Genus | Begomovirus |
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NCBI Assembly | GCF_002310935.1 |
Isolate | Cuba |
Release date | 2017/9/21 |
Submitter | Chang-Sidorchuk,L., Gonzalez-Alvarez,H., Martinez-Zubiaur,Y., Navas-Castillo,J., Fiallo-Olive,E. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_009428561.1 |
---|---|
Location | 182-937 |
Gene Name | AC1 |
Protein Name | coat protein |
Coding Region | ATGCCTAAGCGCGATGCCCCATGGCGCCCGATGGCAGGAACTTCGAAGGTAAGTCGCAATGCAAATTATTCTCCCCGTGCAGGTATTGGGCCAAGAATGAACAGGGCATCGGAATGGGTTAACAGGCCTATGTACAGGAAGCCCAGGATCTATCGGACGCTACGGACGCCCGACATTCCGAGAGGCTGTGAAGGCCCGTGCAAGGTCCAGTCCTATGAACAGCGCCACGATATCTCTCACGTGGGTAAGGTGATGTGTATATCTGATGTCACACGTGGTAATGGCATTACCCACCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTACATACTAGGTAAGATATGGATGGATGAGAACATCAAGCTCAAGAACCACACGAACAGCGTTATGTTCTGGTTGGTCAGAGACCGTCGACCGTATGGGACGCCTATGGATTTTGGACAGGTGTTCAACATGTTCGACAACGAACCCAGCACTGCCACGGTTAAGAACGATCTACGTGATCGTTACCAGGTTATGCACCGGTTCTATGGTAAGGTCACAGGTGGACAGTATGCCAGCAACGAGCAGGCTATTGTCAGGCGATTCTGGAAGGTCAACAACTATGTCGTCTACAACCACCAGGAAGCTGCCAAGTACGAGAACCACACTGAGAACGCGCTGTTATTGTACATGGCATGTACACATGCCTCTAACCCCGTGTATGCAACTCTGAAGATTCGAATCTATTTTTATGATTCGATAATGAATTAA |
Protein Sequence | MPKRDAPWRPMAGTSKVSRNANYSPRAGIGPRMNRASEWVNRPMYRKPRIYRTLRTPDIPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHRFYGKVTGGQYASNEQAIVRRFWKVNNYVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIMN |
NCBI Accession | YP_009428562.1 |
---|---|
Location | 934-1332 |
Gene Name | AC3 |
Protein Name | REn |
Coding Region | ATGGATTTACGCACCGGGGAACTCATCACTGCACATCAGGCGGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTATATTTCAAGATATACAGAGTAGAGGATCTGCTATACACCAGAACAAGAGTGTACCACATCCAGATACGGTTCAACCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCTTACCTGAACTTCCAAGTCTGGACGACATCGATGACAGCTTCTGGGTCAACTTATTTAGTTAGGTTTACGTATTTAGTTAATATGTATTTAGATCAGTTAGGAGTGATTTCCATTAACAATGTAATTAGAGCTGTTCGTTTTGCAACGGACAGATCGTATGTGAATTATGTACTGGAAAATCATTCAATAAAATTCAAAATTTATTAA |
Protein Sequence | MDLRTGELITAHQAENGVYIWEIENPLYFKIYRVEDLLYTRTRVYHIQIRFNHNLRRALHLHKAYLNFQVWTTSMTASGSTYLVRFTYLVNMYLDQLGVISINNVIRAVRFATDRSYVNYVLENHSIKFKIY |
NCBI Accession | YP_009428563.1 |
---|---|
Location | 1079-1468 |
Gene Name | AC2 |
Protein Name | TrAP |
Coding Region | ATGCGGTCTTCATCACCCTCACATCCTCCCTCTATCAAGATAGCACACAGGCAGGCCAAGAGGAGGGCAGTCAGGAGGAGACGCATTGATCTTAGGTGCGGGTGCTCCATATACTTCCATATAGACTGCACGGGACATGGATTTACGCACCGGGGAACTCATCACTGCACATCAGGCGGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTATATTTCAAGATATACAGAGTAGAGGATCTGCTATACACCAGAACAAGAGTGTACCACATCCAGATACGGTTCAACCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCTTACCTGAACTTCCAAGTCTGGACGACATCGATGACAGCTTCTGGGTCAACTTATTTAGTTAG |
Protein Sequence | MRSSSPSHPPSIKIAHRQAKRRAVRRRRIDLRCGCSIYFHIDCTGHGFTHRGTHHCTSGGEWRVYLGDRKSPIFQDIQSRGSAIHQNKSVPHPDTVQPQPEESVASPQSLPELPSLDDIDDSFWVNLFS |
NCBI Accession | YP_009428564.1 |
---|---|
Location | 1817-2464 |
Gene Name | AV1 |
Protein Name | replication protein |
Coding Region | ATGCCACGGAAGGGTTCTTCAATTGCTAATGCCAAAAACTATTTCCTTACTTATCCACAGTGTTCCCTTACCAAAGAGGAGGCACTTTCCCAATTAAAAAAACTAAATACTCCGGTGAACAAGAAGTTCATCAAAATCTGCAGAGAGCTCCATCAAGATGGGAAGCCTCATCTCCACGTGCTTATACAATTCGAGGGCAAATACAACTGCACGAATAACAGATTCTTCGATCTGGTCTCCCCATCTCGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTTGAATGGGGAAAGTTCCAGATTGACGGAAGAAGTGCTAGAGGAGGCTGCCAAACAACTAATGACACATATGCCAAGGCGTTGAATGCCTCCTCTGCTGAGGAAGCTCTGCAAATAATAAAAGAGGAACAGCCTCAACATTTTTTCCTTCAGCATCATAATTTGGTAGCAAATGCTCATCGGATCTTTCAAAAGGCTCCGGAACCATGGGTCCCTCCGTTTCAACTCTCCTCTTTCACTAACGTTCCTGAAGAGATGCAAGACTGGGCCGATGAGTATTTTGGAAGAGGTTCCGCTGCGCGGCCGGAAGACCAGTAA |
Protein Sequence | MPRKGSSIANAKNYFLTYPQCSLTKEEALSQLKKLNTPVNKKFIKICRELHQDGKPHLHVLIQFEGKYNCTNNRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGKFQIDGRSARGGCQTTNDTYAKALNASSAEEALQIIKEEQPQHFFLQHHNLVANAHRIFQKAPEPWVPPFQLSSFTNVPEEMQDWADEYFGRGSAARPEDQ |
NCBI Accession | YP_009428565.1 |
---|---|
Location | 2050-2307 |
Gene Name | AC4 |
Protein Name | AC4 protein |
Coding Region | ATGGGAAGCCTCATCTCCACGTGCTTATACAATTCGAGGGCAAATACAACTGCACGAATAACAGATTCTTCGATCTGGTCTCCCCATCTCGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCAAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACACTTGAATGGGGAAAGTTCCAGATTGACGGAAGAAGTGCTAGAGGAGGCTGCCAAACAACTAATGACACATATGCCAAGGCGTTGA |
Protein Sequence | MGSLISTCLYNSRANTTARITDSSIWSPHLGQHISIRTYRELNQAPTSSPTSTRTEIHLNGESSRLTEEVLEEAAKQLMTHMPRR |
NCBI Accession | YP_009428566.1 |
---|---|
Location | 370-1140 |
Gene Name | BV1 |
Protein Name | NSP |
Coding Region | ATGTATCCTTTGAGGAATAAACGTGGATCGTATTTTACTGCACGTCGATATTATCCACGTAATACATTTTCTAGGCGTCCATCTACTTCCAAGAAACAAGATGGGAAACGACGAGCTGTAAATACCAATAAGACGAATGACGAGCCGAAGATGTCAGCCCAACGCATACATGAGAATCAGTATGGGCCTGATTTTGTTATGGCCCATAATACTGCTATCTCGACCTTCATTAGTTACCCGGGCTTGGGTTCAACTTTACCCAACCGAAGCAGGTCCTATATTAAGTTGAAACAACTACGTTTCAAAGGGACCGTGAAGATTGAACGTGTTCAATCGGATCTGAACATGGATGGTTCTACCCCGAAGGTTGAAGGAGTCTTCTCCCTTGTTGTTGTTGTGGATCGTAAACCCCATGTTGGTCCTTCTGGCTGTCTACAATCATTTGACGAACTCTTTGGTGCAAGGATCCACAGCCATGGCAACCTCAACGTAACCTCTGCATTGAAAGATCGTTATTATATTCGACACGTTTGCAAACGTGTATTCTCAGTGGAGAAGGACACGTTGATGGTAGATGTGGAGGGATTCATTCCCCTCTCTAACAAGCGTTTCAATTGTTGGTCTACGTTCAAGGATCTTGATCGTGATTCATGCAAGGGTGTTTATGACAATATAAGCAAGAACGCCCTCTTAGTTTATTATTGTTGGATGTCGGATACGATGTCTACCGCATCTACCTTTGTATCGTTTGACCTTGATTATGTCGGTTGA |
Protein Sequence | MYPLRNKRGSYFTARRYYPRNTFSRRPSTSKKQDGKRRAVNTNKTNDEPKMSAQRIHENQYGPDFVMAHNTAISTFISYPGLGSTLPNRSRSYIKLKQLRFKGTVKIERVQSDLNMDGSTPKVEGVFSLVVVVDRKPHVGPSGCLQSFDELFGARIHSHGNLNVTSALKDRYYIRHVCKRVFSVEKDTLMVDVEGFIPLSNKRFNCWSTFKDLDRDSCKGVYDNISKNALLVYYCWMSDTMSTASTFVSFDLDYVG |
NCBI Accession | YP_009428567.1 |
---|---|
Location | 1200-2081 |
Gene Name | BC1 |
Protein Name | MP |
Coding Region | ATGGATTCTCAGTTAGTTAATCCTCCTAACGCATTCAACTACATAGAGTCTCACCGGGACGAGTACCAGCTTTCACATGACCTAACTGAGATAATCCTGCAATTTCCTTCGACGGCGTCTCAGTTGACAGCTAGGCTCAGTCGTAGCTGTATGAAGATAGACCACTGCGTCATAGAATACAGGCAACAAGTTCCGATCAACGCCACGGGGACGGTAATAGTGGAGATCCACGATAAAAGAATGACGGACAATGAGTCCTTACAGGCGTCCTGGACTTATCCGATCAGGTGCAACATAGATCTCCACTATTTCTCGGCTTCGTTCTTCTCACTCAAAGACCCAATTCCATGGAAATTGTACTATCGCGTTTGCGATACAAATGTTCATCAAAGGACCCACTTTGCCAAGTTCAAGGGCAAGCTGAAATTGTCTACGGCGAAACACTCGGTCGACATTCCATTCCGGGCACCGACAGTCAAGATCCTGTCCAAACAGTTCACCGACAAAGACGTGGACTTCTCCCATGTCGACTATGGGAAATGGGAGAGGAAGCCCATAAGATGCGCATCAATGTCAAGACTTGGGCTAAGAGGCCCAATCGAGATTAGGCCTGGCGAGTCGTGGGCTTCTAGAAGTACAATAGGTACAGGCGCGTCAGACGCGGACTCAGAGATGGAGAACGAACTCCATCCATATAGACATCTAAACAGGCTGGGAACCAGCGTTCTAGACCCAGGAGAGTCTGCTTCGATCGTGGGGGCCCAAAGAGCGGGTTCCAACATAACAATGTCGATGGGCCAGTTGAACGAGTTAGTTAGGACAACTGTCCAAGAATGTATTAATAGTAATTGTCAGGCTTCTCAAGCCAAATCATTAAAATAA |
Protein Sequence | MDSQLVNPPNAFNYIESHRDEYQLSHDLTEIILQFPSTASQLTARLSRSCMKIDHCVIEYRQQVPINATGTVIVEIHDKRMTDNESLQASWTYPIRCNIDLHYFSASFFSLKDPIPWKLYYRVCDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILSKQFTDKDVDFSHVDYGKWERKPIRCASMSRLGLRGPIEIRPGESWASRSTIGTGASDADSEMENELHPYRHLNRLGTSVLDPGESASIVGAQRAGSNITMSMGQLNELVRTTVQECINSNCQASQAKSLK |
1 |
Expression and antiviral application of exogenous lectin (griffithsin) in sweetpotatoes. Liu S, et al. Front Plant Sci. 2024 Jul 16;15:1421244. doi: 10.3389/fpls.2024.1421244. eCollection 2024. PMID: 39081525 |
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2 |
Simmonds-Gordon RN, et al. Arch Virol. 2014 Oct;159(10):2815-8. doi: 10.1007/s00705-014-2112-5. Epub 2014 May 29. PMID: 24872185 |
3 |
Maliano MR, et al. PLoS One. 2021 Apr 28;16(4):e0250066. doi: 10.1371/journal.pone.0250066. eCollection 2021. PMID: 33909644 |
4 |
Collins AM, et al. Virus Genes. 2009 Dec;39(3):387-95. doi: 10.1007/s11262-009-0401-y. Epub 2009 Sep 20. PMID: 19768650 |
5 |
Ramos PL, et al. Arch Virol. 2003 Sep;148(9):1697-712. doi: 10.1007/s00705-003-0136-3. PMID: 14505083 |