Tobacco leaf curl Thailand virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_000871705.1 |
| Isolate | Thailand |
| Release date | 2015/2/13 |
| Submitter | Knierim,D., Maiss,E. |
| Host | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_009553
TAATATTACCGGATGGCCGCGATTTTTTTAAAGTGGGCCCCCTGATGTGATATGTCCCCCAATAAAAACGCTCCCTCAAAGCCTATTTAATTCAAATCCATTATAAATACTTGGTCCCTACGTTTTTCAATTAAAGACATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGATTTAGGTGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACCTATTCGCCTGACACATTAGGGCACGATTTAATTAGGGATTTAATTTCTGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGTCGCCGTCTGAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCACTGTCCGCGTCACAAAAGCAAGATCATGGACGAACAGGCCCATGAACAGAAAGCCCAAGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTTCAATCGTTTGATGCTAAGAACGATATTGGTCACATGGGCAAGGTCTTATGTTTGTCCGACGTTACCCGTGGTATTGGGCTTACCCATCGAGTTGGCAAGCGTTTCTGTGTCAAATCACTTTATTTTGTTGGCAAGATCTGGATGGATGAAAATATTAAGGTTAAGAACCACACTAACACCGTTTTATTCTGGATAGTTAGAGATCGGCGTCCTACTGGAACGCCTAATGATTTTCAGCAGGTCTTTAATGTATATGATAATGAACCCAGCACTGCTACTGTGAAGAACGACCAGCGTGATCGTTACCAGGTTTTAAGGAGGTTCCAGGCAACGGTGACTGGTGGACAATATGCAGCGAAGGAGCAGGCGATTATTAGAAAGTTTTATCGTGTTAATAATTATGTAGTTTACAATCACCAGGAAGCTGGGAAGTACGAGAACCATACTGAAAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACTTTGAAAGTCAGAAGTTATTTCTATGACTCAGTGACGAATTAATAAAGATTGAATTTTATTATATTAGACTGTCTTACATATTCTGTCTTTTCCAATACATCCCATAATACATGATCACATGCTCTAATTACATTGTTAATACTAATTACACCCAAATTATCTAAATATTTCATACATTGAACCCTAAATACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGTCCAGATCTGGAAGATTAGAAAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGGTTGAACTGTATTTGGATCTGTATGATGTCCTGATTGGTGTTGAATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATAGAGGGGATTTCTGATCGTCCAAGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGTGAATCCATGATTTGCGCAGTCTATGCCTAAGTAATATGAGCACCCGCACGTTAGATCAACTCTCCTCCTGCGAACTGGTTTCTTCTTGGCTATTCTGTGTTGCACTTTGATTGGAACCTGAGTACAATGGGCTGTTGAGGGTGATGAATTCCGCATTCTTTAATGCCCAATATTTTAATGCTGAGTTTTTCTCTTCATCCAAGAATTCTTTATAGCTAGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCGACGTCATCGATGACGTTATACCAGGCATCATTATTGTATACCTTTGGACTGAGATCAAGGTGACCACAGAGATAATTATGTGGGCCTAATGATCTTGCCCACATCGTCTTTCCTGTTCTACTATCACCTTCAATTACTATACTCATGGGTCTCAATGGCCGCGCAGCGGCACTGACGACATTCTCGGCAGCCCATTCCTCAAGTTCCTCTGGAACTTGATCGAAAGAAGAAGATAAAAAAGGAGAAATATATTCCTCTATTGGAGGAGTAAAAATCCTATCTAAATTAGAATTTAAATTATGAAACTGTAAAACAAAATCTTTAGGAGCCTTCTCCTTTAATATATTGAGGGCCGCTGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCCGTCTTTTTCCATGTATGCTTTAACATCTGTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGATGTGAGATCGAAGAATCTGTTGTTTTGGCATTTGAATTTGCCTTCGAACTGGATGAGGACATGCAGGTGAGGAGACCCATCTTCGTGTAGTTCCCTGCAAATACGTATGAATAATTTATTAGTCGGTGTTGATAGGGCTGAGATTTGGGAAAGTGCCTCTTCTTTAGTAAGGGAGCACTGTGGATAAGTGAGGAAATAATTCTTGGCATTTATAAAAAATTTTTTTGGTTGAGGCATATTGACTGGTCAATCGGGTCCTCTCAAACTTGGCTATGCAATCGGGGAATGGGTCCTTATTTATAGTTGAGGACCTAAATGGCAAAGTCGTAAATTCCAAAAGAAATTCAAAATTTGAATTTTGAATCCAAAAGCGGCCATCCGAT
Gene Information
| NCBI Accession | YP_001285869.1 |
|---|---|
| Location | 139-495 |
| Protein Name | V2 |
| Coding Region | ATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGATTTAGGTGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACCTATTCGCCTGACACATTAGGGCACGATTTAATTAGGGATTTAATTTCTGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGTCGCCGTCTGAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCACTGTCCGCGTCACAAAAGCAAGATCATGGACGAACAGGCCCATGAACAGAAAGCCCAAGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAG |
| Protein Sequence | MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGHDLIRDLISVIRARNYVEATSRYNHFHARLEGTSPSELRQPICEPCCCPHCPRHKSKIMDEQAHEQKAQDVQDVQKSRCP |
| NCBI Accession | YP_001285870.1 |
|---|---|
| Location | 299-1069 |
| Protein Name | V1 |
| Coding Region | ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGTCGCCGTCTGAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCACTGTCCGCGTCACAAAAGCAAGATCATGGACGAACAGGCCCATGAACAGAAAGCCCAAGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTTCAATCGTTTGATGCTAAGAACGATATTGGTCACATGGGCAAGGTCTTATGTTTGTCCGACGTTACCCGTGGTATTGGGCTTACCCATCGAGTTGGCAAGCGTTTCTGTGTCAAATCACTTTATTTTGTTGGCAAGATCTGGATGGATGAAAATATTAAGGTTAAGAACCACACTAACACCGTTTTATTCTGGATAGTTAGAGATCGGCGTCCTACTGGAACGCCTAATGATTTTCAGCAGGTCTTTAATGTATATGATAATGAACCCAGCACTGCTACTGTGAAGAACGACCAGCGTGATCGTTACCAGGTTTTAAGGAGGTTCCAGGCAACGGTGACTGGTGGACAATATGCAGCGAAGGAGCAGGCGATTATTAGAAAGTTTTATCGTGTTAATAATTATGTAGTTTACAATCACCAGGAAGCTGGGAAGTACGAGAACCATACTGAAAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACTTTGAAAGTCAGAAGTTATTTCTATGACTCAGTGACGAATTAA |
| Protein Sequence | MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPTVRVTKARSWTNRPMNRKPKMYRMYRSPDVPRGCEGPCKVQSFDAKNDIGHMGKVLCLSDVTRGIGLTHRVGKRFCVKSLYFVGKIWMDENIKVKNHTNTVLFWIVRDRRPTGTPNDFQQVFNVYDNEPSTATVKNDQRDRYQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKVRSYFYDSVTN |
| NCBI Accession | YP_001285871.1 |
|---|---|
| Location | 833-1003 |
| Protein Name | C5 |
| Coding Region | ATGAGTACATGCCATATACAACAACAAAGCATTTTCAGTATGGTTCTCGTACTTCCCAGCTTCCTGGTGATTGTAAACTACATAATTATTAACACGATAAAACTTTCTAATAATCGCCTGCTCCTTCGCTGCATATTGTCCACCAGTCACCGTTGCCTGGAACCTCCTTAA |
| Protein Sequence | MSTCHIQQQSIFSMVLVLPSFLVIVNYIIINTIKLSNNRLLLRCILSTSHRCLEPP |
| NCBI Accession | YP_001285872.1 |
|---|---|
| Location | 1066-1470 |
| Protein Name | C3 |
| Coding Region | ATGGATTCACGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAGTGGCGTGTATACTTGGACGATCAGAAATCCCCTCTATTTCAAGATAACCAAGCACCACGAGAGACCATTCAACACCAATCAGGACATCATACAGATCCAAATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTAATCTTCCAGATCTGGACTCGCTTACAACCTCAGACTTGGCGTTTCTTAAGAGTATTTAGGGTTCAATGTATGAAATATTTAGATAATTTGGGTGTAATTAGTATTAACAATGTAATTAGAGCATGTGATCATGTATTATGGGATGTATTGGAAAAGACAGAATATGTAAGACAGTCTAATATAATAAAATTCAATCTTTATTAA |
| Protein Sequence | MDSRTGELLTATQCESGVYTWTIRNPLYFKITKHHERPFNTNQDIIQIQIQFNHNLRKALGIHQCFLIFQIWTRLQPQTWRFLRVFRVQCMKYLDNLGVISINNVIRACDHVLWDVLEKTEYVRQSNIIKFNLY |
| NCBI Accession | YP_001285873.1 |
|---|---|
| Location | 1211-1618 |
| Protein Name | C2 |
| Coding Region | ATGCGGAATTCATCACCCTCAACAGCCCATTGTACTCAGGTTCCAATCAAAGTGCAACACAGAATAGCCAAGAAGAAACCAGTTCGCAGGAGGAGAGTTGATCTAACGTGCGGGTGCTCATATTACTTAGGCATAGACTGCGCAAATCATGGATTCACGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAGTGGCGTGTATACTTGGACGATCAGAAATCCCCTCTATTTCAAGATAACCAAGCACCACGAGAGACCATTCAACACCAATCAGGACATCATACAGATCCAAATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTAATCTTCCAGATCTGGACTCGCTTACAACCTCAGACTTGGCGTTTCTTAAGAGTATTTAG |
| Protein Sequence | MRNSSPSTAHCTQVPIKVQHRIAKKKPVRRRRVDLTCGCSYYLGIDCANHGFTHRGITHCNSMREWRVYLDDQKSPLFQDNQAPRETIQHQSGHHTDPNTVQPQPEESVGNTPVFSNLPDLDSLTTSDLAFLKSI |
| NCBI Accession | YP_001285874.1 |
|---|---|
| Location | 1518-2606 |
| Protein Name | C1 |
| Coding Region | ATGCCTCAACCAAAAAAATTTTTTATAAATGCCAAGAATTATTTCCTCACTTATCCACAGTGCTCCCTTACTAAAGAAGAGGCACTTTCCCAAATCTCAGCCCTATCAACACCGACTAATAAATTATTCATACGTATTTGCAGGGAACTACACGAAGATGGGTCTCCTCACCTGCATGTCCTCATCCAGTTCGAAGGCAAATTCAAATGCCAAAACAACAGATTCTTCGATCTCACATCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTTAAAGCATACATGGAAAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCAGCGGCCCTCAATATATTAAAGGAGAAGGCTCCTAAAGATTTTGTTTTACAGTTTCATAATTTAAATTCTAATTTAGATAGGATTTTTACTCCTCCAATAGAGGAATATATTTCTCCTTTTTTATCTTCTTCTTTCGATCAAGTTCCAGAGGAACTTGAGGAATGGGCTGCCGAGAATGTCGTCAGTGCCGCTGCGCGGCCATTGAGACCCATGAGTATAGTAATTGAAGGTGATAGTAGAACAGGAAAGACGATGTGGGCAAGATCATTAGGCCCACATAATTATCTCTGTGGTCACCTTGATCTCAGTCCAAAGGTATACAATAATGATGCCTGGTATAACGTCATCGATGACGTCGACCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACTAAATACGGAAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCCAACTCTAGCTATAAAGAATTCTTGGATGAAGAGAAAAACTCAGCATTAAAATATTGGGCATTAAAGAATGCGGAATTCATCACCCTCAACAGCCCATTGTACTCAGGTTCCAATCAAAGTGCAACACAGAATAGCCAAGAAGAAACCAGTTCGCAGGAGGAGAGTTGA |
| Protein Sequence | MPQPKKFFINAKNYFLTYPQCSLTKEEALSQISALSTPTNKLFIRICRELHEDGSPHLHVLIQFEGKFKCQNNRFFDLTSPSRSAHFHPNIQGAKSSTDVKAYMEKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILKEKAPKDFVLQFHNLNSNLDRIFTPPIEEYISPFLSSSFDQVPEELEEWAAENVVSAAARPLRPMSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKYWALKNAEFITLNSPLYSGSNQSATQNSQEETSSQEES |
| NCBI Accession | YP_001285875.1 |
|---|---|
| Location | 2156-2449 |
| Protein Name | C4 |
| Coding Region | ATGGGTCTCCTCACCTGCATGTCCTCATCCAGTTCGAAGGCAAATTCAAATGCCAAAACAACAGATTCTTCGATCTCACATCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTTAAAGCATACATGGAAAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCAGCGGCCCTCAATATATTAA |
| Protein Sequence | MGLLTCMSSSSSKANSNAKTTDSSISHPQAGQHISIRTFRELKAQQMLKHTWKKTETCLIMEFSRSMEDQLEEVANLPTTHMPRQSIQGPKQRPSIY |
References More References in PubMed
| 1 |
Seepiban C, et al. Virol J. 2017 May 30;14(1):99. doi: 10.1186/s12985-017-0763-z. PMID: 28558726 |
|---|---|
| 2 |
Knierim D, et al. Arch Virol. 2007;152(5):941-54. doi: 10.1007/s00705-006-0914-9. Epub 2007 Jan 18. PMID: 17226067 |
| 3 |
Blawid R, et al. Virus Res. 2008 Sep;136(1-2):107-17. doi: 10.1016/j.virusres.2008.04.025. Epub 2008 Jun 11. PMID: 18550192 |
| 4 |
An JW, et al. Virus Res. 2021 Jan 2;291:198192. doi: 10.1016/j.virusres.2020.198192. Epub 2020 Oct 13. PMID: 33058965 |
| 5 |
Guo W, et al. Virus Genes. 2009 Apr;38(2):328-33. doi: 10.1007/s11262-009-0327-4. Epub 2009 Jan 23. PMID: 19165588 |
| 6 |
Díaz-Pendón JA, et al. Mol Plant Pathol. 2010 Jul;11(4):441-50. doi: 10.1111/j.1364-3703.2010.00618.x. PMID: 20618703 |
| 7 |
Incidence and Molecular Identification of Begomoviruses Infecting Tomato and Pepper in Myanmar. Kwak HR, et al. Plants (Basel). 2022 Apr 10;11(8):1031. doi: 10.3390/plants11081031. PMID: 35448759 |
| 8 |
Zhao L, et al. Arch Virol. 2018 Jun;163(6):1695-1699. doi: 10.1007/s00705-018-3762-5. Epub 2018 Feb 12. PMID: 29435710 |
| 9 |
Molecular characterization of tomato-infecting begomoviruses in Yunnan, China. Li ZH, et al. Arch Virol. 2004 Sep;149(9):1721-32. doi: 10.1007/s00705-004-0334-7. PMID: 15593415 |
| 10 |
Molecular characterization of a distinct begomovirus infecting tobacco in Yunnan, China. Zhou XP, et al. Arch Virol. 2001 Aug;146(8):1599-606. doi: 10.1007/s007050170081. PMID: 11676420 |