Tobacco leaf curl Pusa virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000890215.1 |
| Isolate |
India: Pusa Bihar |
| Release date |
2015/2/22 |
| Submitter |
Singh,M.K., Singh,K., Haq,Q.M., Mandal,B., Varma,A., Singh,M. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGAAATTTTTTAAAGTGGGCCCTTGTGTCGGCCACTAGAAACGCTCCCTCAGAGGTAAATTAGTGGTGGTTATAGCTCACTTCATTTCAAACATGTGGGATCCATTAGTAAACGAGTTCCCAGATACGGTTCATGGTCTACGGTGTATGCTAGCCAAGAAATACGTACAAGAAGTTCAGAAGACGTATTCTCCTGATACTATTGGGAACGATTTATTCTGTGATCTTATACATCTCTTAAATACTAAAAATTATGAGCAAGCGTCCAGCAGATATAGTCATTTCTACTCCCGCCTCCAAGGTACGTCGCCGGCTGAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGACATGGGTCAATCGGCCCATGTACAAAAAGCCCAAGATTTACAGAATGTACAGAAGCCCTGATGTGCCCAAAGGATGTGAAGGCCCATGTAAGGTCCAGTCCTATGAACAGAGACATGATATAGCCCATACAGGCAAGGTCATATGTGTTTCTGATGTTACTCGTGGTAATGGGCTTACTCATCGTGTTGGTAAGCGATTCTGTGTGAAGTCCATTTATGTTTTGGGGAAGATCTGGATGGACGAGAACATCAAGACCAAAAACCATACGAACACTGTCATGTTCTATTTGGTTCGTGATAGAAGGCCCTTTGGTACTGCTATGGACTTTGGACAGGTTTTCAACATGTATGATAATGAGCCCAGTACTGCTACGGTGAAGAACGACCTGAGAGATCGATTCCAAGTGTTAAGGAAATTTACGGCAACGGTTACAGGTGGTCAGTATGCATCCAAGGAACAGGCGTTAGTTAGGAAGTTCATGAAGATTAACAATTATGTAGTCTATAATCATCAAGAAGCTGCCAAGTATGACAATCATACTGAGAATGCTCTTCTATTGTATATGGCTTGTACTCATGCCAGTAACCCAGTGTATGCAACATTGAAGATCAGAATCTACTTCTATGATTCTGTTCAGAATTATAAATATTGAATTTTATTATATGTGATATGAGCATCATGTGCCCTCCATACATCATACAGTACATGGGATATAGCCCTAATTACATTGTTAATACTAATAACGCCTAAACTATCTAAGTACTTCATACATTGATATTTAAATACTCTTAAGAAACGCAAGGTCTGAGGACGTAAACGAGTCCAGATTCGGCAAATTAGAAAACACTGGTGTATCCCCAACGCTTTCCTCAGGTTGTAGTTGAACTGGACTTGTAAGGTTATTATGTCGTTGTTGGATAGAAATGGTCTCTCGTGGTGCTGGGATATCTTGAAATAGAGGGGATTTTTGACCGTCCAGGTATACACGCCACTCTCTGCCTGAGTTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGTGATGCGCAGTCAAGTCCAAAATAGTAAGAGCAACCGCAAGGAAGATCTATTCTACGCCTGCGAACTGGTCTCTTCTTGGCTATTCTGTGCTGGACTTTGATGGGTACCTGAGTACAGTGGCTCCGTGAGGGTGATGAATTCTGCATTCTTGAGTGCCCAGTCTTTGAGTGCTGAATTCTTTTCCTCGTCCTCTCTTATAGATGATTTCGGGCCTGGATTCAGAGAGATAGTGGGATTCCACTTTATTTGCAGGGCTTCCCGTACTTTGTGTTCTTTGCCAGTCCCTTTGGGCCCCCATGAATCTTTAAAGTGCTTTAGATAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCATCATTACTGTACACCTTTGGACTCAGGTCAAGGTGACCACATAAATAGTTATGTGGACCCAGAGACCTGGCCCACATGGTCTTCCCTGTTCTACTCTCACCCTCTATGACTATACTGACGGGTCTCCAAGGCCGCGCAGCGGCATCCCTTACATTTTCTGAAACCCAGCATTCAAGTTCTTCTGGAACTTGATCGAATGAAGAAGATAAAAAAGGAGAAACAAAAACCTCTAAAGGAGGTGCAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAATACATAATCCTTAGGTGCTAATTCCTTAATTACGCTAAGAGCCTCCGACTTACTTCCTGTGTTAATCGCCTTGGCGTAAGCATCATTGGCTGATTGTTGTCCCCCTCTTGCAGATCTTCCATCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTATCCATATAGGACTTGACATCGGAACTCGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGACCAGGTCGAAGAATCTGTTATTCTGGCATTTGTATTTCCCTTCGAACTGGATAAGCACGTGGAGATGAGGAGACCCATTCTTCGTGAAGCTCTCTGCAGATCTTGATGAATTTTTTATTTGTAGGTGTGGATAGGTTTCGTAATTGGGAAAGTGCTTCCTCTTTGGTGAGTGAGCACTGTGGATAAGTGAGGAAATAATTTCTGGCATTTATTAAGAAACGCTTTGGAGGTGCCATTTGACTTGGTCAATCGGGTCTCAGCAAACTGGCTCATGCAATCGGGGAATGGGTCTCAATATATACTTGGGACCTAAATGTCATTATTGTAATTCTGAAAAGAAATTCAAAATTCAAATTTGAAATCCAAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_003934910.1
|
|
Location
|
105-455 |
|
Gene Name
|
AV2 |
|
Protein Name
|
pre-coat protein |
|
Coding Region
|
ATGTGGGATCCATTAGTAAACGAGTTCCCAGATACGGTTCATGGTCTACGGTGTATGCTAGCCAAGAAATACGTACAAGAAGTTCAGAAGACGTATTCTCCTGATACTATTGGGAACGATTTATTCTGTGATCTTATACATCTCTTAAATACTAAAAATTATGAGCAAGCGTCCAGCAGATATAGTCATTTCTACTCCCGCCTCCAAGGTACGTCGCCGGCTGAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGACATGGGTCAATCGGCCCATGTACAAAAAGCCCAAGATTTACAGAATGTACAGAAGCCCTGA |
|
Protein Sequence
|
MWDPLVNEFPDTVHGLRCMLAKKYVQEVQKTYSPDTIGNDLFCDLIHLLNTKNYEQASSRYSHFYSRLQGTSPAELRQPICQPCCCPHCPRHKQKEDMGQSAHVQKAQDLQNVQKP |
|
NCBI Accession
|
YP_003934911.1
|
|
Location
|
265-1047 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGAGCAAGCGTCCAGCAGATATAGTCATTTCTACTCCCGCCTCCAAGGTACGTCGCCGGCTGAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGACATGGGTCAATCGGCCCATGTACAAAAAGCCCAAGATTTACAGAATGTACAGAAGCCCTGATGTGCCCAAAGGATGTGAAGGCCCATGTAAGGTCCAGTCCTATGAACAGAGACATGATATAGCCCATACAGGCAAGGTCATATGTGTTTCTGATGTTACTCGTGGTAATGGGCTTACTCATCGTGTTGGTAAGCGATTCTGTGTGAAGTCCATTTATGTTTTGGGGAAGATCTGGATGGACGAGAACATCAAGACCAAAAACCATACGAACACTGTCATGTTCTATTTGGTTCGTGATAGAAGGCCCTTTGGTACTGCTATGGACTTTGGACAGGTTTTCAACATGTATGATAATGAGCCCAGTACTGCTACGGTGAAGAACGACCTGAGAGATCGATTCCAAGTGTTAAGGAAATTTACGGCAACGGTTACAGGTGGTCAGTATGCATCCAAGGAACAGGCGTTAGTTAGGAAGTTCATGAAGATTAACAATTATGTAGTCTATAATCATCAAGAAGCTGCCAAGTATGACAATCATACTGAGAATGCTCTTCTATTGTATATGGCTTGTACTCATGCCAGTAACCCAGTGTATGCAACATTGAAGATCAGAATCTACTTCTATGATTCTGTTCAGAATTATAAATATTGA |
|
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDSPYVSRAAAPTVLVTNKRRTWVNRPMYKKPKIYRMYRSPDVPKGCEGPCKVQSYEQRHDIAHTGKVICVSDVTRGNGLTHRVGKRFCVKSIYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPFGTAMDFGQVFNMYDNEPSTATVKNDLRDRFQVLRKFTATVTGGQYASKEQALVRKFMKINNYVVYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQNYKY |
|
NCBI Accession
|
YP_003934912.1
|
|
Location
|
1035-1433 |
|
Gene Name
|
AC3 |
|
Protein Name
|
AC3 |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAGGCAGAGAGTGGCGTGTATACCTGGACGGTCAAAAATCCCCTCTATTTCAAGATATCCCAGCACCACGAGAGACCATTTCTATCCAACAACGACATAATAACCTTACAAGTCCAGTTCAACTACAACCTGAGGAAAGCGTTGGGGATACACCAGTGTTTTCTAATTTGCCGAATCTGGACTCGTTTACGTCCTCAGACCTTGCGTTTCTTAAGAGTATTTAAATATCAATGTATGAAGTACTTAGATAGTTTAGGCGTTATTAGTATTAACAATGTAATTAGGGCTATATCCCATGTACTGTATGATGTATGGAGGGCACATGATGCTCATATCACATATAATAAAATTCAATATTTATAA |
|
Protein Sequence
|
MDSRTGELITATQAESGVYTWTVKNPLYFKISQHHERPFLSNNDIITLQVQFNYNLRKALGIHQCFLICRIWTRLRPQTLRFLRVFKYQCMKYLDSLGVISINNVIRAISHVLYDVWRAHDAHITYNKIQYL |
|
NCBI Accession
|
YP_003934913.1
|
|
Location
|
1174-1581 |
|
Gene Name
|
AC2 |
|
Protein Name
|
AC2 |
|
Coding Region
|
ATGCAGAATTCATCACCCTCACGGAGCCACTGTACTCAGGTACCCATCAAAGTCCAGCACAGAATAGCCAAGAAGAGACCAGTTCGCAGGCGTAGAATAGATCTTCCTTGCGGTTGCTCTTACTATTTTGGACTTGACTGCGCATCACATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAGGCAGAGAGTGGCGTGTATACCTGGACGGTCAAAAATCCCCTCTATTTCAAGATATCCCAGCACCACGAGAGACCATTTCTATCCAACAACGACATAATAACCTTACAAGTCCAGTTCAACTACAACCTGAGGAAAGCGTTGGGGATACACCAGTGTTTTCTAATTTGCCGAATCTGGACTCGTTTACGTCCTCAGACCTTGCGTTTCTTAAGAGTATTTAA |
|
Protein Sequence
|
MQNSSPSRSHCTQVPIKVQHRIAKKRPVRRRRIDLPCGCSYYFGLDCASHGFTHRGTHHCNSGREWRVYLDGQKSPLFQDIPAPRETISIQQRHNNLTSPVQLQPEESVGDTPVFSNLPNLDSFTSSDLAFLKSI |
|
NCBI Accession
|
YP_003934914.1
|
|
Location
|
1487-2527 |
|
Gene Name
|
AC1 |
|
Protein Name
|
Rep |
|
Coding Region
|
ATGCCAGAAATTATTTCCTCACTTATCCACAGTGCTCACTCACCAAAGAGGAAGCACTTTCCCAATTACGAAACCTATCCACACCTACAAATAAAAAATTCATCAAGATCTGCAGAGAGCTTCACGAAGAATGGGTCTCCTCATCTCCACGTGCTTATCCAGTTCGAAGGGAAATACAAATGCCAGAATAACAGATTCTTCGACCTGGTCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGTTCCGATGTCAAGTCCTATATGGATAAGGACGGAGACACCCTCGAATGGGGAGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGACAACAATCAGCCAATGATGCTTACGCCAAGGCGATTAACACAGGAAGTAAGTCGGAGGCTCTTAGCGTAATTAAGGAATTAGCACCTAAGGATTATGTATTACAATTTCATAATTTAAATGCTAATTTAGATAGGATTTTTGCACCTCCTTTAGAGGTTTTTGTTTCTCCTTTTTTATCTTCTTCATTCGATCAAGTTCCAGAAGAACTTGAATGCTGGGTTTCAGAAAATGTAAGGGATGCCGCTGCGCGGCCTTGGAGACCCGTCAGTATAGTCATAGAGGGTGAGAGTAGAACAGGGAAGACCATGTGGGCCAGGTCTCTGGGTCCACATAACTATTTATGTGGTCACCTTGACCTGAGTCCAAAGGTGTACAGTAATGATGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTATCTAAAGCACTTTAAAGATTCATGGGGGCCCAAAGGGACTGGCAAAGAACACAAAGTACGGGAAGCCCTGCAAATAAAGTGGAATCCCACTATCTCTCTGAATCCAGGCCCGAAATCATCTATAAGAGAGGACGAGGAAAAGAATTCAGCACTCAAAGACTGGGCACTCAAGAATGCAGAATTCATCACCCTCACGGAGCCACTGTACTCAGGTACCCATCAAAGTCCAGCACAGAATAGCCAAGAAGAGACCAGTTCGCAGGCGTAG |
|
Protein Sequence
|
MPEIISSLIHSAHSPKRKHFPNYETYPHLQIKNSSRSAESFTKNGSPHLHVLIQFEGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYMDKDGDTLEWGEFQIDGRSARGGQQSANDAYAKAINTGSKSEALSVIKELAPKDYVLQFHNLNANLDRIFAPPLEVFVSPFLSSSFDQVPEELECWVSENVRDAAARPWRPVSIVIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKDSWGPKGTGKEHKVREALQIKWNPTISLNPGPKSSIREDEEKNSALKDWALKNAEFITLTEPLYSGTHQSPAQNSQEETSSQA |
|
NCBI Accession
|
YP_003934915.1
|
|
Location
|
2107-2397 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 |
|
Coding Region
|
ATGGGTCTCCTCATCTCCACGTGCTTATCCAGTTCGAAGGGAAATACAAATGCCAGAATAACAGATTCTTCGACCTGGTCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGTTCCGATGTCAAGTCCTATATGGATAAGGACGGAGACACCCTCGAATGGGGAGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGACAACAATCAGCCAATGATGCTTACGCCAAGGCGATTAACACAGGAAGTAAGTCGGAGGCTCTTAGCGTAA |
|
Protein Sequence
|
MGLLISTCLSSSKGNTNARITDSSTWSPQPGQHISIRTFRELNRVPMSSPIWIRTETPSNGESFRSMEDLQEGDNNQPMMLTPRRLTQEVSRRLLA |