Tobacco curly shoot virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000859325.1 |
| Release date |
2015/2/13 |
| Submitter |
Li,Z.H., Zhou,X.P., Zhang,X., Xie,Y., Li,Z., Li,G., Zhang,Z., Zhou,X. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTTAAAGTGGGCCCCTTGATGTGATATGTCATCCAATCAAAATGCTCCCCCAAAGCTTAATTGTTTTGTGGTCCCTTATTTAAACTTGCTCACCAAGTAGTGCACTCCGCACTATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGCTTTAGGTGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACTTATTCGCCTGACACATTAGGGCACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGTCCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGAGCATGGGCGAACAGGCCCATGAACAGAAAACCCAGGATGTACAGGATGTACAGAAGTCCTGATGTCCCTAGAGGATGTGAAGGGCCATGTAAGGTCCAGTCTTTTGAGTCTAGACATGACATTCAGCATATAGGTAAAGTTATGTGTGTCAGTGATGTTACGCGTGGAACTGGGCTGACTCATCGAGTGGGTAAAAGGTTTTGTGTTAAATCCGTTTATGTCTTGGGTAAGATCTGGATGGATGAAAATATTAAGACCAAGAATCACACTAACAGTGTTATGTTTTTTTTAGTTAGGGATCGTAGGCCTGTGGATAAACCTCAAGATTTTGGAGAGGTTTTTAACATGTTTGATAATGAGCCCAGTACGGCTACTGTGAAGAATGTTCATCGTGATAGGTATCAAGTGCTTCGCAAATGGCATGCAACTGTTGCGGGTGGACAATATGCGTCGAAGGAACAAGCCTTTGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAAGCTGGCAAGTATGAAAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAATAAATATTAAATTTTATTGAATAAGATTGGTCTACATATACAATGTGTTCTAATACATCCCATAATACATGATCAACTGCACGAATTACATTATTAATACTGATAATTCCTAAATTATTTAAATATTTAAAAACTTGAGTCTTAAAGACCCTTAAGAAACGACCAGTCTGAGGCTGTGAAGTCATCCAGATTCGGTAGACTAGATAACATTTGTGCACTCCCAGAGCTTTCCGCAGGTTGTAGTTGAACTGTATTTGGATGGTGATTATGTCTTCTTTCATGAGAAATGGACGGTTCTGGTGCTCTATTATCTTGAAATAAAGGGGATTTTGAATCTCCCAGATATACACGCCATTCTTTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGATCGTGACAGGCTAGTGCTATGAAATATGAACATCCACAAGGGAGATCAACACGACGACGTCTGTTCCCCTTCTTGGCTAGCCTGTGCTTCACTTTGATTGGAACCTGAGTAGAGTGGGCTTTCGAGGGTGACGAAGATCGCATTCTTTAAAGCCCAATTTTTAAGAGCTGTATTTTTCTCTTCATCCAAGAATTCTTTATAGCTAGAGTTGGGTCCTGGATTGCAGAGAAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTGGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGCGGATCTACGTCATCAATGACGTTATACCAAGCATCATTATTGTACACCTTAGGGCTTAGATCTAAATGACCACACAAGTAATTATGTGGTCCCAATGACCTGGCCCACATCGTCTTCCCTGTTCTACTGTCACCCTCTATGACTATACTCATGGGTCTCAATGGCCGCGCAGCGGCACTGACGACATTCTCGGCAGCCCATTCGTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGATAAAAAAGGAGAAATGTATTCCTCTATCGGGGGAGTAAAAATCCTATCTAAATTAGAATTTAAATTATGAAACTGTAATACAAAATCTTTAGGGGCCTTTTCCCTTAGTATATTGAGGGCCGAAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCCGATCTTCCATCGATCTGGAAAATTCCATGATCAAGGACGTCTCCGTCTTTTTCCATGTATGTTTTAACATCTGTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGATCGGGTTGGGGATGTGAGATCGAAGAATCTTTGGTTTTTACACTGGAATTTTCCTTCGAATTGGATGAGGACATGCAGGTGAGGAGTCCCATCTTCATGGAGTTCCCTGCAGATTCTGATGAATAATTTATTAATTGGTGTTTCTAGGGCTTTAATTTGGGAAAGTGCCTCTTCTTTAGTGAGAGAACAATGTGGGTATGTGAGGAAATAGTTCTTGGCATTTATTCTGAATTTATTAGGAGGAGCCATTGACTGGTCAATCGGTGTCTCTCAAACTTGGCTATGCAATCGGTGTCTGGGGTCTTATTTATATGTGGACACCAAATGGCATAATTGTAATTTAGTAAATGTAATTCAAAATTCAAAATCCAAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
NP_620420.1
|
|
Location
|
134-481 |
|
Gene Name
|
AV2 |
|
Protein Name
|
AV2 protein |
|
Coding Region
|
ATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGCTTTAGGTGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACTTATTCGCCTGACACATTAGGGCACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGTCCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGAGCATGGGCGAACAGGCCCATGAACAGAAAACCCAGGATGTACAGGATGTACAGAAGTCCTGA |
|
Protein Sequence
|
MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGHDLIRDLISVIRARNYVEASSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQKTQDVQDVQKS |
|
NCBI Accession
|
NP_620421.1
|
|
Location
|
294-1064 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGTCCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGAGCATGGGCGAACAGGCCCATGAACAGAAAACCCAGGATGTACAGGATGTACAGAAGTCCTGATGTCCCTAGAGGATGTGAAGGGCCATGTAAGGTCCAGTCTTTTGAGTCTAGACATGACATTCAGCATATAGGTAAAGTTATGTGTGTCAGTGATGTTACGCGTGGAACTGGGCTGACTCATCGAGTGGGTAAAAGGTTTTGTGTTAAATCCGTTTATGTCTTGGGTAAGATCTGGATGGATGAAAATATTAAGACCAAGAATCACACTAACAGTGTTATGTTTTTTTTAGTTAGGGATCGTAGGCCTGTGGATAAACCTCAAGATTTTGGAGAGGTTTTTAACATGTTTGATAATGAGCCCAGTACGGCTACTGTGAAGAATGTTCATCGTGATAGGTATCAAGTGCTTCGCAAATGGCATGCAACTGTTGCGGGTGGACAATATGCGTCGAAGGAACAAGCCTTTGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAAGCTGGCAAGTATGAAAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAA |
|
Protein Sequence
|
MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKARAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVAGGQYASKEQAFVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
|
NCBI Accession
|
NP_620422.1
|
|
Location
|
1061-1465 |
|
Gene Name
|
AC3 |
|
Protein Name
|
AC3 protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAAAGAATGGCGTGTATATCTGGGAGATTCAAAATCCCCTTTATTTCAAGATAATAGAGCACCAGAACCGTCCATTTCTCATGAAAGAAGACATAATCACCATCCAAATACAGTTCAACTACAACCTGCGGAAAGCTCTGGGAGTGCACAAATGTTATCTAGTCTACCGAATCTGGATGACTTCACAGCCTCAGACTGGTCGTTTCTTAAGGGTCTTTAAGACTCAAGTTTTTAAATATTTAAATAATTTAGGAATTATCAGTATTAATAATGTAATTCGTGCAGTTGATCATGTATTATGGGATGTATTAGAACACATTGTATATGTAGACCAATCTTATTCAATAAAATTTAATATTTATTAA |
|
Protein Sequence
|
MDSRTGELITAAQAKNGVYIWEIQNPLYFKIIEHQNRPFLMKEDIITIQIQFNYNLRKALGVHKCYLVYRIWMTSQPQTGRFLRVFKTQVFKYLNNLGIISINNVIRAVDHVLWDVLEHIVYVDQSYSIKFNIY |
|
NCBI Accession
|
NP_620423.1
|
|
Location
|
1206-1610 |
|
Gene Name
|
AC2 |
|
Protein Name
|
AC2 protein |
|
Coding Region
|
ATGCGATCTTCGTCACCCTCGAAAGCCCACTCTACTCAGGTTCCAATCAAAGTGAAGCACAGGCTAGCCAAGAAGGGGAACAGACGTCGTCGTGTTGATCTCCCTTGTGGATGTTCATATTTCATAGCACTAGCCTGTCACGATCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAAAGAATGGCGTGTATATCTGGGAGATTCAAAATCCCCTTTATTTCAAGATAATAGAGCACCAGAACCGTCCATTTCTCATGAAAGAAGACATAATCACCATCCAAATACAGTTCAACTACAACCTGCGGAAAGCTCTGGGAGTGCACAAATGTTATCTAGTCTACCGAATCTGGATGACTTCACAGCCTCAGACTGGTCGTTTCTTAAGGGTCTTTAA |
|
Protein Sequence
|
MRSSSPSKAHSTQVPIKVKHRLAKKGNRRRRVDLPCGCSYFIALACHDHGFTHRGTHHCSSSKEWRVYLGDSKSPLFQDNRAPEPSISHERRHNHHPNTVQLQPAESSGSAQMLSSLPNLDDFTASDWSFLKGL |
|
NCBI Accession
|
NP_620424.1
|
|
Location
|
1513-2598 |
|
Gene Name
|
AC1 |
|
Protein Name
|
AC1 protein |
|
Coding Region
|
ATGGCTCCTCCTAATAAATTCAGAATAAATGCCAAGAACTATTTCCTCACATACCCACATTGTTCTCTCACTAAAGAAGAGGCACTTTCCCAAATTAAAGCCCTAGAAACACCAATTAATAAATTATTCATCAGAATCTGCAGGGAACTCCATGAAGATGGGACTCCTCACCTGCATGTCCTCATCCAATTCGAAGGAAAATTCCAGTGTAAAAACCAAAGATTCTTCGATCTCACATCCCCAACCCGATCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTTAAAACATACATGGAAAAAGACGGAGACGTCCTTGATCATGGAATTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTTCGGCCCTCAATATACTAAGGGAAAAGGCCCCTAAAGATTTTGTATTACAGTTTCATAATTTAAATTCTAATTTAGATAGGATTTTTACTCCCCCGATAGAGGAATACATTTCTCCTTTTTTATCTTCTTCTTTCGATCAAGTTCCAGAAGAACTTGACGAATGGGCTGCCGAGAATGTCGTCAGTGCCGCTGCGCGGCCATTGAGACCCATGAGTATAGTCATAGAGGGTGACAGTAGAACAGGGAAGACGATGTGGGCCAGGTCATTGGGACCACATAATTACTTGTGTGGTCATTTAGATCTAAGCCCTAAGGTGTACAATAATGATGCTTGGTATAACGTCATTGATGACGTAGATCCGCACTACCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGAGACTGGCAAAGCAATACCAAGTACGGGAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTTCTCTGCAATCCAGGACCCAACTCTAGCTATAAAGAATTCTTGGATGAAGAGAAAAATACAGCTCTTAAAAATTGGGCTTTAAAGAATGCGATCTTCGTCACCCTCGAAAGCCCACTCTACTCAGGTTCCAATCAAAGTGAAGCACAGGCTAGCCAAGAAGGGGAACAGACGTCGTCGTGTTGA |
|
Protein Sequence
|
MAPPNKFRINAKNYFLTYPHCSLTKEEALSQIKALETPINKLFIRICRELHEDGTPHLHVLIQFEGKFQCKNQRFFDLTSPTRSAHFHPNIQGAKSSTDVKTYMEKDGDVLDHGIFQIDGRSARGGCQSANDAYAEAINSGSKASALNILREKAPKDFVLQFHNLNSNLDRIFTPPIEEYISPFLSSSFDQVPEELDEWAAENVVSAAARPLRPMSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWALKNAIFVTLESPLYSGSNQSEAQASQEGEQTSSC |
|
NCBI Accession
|
NP_620425.1
|
|
Location
|
2148-2447 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGAAGATGGGACTCCTCACCTGCATGTCCTCATCCAATTCGAAGGAAAATTCCAGTGTAAAAACCAAAGATTCTTCGATCTCACATCCCCAACCCGATCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTTAAAACATACATGGAAAAAGACGGAGACGTCCTTGATCATGGAATTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTTCGGCCCTCAATATACTAA |
|
Protein Sequence
|
MKMGLLTCMSSSNSKENSSVKTKDSSISHPQPDQHISIRTFRELKAQQMLKHTWKKTETSLIMEFSRSMEDRLEEVANLPTTHMPRQSIQGPKLRPSIY |