Tobacco leaf curl Pusa virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000890215.1
Isolate India: Pusa Bihar
Release date 2015/2/22
Submitter Singh,M.K., Singh,K., Haq,Q.M., Mandal,B., Varma,A., Singh,M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_014596
ACCGGATGGCCGCGAAATTTTTTAAAGTGGGCCCTTGTGTCGGCCACTAGAAACGCTCCCTCAGAGGTAAATTAGTGGTGGTTATAGCTCACTTCATTTCAAACATGTGGGATCCATTAGTAAACGAGTTCCCAGATACGGTTCATGGTCTACGGTGTATGCTAGCCAAGAAATACGTACAAGAAGTTCAGAAGACGTATTCTCCTGATACTATTGGGAACGATTTATTCTGTGATCTTATACATCTCTTAAATACTAAAAATTATGAGCAAGCGTCCAGCAGATATAGTCATTTCTACTCCCGCCTCCAAGGTACGTCGCCGGCTGAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGACATGGGTCAATCGGCCCATGTACAAAAAGCCCAAGATTTACAGAATGTACAGAAGCCCTGATGTGCCCAAAGGATGTGAAGGCCCATGTAAGGTCCAGTCCTATGAACAGAGACATGATATAGCCCATACAGGCAAGGTCATATGTGTTTCTGATGTTACTCGTGGTAATGGGCTTACTCATCGTGTTGGTAAGCGATTCTGTGTGAAGTCCATTTATGTTTTGGGGAAGATCTGGATGGACGAGAACATCAAGACCAAAAACCATACGAACACTGTCATGTTCTATTTGGTTCGTGATAGAAGGCCCTTTGGTACTGCTATGGACTTTGGACAGGTTTTCAACATGTATGATAATGAGCCCAGTACTGCTACGGTGAAGAACGACCTGAGAGATCGATTCCAAGTGTTAAGGAAATTTACGGCAACGGTTACAGGTGGTCAGTATGCATCCAAGGAACAGGCGTTAGTTAGGAAGTTCATGAAGATTAACAATTATGTAGTCTATAATCATCAAGAAGCTGCCAAGTATGACAATCATACTGAGAATGCTCTTCTATTGTATATGGCTTGTACTCATGCCAGTAACCCAGTGTATGCAACATTGAAGATCAGAATCTACTTCTATGATTCTGTTCAGAATTATAAATATTGAATTTTATTATATGTGATATGAGCATCATGTGCCCTCCATACATCATACAGTACATGGGATATAGCCCTAATTACATTGTTAATACTAATAACGCCTAAACTATCTAAGTACTTCATACATTGATATTTAAATACTCTTAAGAAACGCAAGGTCTGAGGACGTAAACGAGTCCAGATTCGGCAAATTAGAAAACACTGGTGTATCCCCAACGCTTTCCTCAGGTTGTAGTTGAACTGGACTTGTAAGGTTATTATGTCGTTGTTGGATAGAAATGGTCTCTCGTGGTGCTGGGATATCTTGAAATAGAGGGGATTTTTGACCGTCCAGGTATACACGCCACTCTCTGCCTGAGTTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGTGATGCGCAGTCAAGTCCAAAATAGTAAGAGCAACCGCAAGGAAGATCTATTCTACGCCTGCGAACTGGTCTCTTCTTGGCTATTCTGTGCTGGACTTTGATGGGTACCTGAGTACAGTGGCTCCGTGAGGGTGATGAATTCTGCATTCTTGAGTGCCCAGTCTTTGAGTGCTGAATTCTTTTCCTCGTCCTCTCTTATAGATGATTTCGGGCCTGGATTCAGAGAGATAGTGGGATTCCACTTTATTTGCAGGGCTTCCCGTACTTTGTGTTCTTTGCCAGTCCCTTTGGGCCCCCATGAATCTTTAAAGTGCTTTAGATAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCATCATTACTGTACACCTTTGGACTCAGGTCAAGGTGACCACATAAATAGTTATGTGGACCCAGAGACCTGGCCCACATGGTCTTCCCTGTTCTACTCTCACCCTCTATGACTATACTGACGGGTCTCCAAGGCCGCGCAGCGGCATCCCTTACATTTTCTGAAACCCAGCATTCAAGTTCTTCTGGAACTTGATCGAATGAAGAAGATAAAAAAGGAGAAACAAAAACCTCTAAAGGAGGTGCAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAATACATAATCCTTAGGTGCTAATTCCTTAATTACGCTAAGAGCCTCCGACTTACTTCCTGTGTTAATCGCCTTGGCGTAAGCATCATTGGCTGATTGTTGTCCCCCTCTTGCAGATCTTCCATCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTATCCATATAGGACTTGACATCGGAACTCGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGACCAGGTCGAAGAATCTGTTATTCTGGCATTTGTATTTCCCTTCGAACTGGATAAGCACGTGGAGATGAGGAGACCCATTCTTCGTGAAGCTCTCTGCAGATCTTGATGAATTTTTTATTTGTAGGTGTGGATAGGTTTCGTAATTGGGAAAGTGCTTCCTCTTTGGTGAGTGAGCACTGTGGATAAGTGAGGAAATAATTTCTGGCATTTATTAAGAAACGCTTTGGAGGTGCCATTTGACTTGGTCAATCGGGTCTCAGCAAACTGGCTCATGCAATCGGGGAATGGGTCTCAATATATACTTGGGACCTAAATGTCATTATTGTAATTCTGAAAAGAAATTCAAAATTCAAATTTGAAATCCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_003934910.1
Location 105-455
Gene Name AV2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCATTAGTAAACGAGTTCCCAGATACGGTTCATGGTCTACGGTGTATGCTAGCCAAGAAATACGTACAAGAAGTTCAGAAGACGTATTCTCCTGATACTATTGGGAACGATTTATTCTGTGATCTTATACATCTCTTAAATACTAAAAATTATGAGCAAGCGTCCAGCAGATATAGTCATTTCTACTCCCGCCTCCAAGGTACGTCGCCGGCTGAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGACATGGGTCAATCGGCCCATGTACAAAAAGCCCAAGATTTACAGAATGTACAGAAGCCCTGA
Protein Sequence MWDPLVNEFPDTVHGLRCMLAKKYVQEVQKTYSPDTIGNDLFCDLIHLLNTKNYEQASSRYSHFYSRLQGTSPAELRQPICQPCCCPHCPRHKQKEDMGQSAHVQKAQDLQNVQKP

NCBI Accession YP_003934911.1
Location 265-1047
Gene Name AV1
Protein Name coat protein
Coding Region ATGAGCAAGCGTCCAGCAGATATAGTCATTTCTACTCCCGCCTCCAAGGTACGTCGCCGGCTGAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGACATGGGTCAATCGGCCCATGTACAAAAAGCCCAAGATTTACAGAATGTACAGAAGCCCTGATGTGCCCAAAGGATGTGAAGGCCCATGTAAGGTCCAGTCCTATGAACAGAGACATGATATAGCCCATACAGGCAAGGTCATATGTGTTTCTGATGTTACTCGTGGTAATGGGCTTACTCATCGTGTTGGTAAGCGATTCTGTGTGAAGTCCATTTATGTTTTGGGGAAGATCTGGATGGACGAGAACATCAAGACCAAAAACCATACGAACACTGTCATGTTCTATTTGGTTCGTGATAGAAGGCCCTTTGGTACTGCTATGGACTTTGGACAGGTTTTCAACATGTATGATAATGAGCCCAGTACTGCTACGGTGAAGAACGACCTGAGAGATCGATTCCAAGTGTTAAGGAAATTTACGGCAACGGTTACAGGTGGTCAGTATGCATCCAAGGAACAGGCGTTAGTTAGGAAGTTCATGAAGATTAACAATTATGTAGTCTATAATCATCAAGAAGCTGCCAAGTATGACAATCATACTGAGAATGCTCTTCTATTGTATATGGCTTGTACTCATGCCAGTAACCCAGTGTATGCAACATTGAAGATCAGAATCTACTTCTATGATTCTGTTCAGAATTATAAATATTGA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDSPYVSRAAAPTVLVTNKRRTWVNRPMYKKPKIYRMYRSPDVPKGCEGPCKVQSYEQRHDIAHTGKVICVSDVTRGNGLTHRVGKRFCVKSIYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPFGTAMDFGQVFNMYDNEPSTATVKNDLRDRFQVLRKFTATVTGGQYASKEQALVRKFMKINNYVVYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQNYKY

NCBI Accession YP_003934912.1
Location 1035-1433
Gene Name AC3
Protein Name AC3
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAGGCAGAGAGTGGCGTGTATACCTGGACGGTCAAAAATCCCCTCTATTTCAAGATATCCCAGCACCACGAGAGACCATTTCTATCCAACAACGACATAATAACCTTACAAGTCCAGTTCAACTACAACCTGAGGAAAGCGTTGGGGATACACCAGTGTTTTCTAATTTGCCGAATCTGGACTCGTTTACGTCCTCAGACCTTGCGTTTCTTAAGAGTATTTAAATATCAATGTATGAAGTACTTAGATAGTTTAGGCGTTATTAGTATTAACAATGTAATTAGGGCTATATCCCATGTACTGTATGATGTATGGAGGGCACATGATGCTCATATCACATATAATAAAATTCAATATTTATAA
Protein Sequence MDSRTGELITATQAESGVYTWTVKNPLYFKISQHHERPFLSNNDIITLQVQFNYNLRKALGIHQCFLICRIWTRLRPQTLRFLRVFKYQCMKYLDSLGVISINNVIRAISHVLYDVWRAHDAHITYNKIQYL

NCBI Accession YP_003934913.1
Location 1174-1581
Gene Name AC2
Protein Name AC2
Coding Region ATGCAGAATTCATCACCCTCACGGAGCCACTGTACTCAGGTACCCATCAAAGTCCAGCACAGAATAGCCAAGAAGAGACCAGTTCGCAGGCGTAGAATAGATCTTCCTTGCGGTTGCTCTTACTATTTTGGACTTGACTGCGCATCACATGGATTCACGCACAGGGGAACTCATCACTGCAACTCAGGCAGAGAGTGGCGTGTATACCTGGACGGTCAAAAATCCCCTCTATTTCAAGATATCCCAGCACCACGAGAGACCATTTCTATCCAACAACGACATAATAACCTTACAAGTCCAGTTCAACTACAACCTGAGGAAAGCGTTGGGGATACACCAGTGTTTTCTAATTTGCCGAATCTGGACTCGTTTACGTCCTCAGACCTTGCGTTTCTTAAGAGTATTTAA
Protein Sequence MQNSSPSRSHCTQVPIKVQHRIAKKRPVRRRRIDLPCGCSYYFGLDCASHGFTHRGTHHCNSGREWRVYLDGQKSPLFQDIPAPRETISIQQRHNNLTSPVQLQPEESVGDTPVFSNLPNLDSFTSSDLAFLKSI

NCBI Accession YP_003934914.1
Location 1487-2527
Gene Name AC1
Protein Name Rep
Coding Region ATGCCAGAAATTATTTCCTCACTTATCCACAGTGCTCACTCACCAAAGAGGAAGCACTTTCCCAATTACGAAACCTATCCACACCTACAAATAAAAAATTCATCAAGATCTGCAGAGAGCTTCACGAAGAATGGGTCTCCTCATCTCCACGTGCTTATCCAGTTCGAAGGGAAATACAAATGCCAGAATAACAGATTCTTCGACCTGGTCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGTTCCGATGTCAAGTCCTATATGGATAAGGACGGAGACACCCTCGAATGGGGAGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGACAACAATCAGCCAATGATGCTTACGCCAAGGCGATTAACACAGGAAGTAAGTCGGAGGCTCTTAGCGTAATTAAGGAATTAGCACCTAAGGATTATGTATTACAATTTCATAATTTAAATGCTAATTTAGATAGGATTTTTGCACCTCCTTTAGAGGTTTTTGTTTCTCCTTTTTTATCTTCTTCATTCGATCAAGTTCCAGAAGAACTTGAATGCTGGGTTTCAGAAAATGTAAGGGATGCCGCTGCGCGGCCTTGGAGACCCGTCAGTATAGTCATAGAGGGTGAGAGTAGAACAGGGAAGACCATGTGGGCCAGGTCTCTGGGTCCACATAACTATTTATGTGGTCACCTTGACCTGAGTCCAAAGGTGTACAGTAATGATGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTATCTAAAGCACTTTAAAGATTCATGGGGGCCCAAAGGGACTGGCAAAGAACACAAAGTACGGGAAGCCCTGCAAATAAAGTGGAATCCCACTATCTCTCTGAATCCAGGCCCGAAATCATCTATAAGAGAGGACGAGGAAAAGAATTCAGCACTCAAAGACTGGGCACTCAAGAATGCAGAATTCATCACCCTCACGGAGCCACTGTACTCAGGTACCCATCAAAGTCCAGCACAGAATAGCCAAGAAGAGACCAGTTCGCAGGCGTAG
Protein Sequence MPEIISSLIHSAHSPKRKHFPNYETYPHLQIKNSSRSAESFTKNGSPHLHVLIQFEGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYMDKDGDTLEWGEFQIDGRSARGGQQSANDAYAKAINTGSKSEALSVIKELAPKDYVLQFHNLNANLDRIFAPPLEVFVSPFLSSSFDQVPEELECWVSENVRDAAARPWRPVSIVIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKDSWGPKGTGKEHKVREALQIKWNPTISLNPGPKSSIREDEEKNSALKDWALKNAEFITLTEPLYSGTHQSPAQNSQEETSSQA

NCBI Accession YP_003934915.1
Location 2107-2397
Gene Name AC4
Protein Name AC4
Coding Region ATGGGTCTCCTCATCTCCACGTGCTTATCCAGTTCGAAGGGAAATACAAATGCCAGAATAACAGATTCTTCGACCTGGTCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCGAGTTCCGATGTCAAGTCCTATATGGATAAGGACGGAGACACCCTCGAATGGGGAGAGTTTCAGATCGATGGAAGATCTGCAAGAGGGGGACAACAATCAGCCAATGATGCTTACGCCAAGGCGATTAACACAGGAAGTAAGTCGGAGGCTCTTAGCGTAA
Protein Sequence MGLLISTCLSSSKGNTNARITDSSTWSPQPGQHISIRTFRELNRVPMSSPIWIRTETPSNGESFRSMEDLQEGDNNQPMMLTPRRLTQEVSRRLLA

References More References in PubMed

1

Molecular characterization of Tobacco leaf curl Pusa virus, a new monopartite Begomovirus associated with tobacco leaf curl disease in India.

Singh MK, et al.  Virus Genes. 2011 Oct;43(2):296-306. doi: 10.1007/s11262-011-0631-7. Epub 2011 Jun 11.

PMID: 21667126
2

Evidence of the Association of Radish leaf curl virus with Tobacco Yellow Leaf Curl Disease in Bihar, India.

Singh MK, et al.  Indian J Virol. 2012 Jun;23(1):64-9. doi: 10.1007/s13337-012-0060-9. Epub 2012 Mar 4.

PMID: 23730006
3

AC4 protein of tomato leaf curl Palampur virus is an RNA silencing suppressor and a pathogenicity determinant.

Kulshreshtha A, et al.  Microb Pathog. 2019 Oct;135:103636. doi: 10.1016/j.micpath.2019.103636. Epub 2019 Aug 2.

PMID: 31377236
4

A new, previously undescribed monopartite begomovirus infecting Premna serratifolia in Vietnam.

She X, et al.  Arch Virol. 2013 Nov;158(11):2425-8. doi: 10.1007/s00705-013-1729-0. Epub 2013 Jun 8.

PMID: 23749046