Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_002986915.1 |
Isolate | Cuba:Havana |
Release date | 2018/8/26 |
Submitter | Dominguez,M., Ramos,P.L., Echemendia,A.L., Peral,R., Crespo,J., Andino,V., Pujol,M., Borroto,C. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_009508160.1 |
---|---|
Location | 197-952 |
Gene Name | AV1 |
Protein Name | coat protein |
Coding Region | ATGGTTAAGCGGGACGCTCCTTGGCGCTCGATGGCGGGTCCCTCCAAGGTTAGTCGCAACGCCAATTACTCCCCTCGTGGAGTTTCGGGCCCAAGAGTGAACAAGGCCCAAGCTTGGGTGAACAGGCCCATGTATAGGAAGCCCATGATCTACCGGATGTTGAGAGGCCCCGATATTCCTAAGGGCTGTGAAGGTCCTTGTAAGGTCCAATCTTATGAGCAGCGACATGACATCTCCCATGTCGGCAAGGTCATGTGCATATCCGATGTGACGCGTGGTAATGGTATTACCCATCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATCTTAGGTAAGATATGGATGGACGAAAACATCAAGTTGAAGAACCACACGAACAGCGTCATGTTCTGGTTGGTCAGGGACCGTAGACCCTATGGCACCCCTATGGACTTTGGCCAGGTGTTTAACATGTTCGACAACGAGCCTAGCACGGCTACCGTGAAGAACGATCTCCGCGATCGTTACCAGGTCATGCACAGGTTCTATGCCAAAGTCACAGGTGGACAGTACGCCAGCAACGAGCAGGCATTGGTTAGGCGATTCTGGAAGGTGAACAACCACGTGGTCTACAACCACCAGGAAGCTGGCAAGTACGAGAACCACACCGAGAACGCCCTTTTATTGTATATGGCATGTACTCATGCGTCTAACCCTGTGTATGCAACTCTGAAGATTCGGATCTATTTTTACGATTCGATCATGAATTAA |
Protein Sequence | MVKRDAPWRSMAGPSKVSRNANYSPRGVSGPRVNKAQAWVNRPMYRKPMIYRMLRGPDIPKGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIMN |
NCBI Accession | YP_009508161.1 |
---|---|
Location | 949-1347 |
Gene Name | AC3 |
Protein Name | replication enhancement protein |
Coding Region | ATGGATTCACGCACAGGGGAACTCATCACTGCACATCAGGCGGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAGGATGTACAGGGTAGAGGACCCGCTGTACACCAGGACCAGAGTATACCACATCCAGATACGGTTCAGCCACAACCTGAGGAGAGCGTTGGATCTCCACAAGGCGTACATGAACTTCCAAGTCTGGACGACTTCCCTGACAGCTTCTGGGCAGACATATTTAGCTAGGTTTAGGCACTTAGTCAACTTGTATTTAGATCAGTTAGGCGTGATTTCAGTTAACAATGTAATTAGAGCTGTACGATTCGCGACGGACAGAACGTATGTAAATTATGTACTGGAAAATCATTCAATAAAATTCAAAATTTATTAA |
Protein Sequence | MDSRTGELITAHQAENGVYIWEIENPLYFRMYRVEDPLYTRTRVYHIQIRFSHNLRRALDLHKAYMNFQVWTTSLTASGQTYLARFRHLVNLYLDQLGVISVNNVIRAVRFATDRTYVNYVLENHSIKFKIY |
NCBI Accession | YP_009508162.1 |
---|---|
Location | 1094-1486 |
Gene Name | AC2 |
Protein Name | transactivator protein |
Coding Region | ATGCGGTCTTCATCACCCTCACAGCCCCCCTCTATCAAGAAGGCGCACAGACAATACAAGAAAAGGAGGGCAATCAGGAGACGCAGGATTGATTTACAGTGCGGGTGCTCCATCTACTTCCACATAGGCTGTACCGGGCATGGATTCACGCACAGGGGAACTCATCACTGCACATCAGGCGGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAGGATGTACAGGGTAGAGGACCCGCTGTACACCAGGACCAGAGTATACCACATCCAGATACGGTTCAGCCACAACCTGAGGAGAGCGTTGGATCTCCACAAGGCGTACATGAACTTCCAAGTCTGGACGACTTCCCTGACAGCTTCTGGGCAGACATATTTAGCTAG |
Protein Sequence | MRSSSPSQPPSIKKAHRQYKKRRAIRRRRIDLQCGCSIYFHIGCTGHGFTHRGTHHCTSGGEWRVYLGDRKSPLFQDVQGRGPAVHQDQSIPHPDTVQPQPEESVGSPQGVHELPSLDDFPDSFWADIFS |
NCBI Accession | YP_009508163.1 |
---|---|
Location | 1395-2480 |
Gene Name | AC1 |
Protein Name | replication associated protein |
Coding Region | ATGCCATCAGTCAAGCGTTTCAAATCTCAGCCAAAAACTAATTTCATCACTTATCCGCAGTGCTCTCTTCCAAAAGAAGAGGCACTTTCCCAATTACAAAACCTAGAAACACCAGTTAACAAGAAGTTCATCAAAATCTGCAGAGAACTGCATGAGAATGGGGAGCCTCATCTCCATGTGCTTATACAGTTCGAGGGAAAATACCAGTGCAAGAATAACAGATTCTTCGATCTGGTCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTGGAATGGGGAGAATTCCAGATCGACGGCAGATCTGCTAGAGGAGGCAAGCAGTCTGCTAATGATTCATATGCCAAGGCGTTAAATGCAGACTCTGTTCAGTCTGCCATGGCGGTTTTAAGGGAAGAACAGCCAAAAGATTTTGTCCTGCAGAATCATAACATCCGCTCCAACTTAGAAAGGATATTCGCAAAGGCTCCAGAACAATGGGTTCCTCCGTTTCAACTCTCCTCGTTCACTAACGTTCCGGAAGACATGCAAGAGTGGGCGGATGATTATTTTGGAAGAGGTTCTGCGCGGCCAGAAAGACCACTGAGTATCATAGTTGAAGGTGATTCAAGGACGGGAAAGACCATGTGGGCTCGTTCATTGGGCCCGCATAACTATCTCAGTGGACACCTGGACTTCAATGCCCGGGTCTATTCAAACGAAGTGGATTATAACGTCATTGATGACGTCGCACCGCACTATCTAAAGCTAAAGCACTGGAAAGAACTTCTGGGGGCCCAGAAGGACTGGCAGTCAAATTGCAAATACGGCAAGCCAGTTCAAATTAAAGGAGGAATCCCATCAATCGTGCTTTGCAATCCTGGTGAGGGTGCCAGCTATAAAGATTTCCTCGACAAAGAGGAAAACGCATCACTCAGAAACTGGACCATCAAGAATGCGGTCTTCATCACCCTCACAGCCCCCCTCTATCAAGAAGGCGCACAGACAATACAAGAAAAGGAGGGCAATCAGGAGACGCAGGATTGA |
Protein Sequence | MPSVKRFKSQPKTNFITYPQCSLPKEEALSQLQNLETPVNKKFIKICRELHENGEPHLHVLIQFEGKYQCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGKQSANDSYAKALNADSVQSAMAVLREEQPKDFVLQNHNIRSNLERIFAKAPEQWVPPFQLSSFTNVPEDMQEWADDYFGRGSARPERPLSIIVEGDSRTGKTMWARSLGPHNYLSGHLDFNARVYSNEVDYNVIDDVAPHYLKLKHWKELLGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENASLRNWTIKNAVFITLTAPLYQEGAQTIQEKEGNQETQD |
NCBI Accession | YP_009508164.1 |
---|---|
Location | 2066-2329 |
Gene Name | AC4 |
Protein Name | AC4 protein |
Coding Region | ATGAGAATGGGGAGCCTCATCTCCATGTGCTTATACAGTTCGAGGGAAAATACCAGTGCAAGAATAACAGATTCTTCGATCTGGTCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTGGAATGGGGAGAATTCCAGATCGACGGCAGATCTGCTAGAGGAGGCAAGCAGTCTGCTAATGATTCATATGCCAAGGCGTTAA |
Protein Sequence | MRMGSLISMCLYSSRENTSARITDSSIWSPQPGQHISIRTYRELNPAPTSSPTSTRTEIHWNGENSRSTADLLEEASSLLMIHMPRR |
1 |
Zhang S, et al. Mol Plant Pathol. 2022 Sep;23(9):1262-1277. doi: 10.1111/mpp.13229. Epub 2022 May 22. PMID: 35598295 |
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2 |
Domínguez M, et al. Plant Dis. 2002 Sep;86(9):1050. doi: 10.1094/PDIS.2002.86.9.1050A. PMID: 30818540 |
3 |
The N gene protects tomato plants from tomato brown rugose fruit virus infection. Zhou J, et al. Plant Biotechnol J. 2025 Oct;23(10):4339-4349. doi: 10.1111/pbi.70237. Epub 2025 Jul 2. PMID: 40601793 |
4 |
Souza-Dias JAC, et al. Plant Dis. 2008 Mar;92(3):487. doi: 10.1094/PDIS-92-3-0487C. PMID: 30769698 |
5 |
Identification and management of tomato brown rugose fruit virus in greenhouses in Mexico. Vargas-Mejía P, et al. Arch Virol. 2023 Apr 12;168(5):135. doi: 10.1007/s00705-023-05757-y. PMID: 37043016 |
6 |
Nourinejhad Zarghani S, et al. Plants (Basel). 2022 Dec 9;11(24):3443. doi: 10.3390/plants11243443. PMID: 36559554 |
7 |
Yan ZY, et al. Mol Plant Pathol. 2021 Nov;22(11):1347-1357. doi: 10.1111/mpp.13115. Epub 2021 Aug 13. PMID: 34390124 |
8 |
Jewehan A, et al. J Plant Dis Prot (2006). 2022;129(1):117-123. doi: 10.1007/s41348-021-00535-x. Epub 2021 Oct 9. PMID: 34659580 |
9 |
Leaf Plasmodesmata Respond Differently to TMV, ToBRFV and TYLCV Infection. Kutsher Y, et al. Plants (Basel). 2021 Jul 14;10(7):1442. doi: 10.3390/plants10071442. PMID: 34371642 |
10 |
Yang J, et al. Biology (Basel). 2025 Jun 5;14(6):656. doi: 10.3390/biology14060656. PMID: 40563907 |