Sweet potato mosaic virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_001967215.1
Isolate South Africa
Release date 2017/1/20
Submitter Nhlapo,T.F., Rees,J.D.G., Mulabisana,J., Rey,C.M.E.C., Odeny,D.A., Esterhuizen,L.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_033334
ACCGGTGCCCGCGCCGCACTTTAATTGTGGGCCCCACTCGTTACTTTAATCATTTAAAGCAATTCCCTGTTGCAGACTTGGTCGCCAAGTATGGATTTGTGGGACCCTTTGCAGAATCCACTCCCGGAGACTTTATACGGTCTCCGGTGTATGCTTTCTGTTAAATACTTGCAGAGTATTTCGAAGAAATACGAGCCAGGAACCCTAGGGTTCGAGTTGTGCTCCGATTTAATCCGCATTCTGCGGGTTCGTCAGTATGACAGGGCGAATGCGCGTTACGCGGAGATTTCATCCGTATGGGGGGACTCCGGCAAGACGGAGGCTGAACTTCGAGACCGCTATCGTGCCTTACACTGGGAATGCTGTCCCAATTGCTGCCCGAAGCTATGTCCCGATTTCAAGAAGCGTTCAGATGAAGAGAAAGAAGGGGGATCGAATCCCTAAGGGATGTGTGGGTCCTTGTAAGGTCCAGGATTACGAGTTTAAGATGGATGTCCCACATAGTGGGACCTTTGTGTGTGTGTCTGATTTTACTAGAGGTACTGGGCTTACTCATCGTCTGGGTAAGCGTGTGTGTATTAAGTCCATGGGTATTGACGGTAAGGTCTGGATGGATGACAACGTCGCTAAGAGGGATCACACTAACATAATTACTTACTGGTTGATCCGAGATAGAAGGCCCAATAAGGACCCCTTGACTTTTGTACAGGTGTTCACCATGTATGATAATGAGCCCACCACTGCTAAGATCCGAATGGATCTGAGAGATAGAATGCAGGTTTTGAAGAAGTTTTCTGTGAATGTATCTGGTGGGCCTTACAACCACAAGGAGCAGGCTCTGGTTAGGAAGTTTTTTAAGGGATTGTATAATCATGTTACTTACAACCACAAGGAAGAAGCTAAGTACGAGAACCATTTGGAAAATGCTTTGATGTTGTATTCTGCTAGCAGTCATGCTAGCAATCCTGTATACCAGACCCTGCGTTGCAGGGCTTATTTTTATGATTCGCACAATAATTAATAAAGAAGTAGTTTTATATCATCTTTGCAATCTATTACATCAACTTCTTCTACCCATAAACATGATGATGGGAGATTTCTAATTACATAAACTAAATTTAACAATGAAAAATAACCTAAACTAACTAAGCTATTACATATGCGCCATTTAAGGCGTGTTAAAATACCAGTCCAACTGTGAATAACACCAGTCAGACGCGTTGTTATGATTCGGAACTGGAGGAAGATCTTCTGGAATCCAATTTCCCTCCTGTTCCTGTGGTTGACTTGAAGCTGAAACTTCATGATCTTCCTTGTGTTTAGGTTGTTTGAATGGACATACATCAACCGTAGATGGAATGGGGCAGTCTGACCCGCAGACATGGGGTTGTTGAAGAATTCTGCAGCTCTCGTAATCTGTGCATGACTTAGTGACTCCCCTGTGCGTAAATCCATGCTGGAACTTGCAGTCGTTGGTGATGAAGGCTGAGCAGCCGCAGCCCTTCCACACTATTCTTGTCCTAGGCTCAGGAGTCTTCCTCTGCTTCTTCTTGGCTGCTGCGTGTATTGGCTCCTGAAGTGGACACTTCCTCTTGTATCCAGAAGGGGCTGTCGACATCACAGAAAATTGCGTTCTTTACAGCCCAGTTCTTGAGTGCTTCTTGCTCTGGCTTGTCCAGCCAGAGTTTAAATGAAGACCCTTCTCCTGGATTGCAGAGAAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTACAGTTGCTTTGCCAGTCCTTCTGGGCCCCCATAAATTCTTTAAAGTGCTTTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTATACACTTTTGGACTCAAGTCCAGGTGTCCACACAAATAATTATGAGGACCTAATGACCGAGCCCATACTGTTTTTCCTATTCTACTTGGGCCTTCTATAACTATACTTATGGGCCTATCCGGCCGCGCAGCGGAATCCATGACATTTTCAGCGGCCCAATCGCTGATAATGTCAGGTACATTATTGAAGGAAGAAAGAGAAAAAGGAGAAGAATACACAGAAGGAGGAGGAGAGAAAATCCTATCTAAATTCGAACATAAATTATGATATTGAAAAATAAATTTTTCAGGGAGTTTCTCCCTGATTATTTGTAAGGCAGCTTCTTTGCTGCCGGAATTAAGTGCCTCTGCTGCTGCGTCATTAGCCGTTTGCTGGCCTCCTCTAGCAGATCTTCCGTCGATTTGAAATTCGCCCCAAGTGAGGGTATCTCCATCCTTATCGACGTAGGACTTGACATCGGAGCTGGATTTAGCTCCCTGTATGTTTGGATGGAAATGTGCTGACCTGGTTGGAGAGACCAGGTCGAATAGGCGTTGGTTCGTGCAGACGAACTTGCCTTCGAACTGGAGAAGCACGTGGATATGAGGCTGCCCATCTTCGTGCAGTTCTCTAGCTATGTGAATATATTTTTTATTCACAGGTGTTTGAAATTTTTGGAGTTGGGCGAGAACTTCTTCTTTAGAGAGAGAGCAATGCGGATAAGTAAGGAAGTAATTTTTAGCTTGTATTTTAAATCGTTTAGGAGGAGCCATTGACTTAGTCAATTGGAGACACCCAAACTTGCTGAATGAATTGGATATCGGAGTACAATATATACCCTGTCTCCAAATGGCATTATGGTAATTTTAACAACTTTAATTTGAATTCTGAAATCTCATTGGTCCGCCATAAAGCGGGCACCGTATTAATATT

Gene Information

NCBI Accession YP_009337999.1
Location 91-444
Protein Name V2
Coding Region ATGGATTTGTGGGACCCTTTGCAGAATCCACTCCCGGAGACTTTATACGGTCTCCGGTGTATGCTTTCTGTTAAATACTTGCAGAGTATTTCGAAGAAATACGAGCCAGGAACCCTAGGGTTCGAGTTGTGCTCCGATTTAATCCGCATTCTGCGGGTTCGTCAGTATGACAGGGCGAATGCGCGTTACGCGGAGATTTCATCCGTATGGGGGGACTCCGGCAAGACGGAGGCTGAACTTCGAGACCGCTATCGTGCCTTACACTGGGAATGCTGTCCCAATTGCTGCCCGAAGCTATGTCCCGATTTCAAGAAGCGTTCAGATGAAGAGAAAGAAGGGGGATCGAATCCCTAA
Protein Sequence MDLWDPLQNPLPETLYGLRCMLSVKYLQSISKKYEPGTLGFELCSDLIRILRVRQYDRANARYAEISSVWGDSGKTEAELRDRYRALHWECCPNCCPKLCPDFKKRSDEEKEGGSNP

NCBI Accession YP_009338000.1
Location 257-1021
Protein Name coat protein
Coding Region ATGACAGGGCGAATGCGCGTTACGCGGAGATTTCATCCGTATGGGGGGACTCCGGCAAGACGGAGGCTGAACTTCGAGACCGCTATCGTGCCTTACACTGGGAATGCTGTCCCAATTGCTGCCCGAAGCTATGTCCCGATTTCAAGAAGCGTTCAGATGAAGAGAAAGAAGGGGGATCGAATCCCTAAGGGATGTGTGGGTCCTTGTAAGGTCCAGGATTACGAGTTTAAGATGGATGTCCCACATAGTGGGACCTTTGTGTGTGTGTCTGATTTTACTAGAGGTACTGGGCTTACTCATCGTCTGGGTAAGCGTGTGTGTATTAAGTCCATGGGTATTGACGGTAAGGTCTGGATGGATGACAACGTCGCTAAGAGGGATCACACTAACATAATTACTTACTGGTTGATCCGAGATAGAAGGCCCAATAAGGACCCCTTGACTTTTGTACAGGTGTTCACCATGTATGATAATGAGCCCACCACTGCTAAGATCCGAATGGATCTGAGAGATAGAATGCAGGTTTTGAAGAAGTTTTCTGTGAATGTATCTGGTGGGCCTTACAACCACAAGGAGCAGGCTCTGGTTAGGAAGTTTTTTAAGGGATTGTATAATCATGTTACTTACAACCACAAGGAAGAAGCTAAGTACGAGAACCATTTGGAAAATGCTTTGATGTTGTATTCTGCTAGCAGTCATGCTAGCAATCCTGTATACCAGACCCTGCGTTGCAGGGCTTATTTTTATGATTCGCACAATAATTAA
Protein Sequence MTGRMRVTRRFHPYGGTPARRRLNFETAIVPYTGNAVPIAARSYVPISRSVQMKRKKGDRIPKGCVGPCKVQDYEFKMDVPHSGTFVCVSDFTRGTGLTHRLGKRVCIKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLTFVQVFTMYDNEPTTAKIRMDLRDRMQVLKKFSVNVSGGPYNHKEQALVRKFFKGLYNHVTYNHKEEAKYENHLENALMLYSASSHASNPVYQTLRCRAYFYDSHNN

NCBI Accession YP_009338001.1
Location 1018-1455
Protein Name replication enhancer protein
Coding Region ATGGATTTACGCACAGGGGAGTCACTAAGTCATGCACAGATTACGAGAGCTGCAGAATTCTTCAACAACCCCATGTCTGCGGGTCAGACTGCCCCATTCCATCTACGGTTGATGTATGTCCATTCAAACAACCTAAACACAAGGAAGATCATGAAGTTTCAGCTTCAAGTCAACCACAGGAACAGGAGGGAAATTGGATTCCAGAAGATCTTCCTCCAGTTCCGAATCATAACAACGCGTCTGACTGGTGTTATTCACAGTTGGACTGGTATTTTAACACGCCTTAAATGGCGCATATGTAATAGCTTAGTTAGTTTAGGTTATTTTTCATTGTTAAATTTAGTTTATGTAATTAGAAATCTCCCATCATCATGTTTATGGGTAGAAGAAGTTGATGTAATAGATTGCAAAGATGATATAAAACTACTTCTTTATTAA
Protein Sequence MDLRTGESLSHAQITRAAEFFNNPMSAGQTAPFHLRLMYVHSNNLNTRKIMKFQLQVNHRNRREIGFQKIFLQFRIITTRLTGVIHSWTGILTRLKWRICNSLVSLGYFSLLNLVYVIRNLPSSCLWVEEVDVIDCKDDIKLLLY

NCBI Accession YP_009338002.1
Location 1169-1618
Protein Name trans-activating protein
Coding Region ATGTCGACAGCCCCTTCTGGATACAAGAGGAAGTGTCCACTTCAGGAGCCAATACACGCAGCAGCCAAGAAGAAGCAGAGGAAGACTCCTGAGCCTAGGACAAGAATAGTGTGGAAGGGCTGCGGCTGCTCAGCCTTCATCACCAACGACTGCAAGTTCCAGCATGGATTTACGCACAGGGGAGTCACTAAGTCATGCACAGATTACGAGAGCTGCAGAATTCTTCAACAACCCCATGTCTGCGGGTCAGACTGCCCCATTCCATCTACGGTTGATGTATGTCCATTCAAACAACCTAAACACAAGGAAGATCATGAAGTTTCAGCTTCAAGTCAACCACAGGAACAGGAGGGAAATTGGATTCCAGAAGATCTTCCTCCAGTTCCGAATCATAACAACGCGTCTGACTGGTGTTATTCACAGTTGGACTGGTATTTTAACACGCCTTAA
Protein Sequence MSTAPSGYKRKCPLQEPIHAAAKKKQRKTPEPRTRIVWKGCGCSAFITNDCKFQHGFTHRGVTKSCTDYESCRILQQPHVCGSDCPIPSTVDVCPFKQPKHKEDHEVSASSQPQEQEGNWIPEDLPPVPNHNNASDWCYSQLDWYFNTP

NCBI Accession YP_009338003.1
Location 1527-2621
Protein Name replication-associated protein
Coding Region ATGGCTCCTCCTAAACGATTTAAAATACAAGCTAAAAATTACTTCCTTACTTATCCGCATTGCTCTCTCTCTAAAGAAGAAGTTCTCGCCCAACTCCAAAAATTTCAAACACCTGTGAATAAAAAATATATTCACATAGCTAGAGAACTGCACGAAGATGGGCAGCCTCATATCCACGTGCTTCTCCAGTTCGAAGGCAAGTTCGTCTGCACGAACCAACGCCTATTCGACCTGGTCTCTCCAACCAGGTCAGCACATTTCCATCCAAACATACAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTACGTCGATAAGGATGGAGATACCCTCACTTGGGGCGAATTTCAAATCGACGGAAGATCTGCTAGAGGAGGCCAGCAAACGGCTAATGACGCAGCAGCAGAGGCACTTAATTCCGGCAGCAAAGAAGCTGCCTTACAAATAATCAGGGAGAAACTCCCTGAAAAATTTATTTTTCAATATCATAATTTATGTTCGAATTTAGATAGGATTTTCTCTCCTCCTCCTTCTGTGTATTCTTCTCCTTTTTCTCTTTCTTCCTTCAATAATGTACCTGACATTATCAGCGATTGGGCCGCTGAAAATGTCATGGATTCCGCTGCGCGGCCGGATAGGCCCATAAGTATAGTTATAGAAGGCCCAAGTAGAATAGGAAAAACAGTATGGGCTCGGTCATTAGGTCCTCATAATTATTTGTGTGGACACCTGGACTTGAGTCCAAAAGTGTATAGCAACAGTGCTTGGTATAACGTCATTGATGACGTCAACCCCCAATACCTAAAGCACTTTAAAGAATTTATGGGGGCCCAGAAGGACTGGCAAAGCAACTGTAAATACGGAAAGCCAGTTCAAATTAAAGGTGGAATTCCCACTATCTTTCTCTGCAATCCAGGAGAAGGGTCTTCATTTAAACTCTGGCTGGACAAGCCAGAGCAAGAAGCACTCAAGAACTGGGCTGTAAAGAACGCAATTTTCTGTGATGTCGACAGCCCCTTCTGGATACAAGAGGAAGTGTCCACTTCAGGAGCCAATACACGCAGCAGCCAAGAAGAAGCAGAGGAAGACTCCTGA
Protein Sequence MAPPKRFKIQAKNYFLTYPHCSLSKEEVLAQLQKFQTPVNKKYIHIARELHEDGQPHIHVLLQFEGKFVCTNQRLFDLVSPTRSAHFHPNIQGAKSSSDVKSYVDKDGDTLTWGEFQIDGRSARGGQQTANDAAAEALNSGSKEAALQIIREKLPEKFIFQYHNLCSNLDRIFSPPPSVYSSPFSLSSFNNVPDIISDWAAENVMDSAARPDRPISIVIEGPSRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDWQSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQEALKNWAVKNAIFCDVDSPFWIQEEVSTSGANTRSSQEEAEEDS

References More References in PubMed

1

Targeting of SPCSV-RNase3 via CRISPR-Cas13 confers resistance against sweet potato virus disease.

Yu Y, et al.  Mol Plant Pathol. 2022 Jan;23(1):104-117. doi: 10.1111/mpp.13146. Epub 2021 Oct 11.

PMID: 34633749
2

New isolate of sweet potato virus 2 from Ipomoea nil: molecular characterization, codon usage bias, and phylogenetic analysis based on complete genome.

Wei KJ, et al.  Virol J. 2024 Sep 19;21(1):222. doi: 10.1186/s12985-024-02500-0.

PMID: 39300471
3

Development of a dual RT-RPA detection for Sweet potato feathery mottle virus and Sweet potato chlorotic stuntvirus.

Tang W, et al.  Mol Cell Probes. 2022 Oct;65:101846. doi: 10.1016/j.mcp.2022.101846. Epub 2022 Jul 15.

PMID: 35840109
4

Transcriptome analysis provides insights into the responses of sweet potato to sweet potato virus disease (SPVD).

Bednarek R, et al.  Virus Res. 2021 Apr 2;295:198293. doi: 10.1016/j.virusres.2020.198293. Epub 2021 Jan 4.

PMID: 33412165
5

Development of transgenic sweet potato with multiple virus resistance in South Africa (SA).

Sivparsad BJ, et al.  Transgenic Res. 2014 Apr;23(2):377-88. doi: 10.1007/s11248-013-9759-7. Epub 2013 Oct 25.

PMID: 24158330
6

P1 of Sweet Potato Feathery Mottle Virus Shows Strong Adaptation Capacity, Replacing P1-HCPro in a Chimeric Plum Pox Virus.

Rodamilans B, et al.  J Virol. 2021 Jun 24;95(14):e0015021. doi: 10.1128/JVI.00150-21. Epub 2021 Jun 24.

PMID: 33952634
7

Whitefly transmission of sweet potato viruses.

Valverde RA, et al.  Virus Res. 2004 Mar;100(1):123-8. doi: 10.1016/j.virusres.2003.12.020.

PMID: 15036843
8

Early-Stage Phenotyping of Sweet Potato Virus Disease Caused by Sweet Potato Chlorotic Stunt Virus and Sweet Potato Virus C to Support Breeding.

David M, et al.  Plant Dis. 2023 Jul;107(7):2061-2069. doi: 10.1094/PDIS-08-21-1650-RE. Epub 2023 Jul 6.

PMID: 36510429
9

Detection of sweet potato virus C, sweet potato virus 2 and sweet potato feathery mottle virus in Portugal.

Varanda CM, et al.  Acta Virol. 2015 Jun;59(2):185-8. doi: 10.4149/av_2015_02_185.

PMID: 26104336
10

Detection of Sweet potato virus 2 in Sweet Potato in New Zealand.

Perez-Egusquiza Z, et al.  Plant Dis. 2009 Apr;93(4):427. doi: 10.1094/PDIS-93-4-0427B.

PMID: 30764237