Tobacco leaf curl Thailand virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000871705.1 |
| Isolate |
Thailand |
| Release date |
2015/2/13 |
| Submitter |
Knierim,D., Maiss,E. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
TAATATTACCGGATGGCCGCGATTTTTTTAAAGTGGGCCCCCTGATGTGATATGTCCCCCAATAAAAACGCTCCCTCAAAGCCTATTTAATTCAAATCCATTATAAATACTTGGTCCCTACGTTTTTCAATTAAAGACATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGATTTAGGTGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACCTATTCGCCTGACACATTAGGGCACGATTTAATTAGGGATTTAATTTCTGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGTCGCCGTCTGAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCACTGTCCGCGTCACAAAAGCAAGATCATGGACGAACAGGCCCATGAACAGAAAGCCCAAGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTTCAATCGTTTGATGCTAAGAACGATATTGGTCACATGGGCAAGGTCTTATGTTTGTCCGACGTTACCCGTGGTATTGGGCTTACCCATCGAGTTGGCAAGCGTTTCTGTGTCAAATCACTTTATTTTGTTGGCAAGATCTGGATGGATGAAAATATTAAGGTTAAGAACCACACTAACACCGTTTTATTCTGGATAGTTAGAGATCGGCGTCCTACTGGAACGCCTAATGATTTTCAGCAGGTCTTTAATGTATATGATAATGAACCCAGCACTGCTACTGTGAAGAACGACCAGCGTGATCGTTACCAGGTTTTAAGGAGGTTCCAGGCAACGGTGACTGGTGGACAATATGCAGCGAAGGAGCAGGCGATTATTAGAAAGTTTTATCGTGTTAATAATTATGTAGTTTACAATCACCAGGAAGCTGGGAAGTACGAGAACCATACTGAAAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACTTTGAAAGTCAGAAGTTATTTCTATGACTCAGTGACGAATTAATAAAGATTGAATTTTATTATATTAGACTGTCTTACATATTCTGTCTTTTCCAATACATCCCATAATACATGATCACATGCTCTAATTACATTGTTAATACTAATTACACCCAAATTATCTAAATATTTCATACATTGAACCCTAAATACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGTCCAGATCTGGAAGATTAGAAAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGGTTGAACTGTATTTGGATCTGTATGATGTCCTGATTGGTGTTGAATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATAGAGGGGATTTCTGATCGTCCAAGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGTGAATCCATGATTTGCGCAGTCTATGCCTAAGTAATATGAGCACCCGCACGTTAGATCAACTCTCCTCCTGCGAACTGGTTTCTTCTTGGCTATTCTGTGTTGCACTTTGATTGGAACCTGAGTACAATGGGCTGTTGAGGGTGATGAATTCCGCATTCTTTAATGCCCAATATTTTAATGCTGAGTTTTTCTCTTCATCCAAGAATTCTTTATAGCTAGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGGTCGACGTCATCGATGACGTTATACCAGGCATCATTATTGTATACCTTTGGACTGAGATCAAGGTGACCACAGAGATAATTATGTGGGCCTAATGATCTTGCCCACATCGTCTTTCCTGTTCTACTATCACCTTCAATTACTATACTCATGGGTCTCAATGGCCGCGCAGCGGCACTGACGACATTCTCGGCAGCCCATTCCTCAAGTTCCTCTGGAACTTGATCGAAAGAAGAAGATAAAAAAGGAGAAATATATTCCTCTATTGGAGGAGTAAAAATCCTATCTAAATTAGAATTTAAATTATGAAACTGTAAAACAAAATCTTTAGGAGCCTTCTCCTTTAATATATTGAGGGCCGCTGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCCGTCTTTTTCCATGTATGCTTTAACATCTGTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGATGTGAGATCGAAGAATCTGTTGTTTTGGCATTTGAATTTGCCTTCGAACTGGATGAGGACATGCAGGTGAGGAGACCCATCTTCGTGTAGTTCCCTGCAAATACGTATGAATAATTTATTAGTCGGTGTTGATAGGGCTGAGATTTGGGAAAGTGCCTCTTCTTTAGTAAGGGAGCACTGTGGATAAGTGAGGAAATAATTCTTGGCATTTATAAAAAATTTTTTTGGTTGAGGCATATTGACTGGTCAATCGGGTCCTCTCAAACTTGGCTATGCAATCGGGGAATGGGTCCTTATTTATAGTTGAGGACCTAAATGGCAAAGTCGTAAATTCCAAAAGAAATTCAAAATTTGAATTTTGAATCCAAAAGCGGCCATCCGAT
Gene Information
|
NCBI Accession
|
YP_001285869.1
|
|
Location
|
139-495 |
|
Protein Name
|
V2 |
|
Coding Region
|
ATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGATTTAGGTGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACCTATTCGCCTGACACATTAGGGCACGATTTAATTAGGGATTTAATTTCTGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGTCGCCGTCTGAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCACTGTCCGCGTCACAAAAGCAAGATCATGGACGAACAGGCCCATGAACAGAAAGCCCAAGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAG |
|
Protein Sequence
|
MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGHDLIRDLISVIRARNYVEATSRYNHFHARLEGTSPSELRQPICEPCCCPHCPRHKSKIMDEQAHEQKAQDVQDVQKSRCP |
|
NCBI Accession
|
YP_001285870.1
|
|
Location
|
299-1069 |
|
Protein Name
|
V1 |
|
Coding Region
|
ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGTCGCCGTCTGAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCACTGTCCGCGTCACAAAAGCAAGATCATGGACGAACAGGCCCATGAACAGAAAGCCCAAGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTTCAATCGTTTGATGCTAAGAACGATATTGGTCACATGGGCAAGGTCTTATGTTTGTCCGACGTTACCCGTGGTATTGGGCTTACCCATCGAGTTGGCAAGCGTTTCTGTGTCAAATCACTTTATTTTGTTGGCAAGATCTGGATGGATGAAAATATTAAGGTTAAGAACCACACTAACACCGTTTTATTCTGGATAGTTAGAGATCGGCGTCCTACTGGAACGCCTAATGATTTTCAGCAGGTCTTTAATGTATATGATAATGAACCCAGCACTGCTACTGTGAAGAACGACCAGCGTGATCGTTACCAGGTTTTAAGGAGGTTCCAGGCAACGGTGACTGGTGGACAATATGCAGCGAAGGAGCAGGCGATTATTAGAAAGTTTTATCGTGTTAATAATTATGTAGTTTACAATCACCAGGAAGCTGGGAAGTACGAGAACCATACTGAAAATGCTTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACTTTGAAAGTCAGAAGTTATTTCTATGACTCAGTGACGAATTAA |
|
Protein Sequence
|
MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPTVRVTKARSWTNRPMNRKPKMYRMYRSPDVPRGCEGPCKVQSFDAKNDIGHMGKVLCLSDVTRGIGLTHRVGKRFCVKSLYFVGKIWMDENIKVKNHTNTVLFWIVRDRRPTGTPNDFQQVFNVYDNEPSTATVKNDQRDRYQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKVRSYFYDSVTN |
|
NCBI Accession
|
YP_001285871.1
|
|
Location
|
833-1003 |
|
Protein Name
|
C5 |
|
Coding Region
|
ATGAGTACATGCCATATACAACAACAAAGCATTTTCAGTATGGTTCTCGTACTTCCCAGCTTCCTGGTGATTGTAAACTACATAATTATTAACACGATAAAACTTTCTAATAATCGCCTGCTCCTTCGCTGCATATTGTCCACCAGTCACCGTTGCCTGGAACCTCCTTAA |
|
Protein Sequence
|
MSTCHIQQQSIFSMVLVLPSFLVIVNYIIINTIKLSNNRLLLRCILSTSHRCLEPP |
|
NCBI Accession
|
YP_001285872.1
|
|
Location
|
1066-1470 |
|
Protein Name
|
C3 |
|
Coding Region
|
ATGGATTCACGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAGTGGCGTGTATACTTGGACGATCAGAAATCCCCTCTATTTCAAGATAACCAAGCACCACGAGAGACCATTCAACACCAATCAGGACATCATACAGATCCAAATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTAATCTTCCAGATCTGGACTCGCTTACAACCTCAGACTTGGCGTTTCTTAAGAGTATTTAGGGTTCAATGTATGAAATATTTAGATAATTTGGGTGTAATTAGTATTAACAATGTAATTAGAGCATGTGATCATGTATTATGGGATGTATTGGAAAAGACAGAATATGTAAGACAGTCTAATATAATAAAATTCAATCTTTATTAA |
|
Protein Sequence
|
MDSRTGELLTATQCESGVYTWTIRNPLYFKITKHHERPFNTNQDIIQIQIQFNHNLRKALGIHQCFLIFQIWTRLQPQTWRFLRVFRVQCMKYLDNLGVISINNVIRACDHVLWDVLEKTEYVRQSNIIKFNLY |
|
NCBI Accession
|
YP_001285873.1
|
|
Location
|
1211-1618 |
|
Protein Name
|
C2 |
|
Coding Region
|
ATGCGGAATTCATCACCCTCAACAGCCCATTGTACTCAGGTTCCAATCAAAGTGCAACACAGAATAGCCAAGAAGAAACCAGTTCGCAGGAGGAGAGTTGATCTAACGTGCGGGTGCTCATATTACTTAGGCATAGACTGCGCAAATCATGGATTCACGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAGTGGCGTGTATACTTGGACGATCAGAAATCCCCTCTATTTCAAGATAACCAAGCACCACGAGAGACCATTCAACACCAATCAGGACATCATACAGATCCAAATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTAATCTTCCAGATCTGGACTCGCTTACAACCTCAGACTTGGCGTTTCTTAAGAGTATTTAG |
|
Protein Sequence
|
MRNSSPSTAHCTQVPIKVQHRIAKKKPVRRRRVDLTCGCSYYLGIDCANHGFTHRGITHCNSMREWRVYLDDQKSPLFQDNQAPRETIQHQSGHHTDPNTVQPQPEESVGNTPVFSNLPDLDSLTTSDLAFLKSI |
|
NCBI Accession
|
YP_001285874.1
|
|
Location
|
1518-2606 |
|
Protein Name
|
C1 |
|
Coding Region
|
ATGCCTCAACCAAAAAAATTTTTTATAAATGCCAAGAATTATTTCCTCACTTATCCACAGTGCTCCCTTACTAAAGAAGAGGCACTTTCCCAAATCTCAGCCCTATCAACACCGACTAATAAATTATTCATACGTATTTGCAGGGAACTACACGAAGATGGGTCTCCTCACCTGCATGTCCTCATCCAGTTCGAAGGCAAATTCAAATGCCAAAACAACAGATTCTTCGATCTCACATCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTTAAAGCATACATGGAAAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCAGCGGCCCTCAATATATTAAAGGAGAAGGCTCCTAAAGATTTTGTTTTACAGTTTCATAATTTAAATTCTAATTTAGATAGGATTTTTACTCCTCCAATAGAGGAATATATTTCTCCTTTTTTATCTTCTTCTTTCGATCAAGTTCCAGAGGAACTTGAGGAATGGGCTGCCGAGAATGTCGTCAGTGCCGCTGCGCGGCCATTGAGACCCATGAGTATAGTAATTGAAGGTGATAGTAGAACAGGAAAGACGATGTGGGCAAGATCATTAGGCCCACATAATTATCTCTGTGGTCACCTTGATCTCAGTCCAAAGGTATACAATAATGATGCCTGGTATAACGTCATCGATGACGTCGACCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACTAAATACGGAAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCCAACTCTAGCTATAAAGAATTCTTGGATGAAGAGAAAAACTCAGCATTAAAATATTGGGCATTAAAGAATGCGGAATTCATCACCCTCAACAGCCCATTGTACTCAGGTTCCAATCAAAGTGCAACACAGAATAGCCAAGAAGAAACCAGTTCGCAGGAGGAGAGTTGA |
|
Protein Sequence
|
MPQPKKFFINAKNYFLTYPQCSLTKEEALSQISALSTPTNKLFIRICRELHEDGSPHLHVLIQFEGKFKCQNNRFFDLTSPSRSAHFHPNIQGAKSSTDVKAYMEKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILKEKAPKDFVLQFHNLNSNLDRIFTPPIEEYISPFLSSSFDQVPEELEEWAAENVVSAAARPLRPMSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKYWALKNAEFITLNSPLYSGSNQSATQNSQEETSSQEES |
|
NCBI Accession
|
YP_001285875.1
|
|
Location
|
2156-2449 |
|
Protein Name
|
C4 |
|
Coding Region
|
ATGGGTCTCCTCACCTGCATGTCCTCATCCAGTTCGAAGGCAAATTCAAATGCCAAAACAACAGATTCTTCGATCTCACATCCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTTAAAGCATACATGGAAAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCAGCGGCCCTCAATATATTAA |
|
Protein Sequence
|
MGLLTCMSSSSSKANSNAKTTDSSISHPQAGQHISIRTFRELKAQQMLKHTWKKTETCLIMEFSRSMEDQLEEVANLPTTHMPRQSIQGPKQRPSIY |