Tobacco curly shoot virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000859325.1
Release date 2015/2/13
Submitter Li,Z.H., Zhou,X.P., Zhang,X., Xie,Y., Li,Z., Li,G., Zhang,Z., Zhou,X.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_003722
ACCGGATGGCCGCGATTTTTTTTAAAGTGGGCCCCTTGATGTGATATGTCATCCAATCAAAATGCTCCCCCAAAGCTTAATTGTTTTGTGGTCCCTTATTTAAACTTGCTCACCAAGTAGTGCACTCCGCACTATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGCTTTAGGTGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACTTATTCGCCTGACACATTAGGGCACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGTCCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGAGCATGGGCGAACAGGCCCATGAACAGAAAACCCAGGATGTACAGGATGTACAGAAGTCCTGATGTCCCTAGAGGATGTGAAGGGCCATGTAAGGTCCAGTCTTTTGAGTCTAGACATGACATTCAGCATATAGGTAAAGTTATGTGTGTCAGTGATGTTACGCGTGGAACTGGGCTGACTCATCGAGTGGGTAAAAGGTTTTGTGTTAAATCCGTTTATGTCTTGGGTAAGATCTGGATGGATGAAAATATTAAGACCAAGAATCACACTAACAGTGTTATGTTTTTTTTAGTTAGGGATCGTAGGCCTGTGGATAAACCTCAAGATTTTGGAGAGGTTTTTAACATGTTTGATAATGAGCCCAGTACGGCTACTGTGAAGAATGTTCATCGTGATAGGTATCAAGTGCTTCGCAAATGGCATGCAACTGTTGCGGGTGGACAATATGCGTCGAAGGAACAAGCCTTTGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAAGCTGGCAAGTATGAAAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAATAAATATTAAATTTTATTGAATAAGATTGGTCTACATATACAATGTGTTCTAATACATCCCATAATACATGATCAACTGCACGAATTACATTATTAATACTGATAATTCCTAAATTATTTAAATATTTAAAAACTTGAGTCTTAAAGACCCTTAAGAAACGACCAGTCTGAGGCTGTGAAGTCATCCAGATTCGGTAGACTAGATAACATTTGTGCACTCCCAGAGCTTTCCGCAGGTTGTAGTTGAACTGTATTTGGATGGTGATTATGTCTTCTTTCATGAGAAATGGACGGTTCTGGTGCTCTATTATCTTGAAATAAAGGGGATTTTGAATCTCCCAGATATACACGCCATTCTTTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGATCGTGACAGGCTAGTGCTATGAAATATGAACATCCACAAGGGAGATCAACACGACGACGTCTGTTCCCCTTCTTGGCTAGCCTGTGCTTCACTTTGATTGGAACCTGAGTAGAGTGGGCTTTCGAGGGTGACGAAGATCGCATTCTTTAAAGCCCAATTTTTAAGAGCTGTATTTTTCTCTTCATCCAAGAATTCTTTATAGCTAGAGTTGGGTCCTGGATTGCAGAGAAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTACTTGGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGCGGATCTACGTCATCAATGACGTTATACCAAGCATCATTATTGTACACCTTAGGGCTTAGATCTAAATGACCACACAAGTAATTATGTGGTCCCAATGACCTGGCCCACATCGTCTTCCCTGTTCTACTGTCACCCTCTATGACTATACTCATGGGTCTCAATGGCCGCGCAGCGGCACTGACGACATTCTCGGCAGCCCATTCGTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGATAAAAAAGGAGAAATGTATTCCTCTATCGGGGGAGTAAAAATCCTATCTAAATTAGAATTTAAATTATGAAACTGTAATACAAAATCTTTAGGGGCCTTTTCCCTTAGTATATTGAGGGCCGAAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCCGATCTTCCATCGATCTGGAAAATTCCATGATCAAGGACGTCTCCGTCTTTTTCCATGTATGTTTTAACATCTGTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGATCGGGTTGGGGATGTGAGATCGAAGAATCTTTGGTTTTTACACTGGAATTTTCCTTCGAATTGGATGAGGACATGCAGGTGAGGAGTCCCATCTTCATGGAGTTCCCTGCAGATTCTGATGAATAATTTATTAATTGGTGTTTCTAGGGCTTTAATTTGGGAAAGTGCCTCTTCTTTAGTGAGAGAACAATGTGGGTATGTGAGGAAATAGTTCTTGGCATTTATTCTGAATTTATTAGGAGGAGCCATTGACTGGTCAATCGGTGTCTCTCAAACTTGGCTATGCAATCGGTGTCTGGGGTCTTATTTATATGTGGACACCAAATGGCATAATTGTAATTTAGTAAATGTAATTCAAAATTCAAAATCCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession NP_620420.1
Location 134-481
Gene Name AV2
Protein Name AV2 protein
Coding Region ATGTGGGATCCATTAGTAAACGAGTTTCCCGAAACCGTTCACGGCTTTAGGTGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACTTATTCGCCTGACACATTAGGGCACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGTCCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGAGCATGGGCGAACAGGCCCATGAACAGAAAACCCAGGATGTACAGGATGTACAGAAGTCCTGA
Protein Sequence MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGHDLIRDLISVIRARNYVEASSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQKTQDVQDVQKS

NCBI Accession NP_620421.1
Location 294-1064
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGTCCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGAGCATGGGCGAACAGGCCCATGAACAGAAAACCCAGGATGTACAGGATGTACAGAAGTCCTGATGTCCCTAGAGGATGTGAAGGGCCATGTAAGGTCCAGTCTTTTGAGTCTAGACATGACATTCAGCATATAGGTAAAGTTATGTGTGTCAGTGATGTTACGCGTGGAACTGGGCTGACTCATCGAGTGGGTAAAAGGTTTTGTGTTAAATCCGTTTATGTCTTGGGTAAGATCTGGATGGATGAAAATATTAAGACCAAGAATCACACTAACAGTGTTATGTTTTTTTTAGTTAGGGATCGTAGGCCTGTGGATAAACCTCAAGATTTTGGAGAGGTTTTTAACATGTTTGATAATGAGCCCAGTACGGCTACTGTGAAGAATGTTCATCGTGATAGGTATCAAGTGCTTCGCAAATGGCATGCAACTGTTGCGGGTGGACAATATGCGTCGAAGGAACAAGCCTTTGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAAGCTGGCAAGTATGAAAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTAACAAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKARAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVAGGQYASKEQAFVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession NP_620422.1
Location 1061-1465
Gene Name AC3
Protein Name AC3 protein
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAAAGAATGGCGTGTATATCTGGGAGATTCAAAATCCCCTTTATTTCAAGATAATAGAGCACCAGAACCGTCCATTTCTCATGAAAGAAGACATAATCACCATCCAAATACAGTTCAACTACAACCTGCGGAAAGCTCTGGGAGTGCACAAATGTTATCTAGTCTACCGAATCTGGATGACTTCACAGCCTCAGACTGGTCGTTTCTTAAGGGTCTTTAAGACTCAAGTTTTTAAATATTTAAATAATTTAGGAATTATCAGTATTAATAATGTAATTCGTGCAGTTGATCATGTATTATGGGATGTATTAGAACACATTGTATATGTAGACCAATCTTATTCAATAAAATTTAATATTTATTAA
Protein Sequence MDSRTGELITAAQAKNGVYIWEIQNPLYFKIIEHQNRPFLMKEDIITIQIQFNYNLRKALGVHKCYLVYRIWMTSQPQTGRFLRVFKTQVFKYLNNLGIISINNVIRAVDHVLWDVLEHIVYVDQSYSIKFNIY

NCBI Accession NP_620423.1
Location 1206-1610
Gene Name AC2
Protein Name AC2 protein
Coding Region ATGCGATCTTCGTCACCCTCGAAAGCCCACTCTACTCAGGTTCCAATCAAAGTGAAGCACAGGCTAGCCAAGAAGGGGAACAGACGTCGTCGTGTTGATCTCCCTTGTGGATGTTCATATTTCATAGCACTAGCCTGTCACGATCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCAAAGAATGGCGTGTATATCTGGGAGATTCAAAATCCCCTTTATTTCAAGATAATAGAGCACCAGAACCGTCCATTTCTCATGAAAGAAGACATAATCACCATCCAAATACAGTTCAACTACAACCTGCGGAAAGCTCTGGGAGTGCACAAATGTTATCTAGTCTACCGAATCTGGATGACTTCACAGCCTCAGACTGGTCGTTTCTTAAGGGTCTTTAA
Protein Sequence MRSSSPSKAHSTQVPIKVKHRLAKKGNRRRRVDLPCGCSYFIALACHDHGFTHRGTHHCSSSKEWRVYLGDSKSPLFQDNRAPEPSISHERRHNHHPNTVQLQPAESSGSAQMLSSLPNLDDFTASDWSFLKGL

NCBI Accession NP_620424.1
Location 1513-2598
Gene Name AC1
Protein Name AC1 protein
Coding Region ATGGCTCCTCCTAATAAATTCAGAATAAATGCCAAGAACTATTTCCTCACATACCCACATTGTTCTCTCACTAAAGAAGAGGCACTTTCCCAAATTAAAGCCCTAGAAACACCAATTAATAAATTATTCATCAGAATCTGCAGGGAACTCCATGAAGATGGGACTCCTCACCTGCATGTCCTCATCCAATTCGAAGGAAAATTCCAGTGTAAAAACCAAAGATTCTTCGATCTCACATCCCCAACCCGATCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTTAAAACATACATGGAAAAAGACGGAGACGTCCTTGATCATGGAATTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTTCGGCCCTCAATATACTAAGGGAAAAGGCCCCTAAAGATTTTGTATTACAGTTTCATAATTTAAATTCTAATTTAGATAGGATTTTTACTCCCCCGATAGAGGAATACATTTCTCCTTTTTTATCTTCTTCTTTCGATCAAGTTCCAGAAGAACTTGACGAATGGGCTGCCGAGAATGTCGTCAGTGCCGCTGCGCGGCCATTGAGACCCATGAGTATAGTCATAGAGGGTGACAGTAGAACAGGGAAGACGATGTGGGCCAGGTCATTGGGACCACATAATTACTTGTGTGGTCATTTAGATCTAAGCCCTAAGGTGTACAATAATGATGCTTGGTATAACGTCATTGATGACGTAGATCCGCACTACCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGAGACTGGCAAAGCAATACCAAGTACGGGAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTTCTCTGCAATCCAGGACCCAACTCTAGCTATAAAGAATTCTTGGATGAAGAGAAAAATACAGCTCTTAAAAATTGGGCTTTAAAGAATGCGATCTTCGTCACCCTCGAAAGCCCACTCTACTCAGGTTCCAATCAAAGTGAAGCACAGGCTAGCCAAGAAGGGGAACAGACGTCGTCGTGTTGA
Protein Sequence MAPPNKFRINAKNYFLTYPHCSLTKEEALSQIKALETPINKLFIRICRELHEDGTPHLHVLIQFEGKFQCKNQRFFDLTSPTRSAHFHPNIQGAKSSTDVKTYMEKDGDVLDHGIFQIDGRSARGGCQSANDAYAEAINSGSKASALNILREKAPKDFVLQFHNLNSNLDRIFTPPIEEYISPFLSSSFDQVPEELDEWAAENVVSAAARPLRPMSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWALKNAIFVTLESPLYSGSNQSEAQASQEGEQTSSC

NCBI Accession NP_620425.1
Location 2148-2447
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGAAGATGGGACTCCTCACCTGCATGTCCTCATCCAATTCGAAGGAAAATTCCAGTGTAAAAACCAAAGATTCTTCGATCTCACATCCCCAACCCGATCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTTAAAACATACATGGAAAAAGACGGAGACGTCCTTGATCATGGAATTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTTCGGCCCTCAATATACTAA
Protein Sequence MKMGLLTCMSSSNSKENSSVKTKDSSISHPQPDQHISIRTFRELKAQQMLKHTWKKTETSLIMEFSRSMEDRLEEVANLPTTHMPRQSIQGPKLRPSIY

References More References in PubMed

1

Tobacco curly shoot virus Down-Regulated the Expression of nbe-miR167b-3p to Facilitate Its Infection in Nicotiana benthamiana.

Wu R, et al.  Front Microbiol. 2021 Dec 16;12:791561. doi: 10.3389/fmicb.2021.791561. eCollection 2021.

PMID: 34975814
2

vsiRNA18 derived from tobacco curly shoot virus can regulate virus infection in Nicotiana benthamiana.

Wu R, et al.  Mol Plant Pathol. 2023 May;24(5):466-473. doi: 10.1111/mpp.13310. Epub 2023 Feb 16.

PMID: 36797647
3

Transcriptome analysis of Nicotiana benthamiana infected by Tobacco curly shoot virus.

Li K, et al.  Virol J. 2018 Sep 3;15(1):138. doi: 10.1186/s12985-018-1044-1.

PMID: 30176884
4

Characterization of Pathogenicity-Associated V2 Protein of Tobacco Curly Shoot Virus.

Li M, et al.  Int J Mol Sci. 2021 Jan 18;22(2):923. doi: 10.3390/ijms22020923.

PMID: 33477652
5

Tobacco curly shoot virus C3 protein enhances viral replication and gene expression in Nicotiana benthamiana plants.

Sun M, et al.  Virus Res. 2020 May;281:197939. doi: 10.1016/j.virusres.2020.197939. Epub 2020 Mar 18.

PMID: 32198077
6

Molecular characterization of virus-derived small RNAs in Nicotiana benthamiana plants infected with tobacco curly shoot virus and its β satellite.

Wu G, et al.  Virus Res. 2019 May;265:10-19. doi: 10.1016/j.virusres.2019.02.017. Epub 2019 Mar 1.

PMID: 30831178
7

Identification of microRNAs regulated by tobacco curly shoot virus co-infection with its betasatellite in Nicotiana benthamiana.

Du J, et al.  Virol J. 2019 Nov 7;16(1):130. doi: 10.1186/s12985-019-1234-5.

PMID: 31699111
8

Suppression of nbe-miR1919c-5p Expression in Nicotiana benthamiana Enhances Tobacco Curly Shoot Virus and Its Betasatellite Co-Infection.

Du J, et al.  Viruses. 2020 Apr 1;12(4):392. doi: 10.3390/v12040392.

PMID: 32244650
9

First Report of Tobacco curly shoot virus Infecting Pepper in China.

Qing L, et al.  Plant Dis. 2010 May;94(5):637. doi: 10.1094/PDIS-94-5-0637A.

PMID: 30754455
10

A recombinant Tobacco curly shoot virus causes leaf curl disease in tomato in a north-eastern state of India and has potentiality to trans-replicate a non-cognate betasatellite.

Shilpi S, et al.  Virus Genes. 2015 Feb;50(1):87-96. doi: 10.1007/s11262-014-1141-1. Epub 2014 Nov 20.

PMID: 25410052