Tobacco leaf curl Thailand virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000871705.1
Isolate Thailand
Release date 2015/2/13
Submitter Knierim,D., Maiss,E.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_009553
TAATATTACCGGATGGCCGCGATTTTTTTAAAGTGGGCCCCCTGATGTGATATGTCCCCCAATAAAAACGCTCCCTCAAAGCCTATTTAATTCAAATCCATTATAAATACTTGGTCCCTACGTTTTTCAATTAAAGACATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGATTTAGGTGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACCTATTCGCCTGACACATTAGGGCACGATTTAATTAGGGATTTAATTTCTGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGTCGCCGTCTGAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCACTGTCCGCGTCACAAAAGCAAGATCATGGACGAACAGGCCCATGAACAGAAAGCCCAAGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTTCAATCGTTTGATGCTAAGAACGATATTGGTCACATGGGCAAGGTCTTATGTTTGTCCGACGTTACCCGTGGTATTGGGCTTACCCATCGAGTTGGCAAGCGTTTCTGTGTCAAATCACTTTATTTTGTTGGCAAGATCTGGATGGATGAAAATATTAAGGTTAAGAACCACACTAACACCGTTTTATTCTGGATAGTTAGAGATCGGCGTCCTACTGGAACGCCTAATGATTTTCAGCAGGTCTTTAATGTATATGATAATGAACCCAGCACTGCTACTGTGAAGAACGACCAGCGTGATCGTTACCAGGTTTTAAGGAGGTTCCAGGCAACGGTGACTGGTGGACAATATGCAGCGAAGGAGCAGGCGATTATTAGAAAGTTTTATCGTGTTAATAATTATGTAGTTTACAATCACCAGGAAGCTGGGAAGTACGAGAACCATACTGAAAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACTTTGAAAGTCAGAAGTTATTTCTATGACTCAGTGACGAATTAATAAAGATTGAATTTTATTATATTAGACTGTCTTACATATTCTGTCTTTTCCAATACATCCCATAATACATGATCACATGCTCTAATTACATTGTTAATACTAATTACACCCAAATTATCTAAATATTTCATACATTGAACCCTAAATACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGTCCAGATCTGGAAGATTAGAAAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGGTTGAACTGTATTTGGATCTGTATGATGTCCTGATTGGTGTTGAATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATAGAGGGGATTTCTGATCGTCCAAGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGTGAATCCATGATTTGCGCAGTCTATGCCTAAGTAATATGAGCACCCGCACGTTAGATCAACTCTCCTCCTGCGAACTGGTTTCTTCTTGGCTATTCTGTGTTGCACTTTGATTGGAACCTGAGTACAATGGGCTGTTGAGGGTGATGAATTCCGCATTCTTTAATGCCCAATATTTTAATGCTGAGTTTTTCTCTTCATCCAAGAATTCTTTATAGCTAGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCGACGTCATCGATGACGTTATACCAGGCATCATTATTGTATACCTTTGGACTGAGATCAAGGTGACCACAGAGATAATTATGTGGGCCTAATGATCTTGCCCACATCGTCTTTCCTGTTCTACTATCACCTTCAATTACTATACTCATGGGTCTCAATGGCCGCGCAGCGGCACTGACGACATTCTCGGCAGCCCATTCCTCAAGTTCCTCTGGAACTTGATCGAAAGAAGAAGATAAAAAAGGAGAAATATATTCCTCTATTGGAGGAGTAAAAATCCTATCTAAATTAGAATTTAAATTATGAAACTGTAAAACAAAATCTTTAGGAGCCTTCTCCTTTAATATATTGAGGGCCGCTGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCCGTCTTTTTCCATGTATGCTTTAACATCTGTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGATGTGAGATCGAAGAATCTGTTGTTTTGGCATTTGAATTTGCCTTCGAACTGGATGAGGACATGCAGGTGAGGAGACCCATCTTCGTGTAGTTCCCTGCAAATACGTATGAATAATTTATTAGTCGGTGTTGATAGGGCTGAGATTTGGGAAAGTGCCTCTTCTTTAGTAAGGGAGCACTGTGGATAAGTGAGGAAATAATTCTTGGCATTTATAAAAAATTTTTTTGGTTGAGGCATATTGACTGGTCAATCGGGTCCTCTCAAACTTGGCTATGCAATCGGGGAATGGGTCCTTATTTATAGTTGAGGACCTAAATGGCAAAGTCGTAAATTCCAAAAGAAATTCAAAATTTGAATTTTGAATCCAAAAGCGGCCATCCGAT

Gene Information

NCBI Accession YP_001285869.1
Location 139-495
Protein Name V2
Coding Region ATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGATTTAGGTGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACCTATTCGCCTGACACATTAGGGCACGATTTAATTAGGGATTTAATTTCTGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGTCGCCGTCTGAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCACTGTCCGCGTCACAAAAGCAAGATCATGGACGAACAGGCCCATGAACAGAAAGCCCAAGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAG
Protein Sequence MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGHDLIRDLISVIRARNYVEATSRYNHFHARLEGTSPSELRQPICEPCCCPHCPRHKSKIMDEQAHEQKAQDVQDVQKSRCP

NCBI Accession YP_001285870.1
Location 299-1069
Protein Name V1
Coding Region ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGTCGCCGTCTGAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCACTGTCCGCGTCACAAAAGCAAGATCATGGACGAACAGGCCCATGAACAGAAAGCCCAAGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTTCAATCGTTTGATGCTAAGAACGATATTGGTCACATGGGCAAGGTCTTATGTTTGTCCGACGTTACCCGTGGTATTGGGCTTACCCATCGAGTTGGCAAGCGTTTCTGTGTCAAATCACTTTATTTTGTTGGCAAGATCTGGATGGATGAAAATATTAAGGTTAAGAACCACACTAACACCGTTTTATTCTGGATAGTTAGAGATCGGCGTCCTACTGGAACGCCTAATGATTTTCAGCAGGTCTTTAATGTATATGATAATGAACCCAGCACTGCTACTGTGAAGAACGACCAGCGTGATCGTTACCAGGTTTTAAGGAGGTTCCAGGCAACGGTGACTGGTGGACAATATGCAGCGAAGGAGCAGGCGATTATTAGAAAGTTTTATCGTGTTAATAATTATGTAGTTTACAATCACCAGGAAGCTGGGAAGTACGAGAACCATACTGAAAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACTTTGAAAGTCAGAAGTTATTTCTATGACTCAGTGACGAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPTVRVTKARSWTNRPMNRKPKMYRMYRSPDVPRGCEGPCKVQSFDAKNDIGHMGKVLCLSDVTRGIGLTHRVGKRFCVKSLYFVGKIWMDENIKVKNHTNTVLFWIVRDRRPTGTPNDFQQVFNVYDNEPSTATVKNDQRDRYQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKVRSYFYDSVTN

NCBI Accession YP_001285871.1
Location 833-1003
Protein Name C5
Coding Region ATGAGTACATGCCATATACAACAACAAAGCATTTTCAGTATGGTTCTCGTACTTCCCAGCTTCCTGGTGATTGTAAACTACATAATTATTAACACGATAAAACTTTCTAATAATCGCCTGCTCCTTCGCTGCATATTGTCCACCAGTCACCGTTGCCTGGAACCTCCTTAA
Protein Sequence MSTCHIQQQSIFSMVLVLPSFLVIVNYIIINTIKLSNNRLLLRCILSTSHRCLEPP

NCBI Accession YP_001285872.1
Location 1066-1470
Protein Name C3
Coding Region ATGGATTCACGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAGTGGCGTGTATACTTGGACGATCAGAAATCCCCTCTATTTCAAGATAACCAAGCACCACGAGAGACCATTCAACACCAATCAGGACATCATACAGATCCAAATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTAATCTTCCAGATCTGGACTCGCTTACAACCTCAGACTTGGCGTTTCTTAAGAGTATTTAGGGTTCAATGTATGAAATATTTAGATAATTTGGGTGTAATTAGTATTAACAATGTAATTAGAGCATGTGATCATGTATTATGGGATGTATTGGAAAAGACAGAATATGTAAGACAGTCTAATATAATAAAATTCAATCTTTATTAA
Protein Sequence MDSRTGELLTATQCESGVYTWTIRNPLYFKITKHHERPFNTNQDIIQIQIQFNHNLRKALGIHQCFLIFQIWTRLQPQTWRFLRVFRVQCMKYLDNLGVISINNVIRACDHVLWDVLEKTEYVRQSNIIKFNLY

NCBI Accession YP_001285873.1
Location 1211-1618
Protein Name C2
Coding Region ATGCGGAATTCATCACCCTCAACAGCCCATTGTACTCAGGTTCCAATCAAAGTGCAACACAGAATAGCCAAGAAGAAACCAGTTCGCAGGAGGAGAGTTGATCTAACGTGCGGGTGCTCATATTACTTAGGCATAGACTGCGCAAATCATGGATTCACGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAGTGGCGTGTATACTTGGACGATCAGAAATCCCCTCTATTTCAAGATAACCAAGCACCACGAGAGACCATTCAACACCAATCAGGACATCATACAGATCCAAATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTAATCTTCCAGATCTGGACTCGCTTACAACCTCAGACTTGGCGTTTCTTAAGAGTATTTAG
Protein Sequence MRNSSPSTAHCTQVPIKVQHRIAKKKPVRRRRVDLTCGCSYYLGIDCANHGFTHRGITHCNSMREWRVYLDDQKSPLFQDNQAPRETIQHQSGHHTDPNTVQPQPEESVGNTPVFSNLPDLDSLTTSDLAFLKSI

NCBI Accession YP_001285874.1
Location 1518-2606
Protein Name C1
Coding Region ATGCCTCAACCAAAAAAATTTTTTATAAATGCCAAGAATTATTTCCTCACTTATCCACAGTGCTCCCTTACTAAAGAAGAGGCACTTTCCCAAATCTCAGCCCTATCAACACCGACTAATAAATTATTCATACGTATTTGCAGGGAACTACACGAAGATGGGTCTCCTCACCTGCATGTCCTCATCCAGTTCGAAGGCAAATTCAAATGCCAAAACAACAGATTCTTCGATCTCACATCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTTAAAGCATACATGGAAAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCAGCGGCCCTCAATATATTAAAGGAGAAGGCTCCTAAAGATTTTGTTTTACAGTTTCATAATTTAAATTCTAATTTAGATAGGATTTTTACTCCTCCAATAGAGGAATATATTTCTCCTTTTTTATCTTCTTCTTTCGATCAAGTTCCAGAGGAACTTGAGGAATGGGCTGCCGAGAATGTCGTCAGTGCCGCTGCGCGGCCATTGAGACCCATGAGTATAGTAATTGAAGGTGATAGTAGAACAGGAAAGACGATGTGGGCAAGATCATTAGGCCCACATAATTATCTCTGTGGTCACCTTGATCTCAGTCCAAAGGTATACAATAATGATGCCTGGTATAACGTCATCGATGACGTCGACCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACTAAATACGGAAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCCAACTCTAGCTATAAAGAATTCTTGGATGAAGAGAAAAACTCAGCATTAAAATATTGGGCATTAAAGAATGCGGAATTCATCACCCTCAACAGCCCATTGTACTCAGGTTCCAATCAAAGTGCAACACAGAATAGCCAAGAAGAAACCAGTTCGCAGGAGGAGAGTTGA
Protein Sequence MPQPKKFFINAKNYFLTYPQCSLTKEEALSQISALSTPTNKLFIRICRELHEDGSPHLHVLIQFEGKFKCQNNRFFDLTSPSRSAHFHPNIQGAKSSTDVKAYMEKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILKEKAPKDFVLQFHNLNSNLDRIFTPPIEEYISPFLSSSFDQVPEELEEWAAENVVSAAARPLRPMSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKYWALKNAEFITLNSPLYSGSNQSATQNSQEETSSQEES

NCBI Accession YP_001285875.1
Location 2156-2449
Protein Name C4
Coding Region ATGGGTCTCCTCACCTGCATGTCCTCATCCAGTTCGAAGGCAAATTCAAATGCCAAAACAACAGATTCTTCGATCTCACATCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTTAAAGCATACATGGAAAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCAGCGGCCCTCAATATATTAA
Protein Sequence MGLLTCMSSSSSKANSNAKTTDSSISHPQAGQHISIRTFRELKAQQMLKHTWKKTETCLIMEFSRSMEDQLEEVANLPTTHMPRQSIQGPKQRPSIY

References More References in PubMed

1

Identification of the determinant of tomato yellow leaf curl Kanchanaburi virus infectivity in tomato.

An JW, et al.  Virus Res. 2021 Jan 2;291:198192. doi: 10.1016/j.virusres.2020.198192. Epub 2020 Oct 13.

PMID: 33058965
2

Application of Phi29 DNA polymerase in identification and full-length clone inoculation of tomato yellow leaf curl Thailand virus and tobacco leaf curl Thailand virus.

Knierim D, et al.  Arch Virol. 2007;152(5):941-54. doi: 10.1007/s00705-006-0914-9. Epub 2007 Jan 18.

PMID: 17226067
3

Development and application of triple antibody sandwich enzyme-linked immunosorbent assays for begomovirus detection using monoclonal antibodies against Tomato yellow leaf curl Thailand virus.

Seepiban C, et al.  Virol J. 2017 May 30;14(1):99. doi: 10.1186/s12985-017-0763-z.

PMID: 28558726
4

Tomato yellow leaf curl viruses: menage a trois between the virus complex, the plant and the whitefly vector.

Díaz-Pendón JA, et al.  Mol Plant Pathol. 2010 Jul;11(4):441-50. doi: 10.1111/j.1364-3703.2010.00618.x.

PMID: 20618703
5

Engineering Plant Resistance to Tomato Yellow Leaf Curl Thailand Virus Using a Phloem-Specific Promoter Expressing Hairpin RNA.

Tzean Y, et al.  Mol Plant Microbe Interact. 2020 Jan;33(1):87-97. doi: 10.1094/MPMI-06-19-0158-R. Epub 2019 Nov 21.

PMID: 31638467
6

Transreplication of a Tomato yellow leaf curl Thailand virus DNA-B and replication of a DNAbeta component by Tomato leaf curl Vietnam virus and Tomato yellow leaf curl Vietnam virus.

Blawid R, et al.  Virus Res. 2008 Sep;136(1-2):107-17. doi: 10.1016/j.virusres.2008.04.025. Epub 2008 Jun 11.

PMID: 18550192
7

Tomato yellow leaf curl Thailand virus-[Y72] from Yunnan is a monopartite begomovirus associated with DNAbeta.

Guo W, et al.  Virus Genes. 2009 Apr;38(2):328-33. doi: 10.1007/s11262-009-0327-4. Epub 2009 Jan 23.

PMID: 19165588
8

Virus-virus interactions alter the mechanical transmissibility and host range of begomoviruses.

Chang HH, et al.  Front Plant Sci. 2023 Jun 2;14:1092998. doi: 10.3389/fpls.2023.1092998. eCollection 2023.

PMID: 37332697
9

Incidence and Molecular Identification of Begomoviruses Infecting Tomato and Pepper in Myanmar.

Kwak HR, et al.  Plants (Basel). 2022 Apr 10;11(8):1031. doi: 10.3390/plants11081031.

PMID: 35448759
10

Molecular characterization of tomato-infecting begomoviruses in Yunnan, China.

Li ZH, et al.  Arch Virol. 2004 Sep;149(9):1721-32. doi: 10.1007/s00705-004-0334-7.

PMID: 15593415