein Sequence
|
MVKRDAPWRSMAGPSKVSRNANYSPRGVSGPRVNKAQAWVNRPMYRKPMIYRMLRGPDIPKGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIMN |
|
NCBI Accession
|
YP_009508161.1
|
|
Location
|
949-1347 |
|
Gene Name
|
AC3 |
|
Protein Name
|
replication enhancement protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCACATCAGGCGGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAGGATGTACAGGGTAGAGGACCCGCTGTACACCAGGACCAGAGTATACCACATCCAGATACGGTTCAGCCACAACCTGAGGAGAGCGTTGGATCTCCACAAGGCGTACATGAACTTCCAAGTCTGGACGACTTCCCTGACAGCTTCTGGGCAGACATATTTAGCTAGGTTTAGGCACTTAGTCAACTTGTATTTAGATCAGTTAGGCGTGATTTCAGTTAACAATGTAATTAGAGCTGTACGATTCGCGACGGACAGAACGTATGTAAATTATGTACTGGAAAATCATTCAATAAAATTCAAAATTTATTAA |
|
Protein Sequence
|
MDSRTGELITAHQAENGVYIWEIENPLYFRMYRVEDPLYTRTRVYHIQIRFSHNLRRALDLHKAYMNFQVWTTSLTASGQTYLARFRHLVNLYLDQLGVISVNNVIRAVRFATDRTYVNYVLENHSIKFKIY |
|
NCBI Accession
|
YP_009508162.1
|
|
Location
|
1094-1486 |
|
Gene Name
|
AC2 |
|
Protein Name
|
transactivator protein |
|
Coding Region
|
ATGCGGTCTTCATCACCCTCACAGCCCCCCTCTATCAAGAAGGCGCACAGACAATACAAGAAAAGGAGGGCAATCAGGAGACGCAGGATTGATTTACAGTGCGGGTGCTCCATCTACTTCCACATAGGCTGTACCGGGCATGGATTCACGCACAGGGGAACTCATCACTGCACATCAGGCGGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAGGATGTACAGGGTAGAGGACCCGCTGTACACCAGGACCAGAGTATACCACATCCAGATACGGTTCAGCCACAACCTGAGGAGAGCGTTGGATCTCCACAAGGCGTACATGAACTTCCAAGTCTGGACGACTTCCCTGACAGCTTCTGGGCAGACATATTTAGCTAG |
|
Protein Sequence
|
MRSSSPSQPPSIKKAHRQYKKRRAIRRRRIDLQCGCSIYFHIGCTGHGFTHRGTHHCTSGGEWRVYLGDRKSPLFQDVQGRGPAVHQDQSIPHPDTVQPQPEESVGSPQGVHELPSLDDFPDSFWADIFS |
|
NCBI Accession
|
YP_009508163.1
|
|
Location
|
1395-2480 |
|
Gene Name
|
AC1 |
|
Protein Name
|
replication associated protein |
|
Coding Region
|
ATGCCATCAGTCAAGCGTTTCAAATCTCAGCCAAAAACTAATTTCATCACTTATCCGCAGTGCTCTCTTCCAAAAGAAGAGGCACTTTCCCAATTACAAAACCTAGAAACACCAGTTAACAAGAAGTTCATCAAAATCTGCAGAGAACTGCATGAGAATGGGGAGCCTCATCTCCATGTGCTTATACAGTTCGAGGGAAAATACCAGTGCAAGAATAACAGATTCTTCGATCTGGTCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTGGAATGGGGAGAATTCCAGATCGACGGCAGATCTGCTAGAGGAGGCAAGCAGTCTGCTAATGATTCATATGCCAAGGCGTTAAATGCAGACTCTGTTCAGTCTGCCATGGCGGTTTTAAGGGAAGAACAGCCAAAAGATTTTGTCCTGCAGAATCATAACATCCGCTCCAACTTAGAAAGGATATTCGCAAAGGCTCCAGAACAATGGGTTCCTCCGTTTCAACTCTCCTCGTTCACTAACGTTCCGGAAGACATGCAAGAGTGGGCGGATGATTATTTTGGAAGAGGTTCTGCGCGGCCAGAAAGACCACTGAGTATCATAGTTGAAGGTGATTCAAGGACGGGAAAGACCATGTGGGCTCGTTCATTGGGCCCGCATAACTATCTCAGTGGACACCTGGACTTCAATGCCCGGGTCTATTCAAACGAAGTGGATTATAACGTCATTGATGACGTCGCACCGCACTATCTAAAGCTAAAGCACTGGAAAGAACTTCTGGGGGCCCAGAAGGACTGGCAGTCAAATTGCAAATACGGCAAGCCAGTTCAAATTAAAGGAGGAATCCCATCAATCGTGCTTTGCAATCCTGGTGAGGGTGCCAGCTATAAAGATTTCCTCGACAAAGAGGAAAACGCATCACTCAGAAACTGGACCATCAAGAATGCGGTCTTCATCACCCTCACAGCCCCCCTCTATCAAGAAGGCGCACAGACAATACAAGAAAAGGAGGGCAATCAGGAGACGCAGGATTGA |
|
Protein Sequence
|
MPSVKRFKSQPKTNFITYPQCSLPKEEALSQLQNLETPVNKKFIKICRELHENGEPHLHVLIQFEGKYQCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGKQSANDSYAKALNADSVQSAMAVLREEQPKDFVLQNHNIRSNLERIFAKAPEQWVPPFQLSSFTNVPEDMQEWADDYFGRGSARPERPLSIIVEGDSRTGKTMWARSLGPHNYLSGHLDFNARVYSNEVDYNVIDDVAPHYLKLKHWKELLGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENASLRNWTIKNAVFITLTAPLYQEGAQTIQEKEGNQETQD |
|
NCBI Accession
|
YP_009508164.1
|
|
Location
|
2066-2329 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGAGAATGGGGAGCCTCATCTCCATGTGCTTATACAGTTCGAGGGAAAATACCAGTGCAAGAATAACAGATTCTTCGATCTGGTCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTGGAATGGGGAGAATTCCAGATCGACGGCAGATCTGCTAGAGGAGGCAAGCAGTCTGCTAATGATTCATATGCCAAGGCGTTAA |
|
Protein Sequence
|
MRMGSLISMCLYSSRENTSARITDSSIWSPQPGQHISIRTYRELNPAPTSSPTSTRTEIHWNGENSRSTADLLEEASSLLMIHMPRR |