Tobacco leaf curl Comoros virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_002986905.1 |
| Isolate |
Comoros:Grande Comore, simboussa |
| Release date |
2018/8/26 |
| Submitter |
Lefeuvre,P., Martin,D.P., Hoareau,M., Naze,F., Becker,N., Delatte,H., Reynaud,B., Lett,J.M. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCTCCCGAAAAAGCAGGTGGTCCCCACGCACTAGTTTTTGTCAGCCAATCAGAACCGCGCGTGAAAGCTTAGTTATTTATTTGTTGTCTTTATATACGTGGTCCCCAAGTACCTGTCCTTGTCAGTATGTGGGATCCACTGTTGAACGAGTTCCCAGACTCTGTTCACGGATTTCGTTGTATGCTTGCCGTCAAATATTTGCAGGCAGTTGAGCAAACGTACGAGCCCAATACATTGGGCCACGATCTAATACGTGATCTTATCTGTGTTATTAGGGCTCGAGACTATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCATATACCAACCGTGCTGCTGTCCCCATTGTCCAAGGCATAAGCAAACGACGGTCATGGACTTACCGGCCCAGTTACCGAAAGCCCAGAATGTACCGGATGTACAGAAGTCCTGATGTTCCTCGTGGTTGTGAGGGTCCTTGTAAGATACAGTCATTTGATCAGCGTGATTCCGTTGTCCATACGGGTACTGTTAGATGTCTTAGTGATGTCACTAGGGGTGGTGGTCTTACCCATCGCACTGGTAAACGCTTTTGTATTAAGTCGATATATGTATTAGGTAAGATTTGGATGGACGAGAACGTGAAGAAGTCTAACCATACTAACACATGTATGTTTTGGGTAGTTAGAGATAGGCGCCCTTACGGACCTAGTCCCCAGGATTTCGGTCAGGTGTTTAATATGTTTGATAACGAGCCCAGTACTGCTACGGTTCAGAACGATAAGCGTGATCGTTATCAAGTTCTTCGTAGATTTCAGGTAACGGTAACGGGAGGTCCGTCTGGATGCAAGGAGGCTGCTATTGTTAAGAGATTTTTCCGTTTGAATCATCATGTGACGTACAATCATCAAGAGGCTGCGAAGTACGAGAATCATACGGAGAATGCTTTATTATTGTATATGGCATGTACACATGCCTCTAATCCTGTGTATGCAAGTCTGAAGATACGAATGTATTTCTATGATTCAGTGTCGAATTAATAAAATTTGAATTTTATTTCATGATTCTCCTGAACATGGAGTGTTTTTACAATAACATCGTACAATACATGATCAACTGCTCTAATTACATTGCTAATTGAAATTACACCCATGTTATCTAAATAATTTAAAACTTGAGTTTTAAATACCCTTAAGAAAAGACCAGTCTGAGGGCGTAAGCTCGTCCAGACCTTGAAGTTGAGAAAACATTTGTGAATCCCCAGTTCCTTCCTCAAATTGTGGTTGAATCTTATCTGGATCGATATGATATCGTGGGGCATGTTGAACGGCCGGTTGTCGTGGTTGATAATCTTGAAATATAGGGGATTTTGTATCTCCCAGATAAACACGCCACTCTGTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGTAAATCCATGGTCGATGCAGCTGATGTGGAGATAGTATGAGCAGCCGCAGTCGAGATCTATCCTTCTACGCCTCACTGCCTTCTTCTTGGCTGTTTTGTGCTGGACTTTGATTGGCAGTTGAGTACAGTGGCTCGTAGATGGTGATGAAGGTCGCATTCTTTGTTGCCCAGGCTTTCAAGGGTGCATTCTTATCCTCGTCTAGATATTCCTTATAAGAGGATGTTGGTCCTGGATTGCAGAGGAAGATTGTGGGAATTCCGCCTTTAATTTGAATTGGTTTCCCGTACTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTACTGTACACCTTTGGGCTTAGATCCAGATGACCACACAAATAGTTGTGGGGTCCTAATGATCTGGCCCACATAGTCTTCCCCGTCCTACTATCACCCTCAATAACTATACTTACAGGTCTCCACGGCCGCGCAGCGGCATCCATGACGTTCTCGGAAACCCACTCTTCAAGTTCCTCCGGAACTTGAGTAAAAGAAGAAGATAAAAAAGGAGAAACATAAGGAGCTGGTGGCTCCTGAAAAATCCTATCTAAATTACTATTTAAATTATGAAATTGTAAAACAAAATCTTTGGGGGCTAATTCCTTAATGACTCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGAGCTGCGGCGTAAGCGTCGTTGGCCGATTGTTGTCCCCCCCTTGCAGATCGTCCATCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCTTTGTCCAGATAGGACTTGACGTCGGAGCTGGACTTAGCTCCTTGTATGTTGGGGTGGAAACTGGTGCTACTGCTTGGGTGTACGCAATCGAAGAGGCGATTGTTGGTGCACGTGAGTTTTCCCTCGAATTGAATAAGGGCATGCAGATGAGGTTCCCCATTCTGGTGGTGTTCAAGGCAGATTTTGATATATTTAGGGTTTGTTGGAAGTGAAAGGTTTTGTAAGAAGGATAGAAGGTGTTCTTTGCTAAGAGAACACTTTGGATAAGTGAGGAAAATGTTTTTGGCTTGAATTTTAAAACGAGGAGTTCTCATGTTGACTTGGTCAATTGGAGACACTCGGCTGAACTCTCTCTAATGTATTGGAGACAATATATAGTGTCTCCAAATGGCATTTCGGAAATAAAGCTCATTGTAATTTGAATTTTGAATTTCCAAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_009508148.1
|
|
Location
|
140-490 |
|
Gene Name
|
v2 |
|
Protein Name
|
V2 protein |
|
Coding Region
|
ATGTGGGATCCACTGTTGAACGAGTTCCCAGACTCTGTTCACGGATTTCGTTGTATGCTTGCCGTCAAATATTTGCAGGCAGTTGAGCAAACGTACGAGCCCAATACATTGGGCCACGATCTAATACGTGATCTTATCTGTGTTATTAGGGCTCGAGACTATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCATATACCAACCGTGCTGCTGTCCCCATTGTCCAAGGCATAAGCAAACGACGGTCATGGACTTACCGGCCCAGTTACCGAAAGCCCAGAATGTACCGGATGTACAGAAGTCCTGA |
|
Protein Sequence
|
MWDPLLNEFPDSVHGFRCMLAVKYLQAVEQTYEPNTLGHDLIRDLICVIRARDYVEATRRYNHFHARLEGSSKAELRQPIYQPCCCPHCPRHKQTTVMDLPAQLPKAQNVPDVQKS |
|
NCBI Accession
|
YP_009508149.1
|
|
Location
|
300-1076 |
|
Gene Name
|
cp |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGACCCGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCATATACCAACCGTGCTGCTGTCCCCATTGTCCAAGGCATAAGCAAACGACGGTCATGGACTTACCGGCCCAGTTACCGAAAGCCCAGAATGTACCGGATGTACAGAAGTCCTGATGTTCCTCGTGGTTGTGAGGGTCCTTGTAAGATACAGTCATTTGATCAGCGTGATTCCGTTGTCCATACGGGTACTGTTAGATGTCTTAGTGATGTCACTAGGGGTGGTGGTCTTACCCATCGCACTGGTAAACGCTTTTGTATTAAGTCGATATATGTATTAGGTAAGATTTGGATGGACGAGAACGTGAAGAAGTCTAACCATACTAACACATGTATGTTTTGGGTAGTTAGAGATAGGCGCCCTTACGGACCTAGTCCCCAGGATTTCGGTCAGGTGTTTAATATGTTTGATAACGAGCCCAGTACTGCTACGGTTCAGAACGATAAGCGTGATCGTTATCAAGTTCTTCGTAGATTTCAGGTAACGGTAACGGGAGGTCCGTCTGGATGCAAGGAGGCTGCTATTGTTAAGAGATTTTTCCGTTTGAATCATCATGTGACGTACAATCATCAAGAGGCTGCGAAGTACGAGAATCATACGGAGAATGCTTTATTATTGTATATGGCATGTACACATGCCTCTAATCCTGTGTATGCAAGTCTGAAGATACGAATGTATTTCTATGATTCAGTGTCGAATTAA |
|
Protein Sequence
|
MSKRPGDIIISTPVSKVRRRLNFDSPYTNRAAVPIVQGISKRRSWTYRPSYRKPRMYRMYRSPDVPRGCEGPCKIQSFDQRDSVVHTGTVRCLSDVTRGGGLTHRTGKRFCIKSIYVLGKIWMDENVKKSNHTNTCMFWVVRDRRPYGPSPQDFGQVFNMFDNEPSTATVQNDKRDRYQVLRRFQVTVTGGPSGCKEAAIVKRFFRLNHHVTYNHQEAAKYENHTENALLLYMACTHASNPVYASLKIRMYFYDSVSN |
|
NCBI Accession
|
YP_009508150.1
|
|
Location
|
1073-1477 |
|
Gene Name
|
c3 |
|
Protein Name
|
C3 protein |
|
Coding Region
|
ATGGATTTACGCACAGGGGAACTCATCACTGCAGCTCAAGCACAGAGTGGCGTGTTTATCTGGGAGATACAAAATCCCCTATATTTCAAGATTATCAACCACGACAACCGGCCGTTCAACATGCCCCACGATATCATATCGATCCAGATAAGATTCAACCACAATTTGAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCAAGGTCTGGACGAGCTTACGCCCTCAGACTGGTCTTTTCTTAAGGGTATTTAAAACTCAAGTTTTAAATTATTTAGATAACATGGGTGTAATTTCAATTAGCAATGTAATTAGAGCAGTTGATCATGTATTGTACGATGTTATTGTAAAAACACTCCATGTTCAGGAGAATCATGAAATAAAATTCAAATTTTATTAA |
|
Protein Sequence
|
MDLRTGELITAAQAQSGVFIWEIQNPLYFKIINHDNRPFNMPHDIISIQIRFNHNLRKELGIHKCFLNFKVWTSLRPQTGLFLRVFKTQVLNYLDNMGVISISNVIRAVDHVLYDVIVKTLHVQENHEIKFKFY |
|
NCBI Accession
|
YP_009508151.1
|
|
Location
|
1218-1625 |
|
Gene Name
|
c2 |
|
Protein Name
|
C2 protein |
|
Coding Region
|
ATGCGACCTTCATCACCATCTACGAGCCACTGTACTCAACTGCCAATCAAAGTCCAGCACAAAACAGCCAAGAAGAAGGCAGTGAGGCGTAGAAGGATAGATCTCGACTGCGGCTGCTCATACTATCTCCACATCAGCTGCATCGACCATGGATTTACGCACAGGGGAACTCATCACTGCAGCTCAAGCACAGAGTGGCGTGTTTATCTGGGAGATACAAAATCCCCTATATTTCAAGATTATCAACCACGACAACCGGCCGTTCAACATGCCCCACGATATCATATCGATCCAGATAAGATTCAACCACAATTTGAGGAAGGAACTGGGGATTCACAAATGTTTTCTCAACTTCAAGGTCTGGACGAGCTTACGCCCTCAGACTGGTCTTTTCTTAAGGGTATTTAA |
|
Protein Sequence
|
MRPSSPSTSHCTQLPIKVQHKTAKKKAVRRRRIDLDCGCSYYLHISCIDHGFTHRGTHHCSSSTEWRVYLGDTKSPIFQDYQPRQPAVQHAPRYHIDPDKIQPQFEEGTGDSQMFSQLQGLDELTPSDWSFLKGI |
|
NCBI Accession
|
YP_009508152.1
|
|
Location
|
1534-2610 |
|
Gene Name
|
rep |
|
Protein Name
|
replication associated protein |
|
Coding Region
|
ATGAGAACTCCTCGTTTTAAAATTCAAGCCAAAAACATTTTCCTCACTTATCCAAAGTGTTCTCTTAGCAAAGAACACCTTCTATCCTTCTTACAAAACCTTTCACTTCCAACAAACCCTAAATATATCAAAATCTGCCTTGAACACCACCAGAATGGGGAACCTCATCTGCATGCCCTTATTCAATTCGAGGGAAAACTCACGTGCACCAACAATCGCCTCTTCGATTGCGTACACCCAAGCAGTAGCACCAGTTTCCACCCCAACATACAAGGAGCTAAGTCCAGCTCCGACGTCAAGTCCTATCTGGACAAAGACGGAGACACCCTCGAATGGGGAGAGTTTCAGATCGATGGACGATCTGCAAGGGGGGGACAACAATCGGCCAACGACGCTTACGCCGCAGCTCTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAGCCCCCAAAGATTTTGTTTTACAATTTCATAATTTAAATAGTAATTTAGATAGGATTTTTCAGGAGCCACCAGCTCCTTATGTTTCTCCTTTTTTATCTTCTTCTTTTACTCAAGTTCCGGAGGAACTTGAAGAGTGGGTTTCCGAGAACGTCATGGATGCCGCTGCGCGGCCGTGGAGACCTGTAAGTATAGTTATTGAGGGTGATAGTAGGACGGGGAAGACTATGTGGGCCAGATCATTAGGACCCCACAACTATTTGTGTGGTCATCTGGATCTAAGCCCAAAGGTGTACAGTAATGATGCGTGGTACAACGTCATTGATGACGTAGACCCGCATTATTTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACGAAGTACGGGAAACCAATTCAAATTAAAGGCGGAATTCCCACAATCTTCCTCTGCAATCCAGGACCAACATCCTCTTATAAGGAATATCTAGACGAGGATAAGAATGCACCCTTGAAAGCCTGGGCAACAAAGAATGCGACCTTCATCACCATCTACGAGCCACTGTACTCAACTGCCAATCAAAGTCCAGCACAAAACAGCCAAGAAGAAGGCAGTGAGGCGTAG |
|
Protein Sequence
|
MRTPRFKIQAKNIFLTYPKCSLSKEHLLSFLQNLSLPTNPKYIKICLEHHQNGEPHLHALIQFEGKLTCTNNRLFDCVHPSSSTSFHPNIQGAKSSSDVKSYLDKDGDTLEWGEFQIDGRSARGGQQSANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHNLNSNLDRIFQEPPAPYVSPFLSSSFTQVPEELEEWVSENVMDAAARPWRPVSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNAPLKAWATKNATFITIYEPLYSTANQSPAQNSQEEGSEA |
|
NCBI Accession
|
YP_009508153.1
|
|
Location
|
2154-2456 |
|
Gene Name
|
c4 |
|
Protein Name
|
C4 protein |
|
Coding Region
|
ATGGGGAACCTCATCTGCATGCCCTTATTCAATTCGAGGGAAAACTCACGTGCACCAACAATCGCCTCTTCGATTGCGTACACCCAAGCAGTAGCACCAGTTTCCACCCCAACATACAAGGAGCTAAGTCCAGCTCCGACGTCAAGTCCTATCTGGACAAAGACGGAGACACCCTCGAATGGGGAGAGTTTCAGATCGATGGACGATCTGCAAGGGGGGGACAACAATCGGCCAACGACGCTTACGCCGCAGCTCTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAATTAG |
|
Protein Sequence
|
MGNLICMPLFNSRENSRAPTIASSIAYTQAVAPVSTPTYKELSPAPTSSPIWTKTETPSNGESFRSMDDLQGGDNNRPTTLTPQLLTQAVSQRLLESLRN |