Tobacco leaf curl Pusa virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000890215.1
Isolate India: Pusa Bihar
Release date 2015/2/22
Submitter Singh,M.K., Singh,K., Haq,Q.M., Mandal,B., Varma,A., Singh,M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_014596
ACCGGATGGCCGCGAAATTTTTTAAAGTGGGCCCTTGTGTCGGCCACTAGAAACGCTCCCTCAGAGGTAAATTAGTGGTGGTTATAGCTCACTTCATTTCAAACATGTGGGATCCATTAGTAAACGAGTTCCCAGATACGGTTCATGGTCTACGGTGTATGCTAGCCAAGAAATACGTACAAGAAGTTCAGAAGACGTATTCTCCTGATACTATTGGGAACGATTTATTCTGTGATCTTATACATCTCTTAAATACTAAAAATTATGAGCAAGCGTCCAGCAGATATAGTCATTTCTACTCCCGCCTCCAAGGTACGTCGCCGGCTGAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGACATGGGTCAATCGGCCCATGTACAAAAAGCCCAAGATTTACAGAATGTACAGAAGCCCTGATGTGCCCAAAGGATGTGAAGGCCCATGTAAGGTCCAGTCCTATGAACAGAGACATGATATAGCCCATACAGGCAAGGTCATATGTGTTTCTGATGTTACTCGTGGTAATGGGCTTACTCATCGTGTTGGTAAGCGATTCTGTGTGAAGTCCATTTATGTTTTGGGGAAGATCTGGATGGACGAGAACATCAAGACCAAAAACCATACGAACACTGTCATGTTCTATTTGGTTCGTGATAGAAGGCCCTTTGGTACTGCTATGGACTTTGGACAGGTTTTCAACATGTATGATAATGAGCCCAGTACTGCTACGGTGAAGAACGACCTGAGAGATCGATTCCAAGTGTTAAGGAAATTTACGGCAACGGTTACAGGTGGTCAGTATGCATCCAAGGAACAGGCGTTAGTTAGGAAGTTCATGAAGATTAACAATTATGTAGTCTATAATCATCAAGAAGCTGCCAAGTATGACAATCATACTGAGAATGCTCTTCTATTGTATATGGCTTGTACTCATGCCAGTAACCCAGTGTATGCAACATTGAAGATCAGAATCTACTTCTATGATTCTGTTCAGAATTATAAATATTGAATTTTATTATATGTGATATGAGCATCATGTGCCCTCCATACATCATACAGTACATGGGATATAGCCCTAATTACATTGTTAATACTAATAACGCCTAAACTATCTAAGTACTTCATACATTGATATTTAAATACTCTTAAGAAACGCAAGGTCTGAGGACGTAAACGAGTCCAGATTCGGCAAATTAGAAAACACTGGTGTATCCCCAACGCTTTCCTCAGGTTGTAGTTGAACTGGACTTGTAAGGTTATTATGTCGTTGTTGGATAGAAATGGTCTCTCGTGGTGCTGGGATATCTTGAAATAGAGGGGATTTTTGACCGTCCAGGTATACACGCCACTCTCTGCCTGAGTTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGTGATGCGCAGTCAAGTCCAAAATAGTAAGAGCAACCGCAAGGAAGATCTATTCTACGCCTGCGAACTGGTCTCTTCTTGGCTATTCTGTGCTGGACTTTGATGGGTACCTGAGTACAGTGGCTCCGTGAGGGTGATGAATTCTGCATTCTTGAGTGCCCAGTCTTTGAGTGCTGAATTCTTTTCCTCGTCCTCTCTTATAGATGATTTCGGGCCTGGATTCAGAGAGATAGTGGGATTCCACTTTATTTGCAGGGCTTCCCGTACTTTGTGTTCTTTGCCAGTCCCTTTGGGCCCCCATGAATCTTTAAAGTGCTTTAGATAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCATCATTACTGTACACCTTTGGACTCAGGTCAAGGTGACCACATAAATAGTTATGTGGACCCAGAGACCTGGCCCACATGGTCTTCCCTGTTCTACTCTCACCCTCTATGACTATACTGACGGGTCTCCAAGGCCGCGCAGCGGCATCCCTTACATTTTCTGAAACCCAGCATTCAAGTTCTTCTGGAACTTGATCGAATGAAGAAGATAAAAAAGGAGAAACAAAAACCTCTAAAGGAGGTGCAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAATACATAATCCTTAGGTGCTAATTCCTTAATTACGCTAAGAGCCTCCGACTTACTTCCTGTGTTAATCGCCTTGGCGTAAGCATCATTGGCTGATTGTTGTCCCCCTCTTGCAGATCTTCCATCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTATCCATATAGGACTTGACATCGGAACTCGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGACCAGGTCGAAGAATCTGTTATTCTGGCATTTGTATTTCCCTTCGAACTGGATAAGCACGTGGAGATGAGGAGACCCATTCTTCGTGAAGCTCTCTGCAGATCTTGATGAATTTTTTATTTGTAGGTGTGGATAGGTTTCGTAATTGGGAAAGTGCTTCCTCTTTGGTGAGTGAGCACTGTGGATAAGTGAGGAAATAATTTCTGGCATTTATTAAGAAACGCTTTGGAGGTGCCATTTGACTTGGTCAATCGGGTCTCAGCAAACTGGCTCATGCAATCGGGGAATGGGTCTCAATATATACTTGGGACCTAAATGTCATTATTGTAATTCTGAAAAGAAATTCAAAATTCAAATTTGAAATCCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_003934910.1
Location 105-455
Gene Name AV2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCATTAGTAAACGAGTTCCCAGATACGGTTCATGGTCTACGGTGTATGCTAGCCAAGAAATACGTACAAGAAGTTCAGAAGACGTATTCTCCTGATACTATTGGGAACGATTTATTCTGTGATCTTATACATCTCTTAAATACTAAAAATTATGAGCAAGCGTCCAGCAGATATAGTCATTTCTACTCCCGCCTCCAAGGTACGTCGCCGGCTGAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGACATGGGTCAATCGGCCCATGTACAAAAAGCCCAAGATTTACAGAATGTACAGAAGCCCTGA
Protein Sequence MWDPLVNEFPDTVHGLRCMLAKKYVQEVQKTYSPDTIGNDLFCDLIHLLNTKNYEQASSRYSHFYSRLQGTSPAELRQPICQPCCCPHCPRHKQKEDMGQSAHVQKAQDLQNVQKP

NCBI Accession YP_003934911.1
Location 265-1047
Gene Name AV1
Protein Name coat protein
Coding Region ATGAGCAAGCGTCCAGCAGATATAGTCATTTCTACTCCCGCCTCCAAGGTACGTCGCCGGCTGAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGACATGGGTCAATCGGCCCATGTACAAAAAGCCCAAGATTTACAGAATGTACAGAAGCCCTGATGTGCCCAAAGGATGTGAAGGCCCATGTAAGGTCCAGTCCTATGAACAGAGACATGATATAGCCCATACAGGCAAGGTCATATGTGTTTCTGATGTTACTCGTGGTAATGGGCTTACTCATCGTGTTGGTAAGCGATTCTGTGTGAAGTCCATTTATGTTTTGGGGAAGATCTGGATGGACGAGAACATCAAGACCAAAAACCATACGAACACTGTCATGTTCTATTTGGTTCGTGATAGAAGGCCCTTTGGTACTGCTATGGACTTTGGACAGGTTTTCAACATGTATGATAATGAGCCCAGTACTGCTACGGTGAAGAACGACCTGAGAGATCGATTCCAAGTGTTAAGGAAATTTACGGCAACGGTTACAGGTGGTCAGTATGCATCCAAGGAACAGGCGTTAGTTAGGAAGTTCATGAAGATTAACAATTATGTAGTCTATAATCATCAAGAAGCTGCCAAGTATGACAATCATACTGAGAATGCTCTTCTATTGTATATGGCTTGTACTCATGCCAGTAACCCAGTGTATGCAACATTGAAGATCAGAATCTACTTCTATGATTCTGTTCAGAATTATAAATATTGA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDSPYVSRAAAPTVLVTNKRRTWVNRPMYKKPKIYRMYRSPDVPKGCEGPCKVQSYEQRHDIAHTGKVICVSDVTRGNGLTHRVGKRFCVKSIYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPFGTAMDFGQVFNMYDNEPSTATVKNDLRDRFQVLRKFTATVTGGQYASKEQALVRKFMKINNYVVYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQNYKY

NCBI Accession YP_003934912.1
Location 1035-1433
Gene Name AC3
Protein Name AC3
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAGGCAGAGAGTGGCGTGTATACCTGGACGGTCAAAAATCCCCTCTATTTCAAGATATCCCAGCACCACGAGAGACCATTTCTATCCAACAACGACATAATAACCTTACAAGTCCAGTTCAACTACAACCTGAGGAAAGCGTTGGGGATACACCAGTGTTTTCTAATTTGCCGAATCTGGACTCGTTTACGTCCTCAGACCTTGCGTTTCTTAAGAGTATTTAAATATCAATGTATGAAGTACTTAGATAGTTTAGGCGTTATTAGTATTAACAATGTAATTAGGGCTATATCCCATGTACTGTATGATGTATGGAGGGCACATGATGCTCATATCACATATAATAAAATTCAATATTTATAA
Protein Sequence MDSRTGELITATQAESGVYTWTVKNPLYFKISQHHERPFLSNNDIITLQVQFNYNLRKALGIHQCFLICRIWTRLRPQTLRFLRVFKYQCMKYLDSLGVISINNVIRAISHVLYDVWRAHDAHITYNKIQYL

NCBI Accession YP_003934913.1
Location 1174-1581
Gene Name AC2
Protein Name AC2
Coding Region ATGCAGAATTCATCACCCTCACGGAGCCACTGTACTCAGGTACCCATCAAAGTCCAGCACAGAATAGCCAAGAAGAGACCAGTTCGCAGGCGTAGAATAGATCTTCCTTGCGGTTGCTCTTACTATTTTGGACTTGACTGCGCATCACATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAGGCAGAGAGTGGCGTGTATACCTGGACGGTCAAAAATCCCCTCTATTTCAAGATATCCCAGCACCACGAGAGACCATTTCTATCCAACAACGACATAATAACCTTACAAGTCCAGTTCAACTACAACCTGAGGAAAGCGTTGGGGATACACCAGTGTTTTCTAATTTGCCGAATCTGGACTCGTTTACGTCCTCAGACCTTGCGTTTCTTAAGAGTATTTAA
Protein Sequence MQNSSPSRSHCTQVPIKVQHRIAKKRPVRRRRIDLPCGCSYYFGLDCASHGFTHRGTHHCNSGREWRVYLDGQKSPLFQDIPAPRETISIQQRHNNLTSPVQLQPEESVGDTPVFSNLPNLDSFTSSDLAFLKSI

NCBI Accession YP_003934914.1
Location 1487-2527
Gene Name AC1
Protein Name Rep
Coding Region ATGCCAGAAATTATTTCCTCACTTATCCACAGTGCTCACTCACCAAAGAGGAAGCACTTTCCCAATTACGAAACCTATCCACACCTACAAATAAAAAATTCATCAAGATCTGCAGAGAGCTTCACGAAGAATGGGTCTCCTCATCTCCACGTGCTTATCCAGTTCGAAGGGAAATACAAATGCCAGAATAACAGATTCTTCGACCTGGTCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGTTCCGATGTCAAGTCCTATATGGATAAGGACGGAGACACCCTCGAATGGGGAGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGACAACAATCAGCCAATGATGCTTACGCCAAGGCGATTAACACAGGAAGTAAGTCGGAGGCTCTTAGCGTAATTAAGGAATTAGCACCTAAGGATTATGTATTACAATTTCATAATTTAAATGCTAATTTAGATAGGATTTTTGCACCTCCTTTAGAGGTTTTTGTTTCTCCTTTTTTATCTTCTTCATTCGATCAAGTTCCAGAAGAACTTGAATGCTGGGTTTCAGAAAATGTAAGGGATGCCGCTGCGCGGCCTTGGAGACCCGTCAGTATAGTCATAGAGGGTGAGAGTAGAACAGGGAAGACCATGTGGGCCAGGTCTCTGGGTCCACATAACTATTTATGTGGTCACCTTGACCTGAGTCCAAAGGTGTACAGTAATGATGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTATCTAAAGCACTTTAAAGATTCATGGGGGCCCAAAGGGACTGGCAAAGAACACAAAGTACGGGAAGCCCTGCAAATAAAGTGGAATCCCACTATCTCTCTGAATCCAGGCCCGAAATCATCTATAAGAGAGGACGAGGAAAAGAATTCAGCACTCAAAGACTGGGCACTCAAGAATGCAGAATTCATCACCCTCACGGAGCCACTGTACTCAGGTACCCATCAAAGTCCAGCACAGAATAGCCAAGAAGAGACCAGTTCGCAGGCGTAG
Protein Sequence MPEIISSLIHSAHSPKRKHFPNYETYPHLQIKNSSRSAESFTKNGSPHLHVLIQFEGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYMDKDGDTLEWGEFQIDGRSARGGQQSANDAYAKAINTGSKSEALSVIKELAPKDYVLQFHNLNANLDRIFAPPLEVFVSPFLSSSFDQVPEELECWVSENVRDAAARPWRPVSIVIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKDSWGPKGTGKEHKVREALQIKWNPTISLNPGPKSSIREDEEKNSALKDWALKNAEFITLTEPLYSGTHQSPAQNSQEETSSQA

NCBI Accession YP_003934915.1
Location 2107-2397
Gene Name AC4
Protein Name AC4
Coding Region ATGGGTCTCCTCATCTCCACGTGCTTATCCAGTTCGAAGGGAAATACAAATGCCAGAATAACAGATTCTTCGACCTGGTCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGTTCCGATGTCAAGTCCTATATGGATAAGGACGGAGACACCCTCGAATGGGGAGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGACAACAATCAGCCAATGATGCTTACGCCAAGGCGATTAACACAGGAAGTAAGTCGGAGGCTCTTAGCGTAA
Protein Sequence MGLLISTCLSSSKGNTNARITDSSTWSPQPGQHISIRTFRELNRVPMSSPIWIRTETPSNGESFRSMEDLQEGDNNQPMMLTPRRLTQEVSRRLLA

References More References in PubMed

1

Molecular characterization of Tobacco leaf curl Pusa virus, a new monopartite Begomovirus associated with tobacco leaf curl disease in India.

Singh MK, et al.  Virus Genes. 2011 Oct;43(2):296-306. doi: 10.1007/s11262-011-0631-7. Epub 2011 Jun 11.

PMID: 21667126
2

Evidence of the Association of Radish leaf curl virus with Tobacco Yellow Leaf Curl Disease in Bihar, India.

Singh MK, et al.  Indian J Virol. 2012 Jun;23(1):64-9. doi: 10.1007/s13337-012-0060-9. Epub 2012 Mar 4.

PMID: 23730006
3

Bhendi Yellow Vein Mosaic Virus and Bhendi Yellow Vein Mosaic Betasatellite Cause Enation Leaf Curl Disease and Alter Host Phytochemical Contents in Okra.

Singh AK, et al.  Plant Dis. 2021 Sep;105(9):2595-2600. doi: 10.1094/PDIS-12-20-2655-RE. Epub 2021 Oct 28.

PMID: 33393356
4

AC4 protein of tomato leaf curl Palampur virus is an RNA silencing suppressor and a pathogenicity determinant.

Kulshreshtha A, et al.  Microb Pathog. 2019 Oct;135:103636. doi: 10.1016/j.micpath.2019.103636. Epub 2019 Aug 2.

PMID: 31377236
5

RNA interference-based resistance in transgenic tomato plants against Tomato yellow leaf curl virus-Oman (TYLCV-OM) and its associated betasatellite.

Ammara Ue, et al.  Virol J. 2015 Mar 4;12:38. doi: 10.1186/s12985-015-0263-y.

PMID: 25890080
6

A novel interspecific-recombinant monopartite begomovirus emerging in tomato (Solanum lycopersicum L.) genotypes with Ty-resistant genes.

Mondal F, et al.  Mol Biol Rep. 2025 Jun 12;52(1):588. doi: 10.1007/s11033-025-10702-0.

PMID: 40504317
7

A new, previously undescribed monopartite begomovirus infecting Premna serratifolia in Vietnam.

She X, et al.  Arch Virol. 2013 Nov;158(11):2425-8. doi: 10.1007/s00705-013-1729-0. Epub 2013 Jun 8.

PMID: 23749046