Sweet potato mosaic virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_001967215.1 |
| Isolate |
South Africa |
| Release date |
2017/1/20 |
| Submitter |
Nhlapo,T.F., Rees,J.D.G., Mulabisana,J., Rey,C.M.E.C., Odeny,D.A., Esterhuizen,L. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGTGCCCGCGCCGCACTTTAATTGTGGGCCCCACTCGTTACTTTAATCATTTAAAGCAATTCCCTGTTGCAGACTTGGTCGCCAAGTATGGATTTGTGGGACCCTTTGCAGAATCCACTCCCGGAGACTTTATACGGTCTCCGGTGTATGCTTTCTGTTAAATACTTGCAGAGTATTTCGAAGAAATACGAGCCAGGAACCCTAGGGTTCGAGTTGTGCTCCGATTTAATCCGCATTCTGCGGGTTCGTCAGTATGACAGGGCGAATGCGCGTTACGCGGAGATTTCATCCGTATGGGGGGACTCCGGCAAGACGGAGGCTGAACTTCGAGACCGCTATCGTGCCTTACACTGGGAATGCTGTCCCAATTGCTGCCCGAAGCTATGTCCCGATTTCAAGAAGCGTTCAGATGAAGAGAAAGAAGGGGGATCGAATCCCTAAGGGATGTGTGGGTCCTTGTAAGGTCCAGGATTACGAGTTTAAGATGGATGTCCCACATAGTGGGACCTTTGTGTGTGTGTCTGATTTTACTAGAGGTACTGGGCTTACTCATCGTCTGGGTAAGCGTGTGTGTATTAAGTCCATGGGTATTGACGGTAAGGTCTGGATGGATGACAACGTCGCTAAGAGGGATCACACTAACATAATTACTTACTGGTTGATCCGAGATAGAAGGCCCAATAAGGACCCCTTGACTTTTGTACAGGTGTTCACCATGTATGATAATGAGCCCACCACTGCTAAGATCCGAATGGATCTGAGAGATAGAATGCAGGTTTTGAAGAAGTTTTCTGTGAATGTATCTGGTGGGCCTTACAACCACAAGGAGCAGGCTCTGGTTAGGAAGTTTTTTAAGGGATTGTATAATCATGTTACTTACAACCACAAGGAAGAAGCTAAGTACGAGAACCATTTGGAAAATGCTTTGATGTTGTATTCTGCTAGCAGTCATGCTAGCAATCCTGTATACCAGACCCTGCGTTGCAGGGCTTATTTTTATGATTCGCACAATAATTAATAAAGAAGTAGTTTTATATCATCTTTGCAATCTATTACATCAACTTCTTCTACCCATAAACATGATGATGGGAGATTTCTAATTACATAAACTAAATTTAACAATGAAAAATAACCTAAACTAACTAAGCTATTACATATGCGCCATTTAAGGCGTGTTAAAATACCAGTCCAACTGTGAATAACACCAGTCAGACGCGTTGTTATGATTCGGAACTGGAGGAAGATCTTCTGGAATCCAATTTCCCTCCTGTTCCTGTGGTTGACTTGAAGCTGAAACTTCATGATCTTCCTTGTGTTTAGGTTGTTTGAATGGACATACATCAACCGTAGATGGAATGGGGCAGTCTGACCCGCAGACATGGGGTTGTTGAAGAATTCTGCAGCTCTCGTAATCTGTGCATGACTTAGTGACTCCCCTGTGCGTAAATCCATGCTGGAACTTGCAGTCGTTGGTGATGAAGGCTGAGCAGCCGCAGCCCTTCCACACTATTCTTGTCCTAGGCTCAGGAGTCTTCCTCTGCTTCTTCTTGGCTGCTGCGTGTATTGGCTCCTGAAGTGGACACTTCCTCTTGTATCCAGAAGGGGCTGTCGACATCACAGAAAATTGCGTTCTTTACAGCCCAGTTCTTGAGTGCTTCTTGCTCTGGCTTGTCCAGCCAGAGTTTAAATGAAGACCCTTCTCCTGGATTGCAGAGAAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTACAGTTGCTTTGCCAGTCCTTCTGGGCCCCCATAAATTCTTTAAAGTGCTTTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTATACACTTTTGGACTCAAGTCCAGGTGTCCACACAAATAATTATGAGGACCTAATGACCGAGCCCATACTGTTTTTCCTATTCTACTTGGGCCTTCTATAACTATACTTATGGGCCTATCCGGCCGCGCAGCGGAATCCATGACATTTTCAGCGGCCCAATCGCTGATAATGTCAGGTACATTATTGAAGGAAGAAAGAGAAAAAGGAGAAGAATACACAGAAGGAGGAGGAGAGAAAATCCTATCTAAATTCGAACATAAATTATGATATTGAAAAATAAATTTTTCAGGGAGTTTCTCCCTGATTATTTGTAAGGCAGCTTCTTTGCTGCCGGAATTAAGTGCCTCTGCTGCTGCGTCATTAGCCGTTTGCTGGCCTCCTCTAGCAGATCTTCCGTCGATTTGAAATTCGCCCCAAGTGAGGGTATCTCCATCCTTATCGACGTAGGACTTGACATCGGAGCTGGATTTAGCTCCCTGTATGTTTGGATGGAAATGTGCTGACCTGGTTGGAGAGACCAGGTCGAATAGGCGTTGGTTCGTGCAGACGAACTTGCCTTCGAACTGGAGAAGCACGTGGATATGAGGCTGCCCATCTTCGTGCAGTTCTCTAGCTATGTGAATATATTTTTTATTCACAGGTGTTTGAAATTTTTGGAGTTGGGCGAGAACTTCTTCTTTAGAGAGAGAGCAATGCGGATAAGTAAGGAAGTAATTTTTAGCTTGTATTTTAAATCGTTTAGGAGGAGCCATTGACTTAGTCAATTGGAGACACCCAAACTTGCTGAATGAATTGGATATCGGAGTACAATATATACCCTGTCTCCAAATGGCATTATGGTAATTTTAACAACTTTAATTTGAATTCTGAAATCTCATTGGTCCGCCATAAAGCGGGCACCGTATTAATATT
Gene Information
|
NCBI Accession
|
YP_009337999.1
|
|
Location
|
91-444 |
|
Protein Name
|
V2 |
|
Coding Region
|
ATGGATTTGTGGGACCCTTTGCAGAATCCACTCCCGGAGACTTTATACGGTCTCCGGTGTATGCTTTCTGTTAAATACTTGCAGAGTATTTCGAAGAAATACGAGCCAGGAACCCTAGGGTTCGAGTTGTGCTCCGATTTAATCCGCATTCTGCGGGTTCGTCAGTATGACAGGGCGAATGCGCGTTACGCGGAGATTTCATCCGTATGGGGGGACTCCGGCAAGACGGAGGCTGAACTTCGAGACCGCTATCGTGCCTTACACTGGGAATGCTGTCCCAATTGCTGCCCGAAGCTATGTCCCGATTTCAAGAAGCGTTCAGATGAAGAGAAAGAAGGGGGATCGAATCCCTAA |
|
Protein Sequence
|
MDLWDPLQNPLPETLYGLRCMLSVKYLQSISKKYEPGTLGFELCSDLIRILRVRQYDRANARYAEISSVWGDSGKTEAELRDRYRALHWECCPNCCPKLCPDFKKRSDEEKEGGSNP |
|
NCBI Accession
|
YP_009338000.1
|
|
Location
|
257-1021 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGACAGGGCGAATGCGCGTTACGCGGAGATTTCATCCGTATGGGGGGACTCCGGCAAGACGGAGGCTGAACTTCGAGACCGCTATCGTGCCTTACACTGGGAATGCTGTCCCAATTGCTGCCCGAAGCTATGTCCCGATTTCAAGAAGCGTTCAGATGAAGAGAAAGAAGGGGGATCGAATCCCTAAGGGATGTGTGGGTCCTTGTAAGGTCCAGGATTACGAGTTTAAGATGGATGTCCCACATAGTGGGACCTTTGTGTGTGTGTCTGATTTTACTAGAGGTACTGGGCTTACTCATCGTCTGGGTAAGCGTGTGTGTATTAAGTCCATGGGTATTGACGGTAAGGTCTGGATGGATGACAACGTCGCTAAGAGGGATCACACTAACATAATTACTTACTGGTTGATCCGAGATAGAAGGCCCAATAAGGACCCCTTGACTTTTGTACAGGTGTTCACCATGTATGATAATGAGCCCACCACTGCTAAGATCCGAATGGATCTGAGAGATAGAATGCAGGTTTTGAAGAAGTTTTCTGTGAATGTATCTGGTGGGCCTTACAACCACAAGGAGCAGGCTCTGGTTAGGAAGTTTTTTAAGGGATTGTATAATCATGTTACTTACAACCACAAGGAAGAAGCTAAGTACGAGAACCATTTGGAAAATGCTTTGATGTTGTATTCTGCTAGCAGTCATGCTAGCAATCCTGTATACCAGACCCTGCGTTGCAGGGCTTATTTTTATGATTCGCACAATAATTAA |
|
Protein Sequence
|
MTGRMRVTRRFHPYGGTPARRRLNFETAIVPYTGNAVPIAARSYVPISRSVQMKRKKGDRIPKGCVGPCKVQDYEFKMDVPHSGTFVCVSDFTRGTGLTHRLGKRVCIKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLTFVQVFTMYDNEPTTAKIRMDLRDRMQVLKKFSVNVSGGPYNHKEQALVRKFFKGLYNHVTYNHKEEAKYENHLENALMLYSASSHASNPVYQTLRCRAYFYDSHNN |
|
NCBI Accession
|
YP_009338001.1
|
|
Location
|
1018-1455 |
|
Protein Name
|
replication enhancer protein |
|
Coding Region
|
ATGGATTTACGCACAGGGGAGTCACTAAGTCATGCACAGATTACGAGAGCTGCAGAATTCTTCAACAACCCCATGTCTGCGGGTCAGACTGCCCCATTCCATCTACGGTTGATGTATGTCCATTCAAACAACCTAAACACAAGGAAGATCATGAAGTTTCAGCTTCAAGTCAACCACAGGAACAGGAGGGAAATTGGATTCCAGAAGATCTTCCTCCAGTTCCGAATCATAACAACGCGTCTGACTGGTGTTATTCACAGTTGGACTGGTATTTTAACACGCCTTAAATGGCGCATATGTAATAGCTTAGTTAGTTTAGGTTATTTTTCATTGTTAAATTTAGTTTATGTAATTAGAAATCTCCCATCATCATGTTTATGGGTAGAAGAAGTTGATGTAATAGATTGCAAAGATGATATAAAACTACTTCTTTATTAA |
|
Protein Sequence
|
MDLRTGESLSHAQITRAAEFFNNPMSAGQTAPFHLRLMYVHSNNLNTRKIMKFQLQVNHRNRREIGFQKIFLQFRIITTRLTGVIHSWTGILTRLKWRICNSLVSLGYFSLLNLVYVIRNLPSSCLWVEEVDVIDCKDDIKLLLY |
|
NCBI Accession
|
YP_009338002.1
|
|
Location
|
1169-1618 |
|
Protein Name
|
trans-activating protein |
|
Coding Region
|
ATGTCGACAGCCCCTTCTGGATACAAGAGGAAGTGTCCACTTCAGGAGCCAATACACGCAGCAGCCAAGAAGAAGCAGAGGAAGACTCCTGAGCCTAGGACAAGAATAGTGTGGAAGGGCTGCGGCTGCTCAGCCTTCATCACCAACGACTGCAAGTTCCAGCATGGATTTACGCACAGGGGAGTCACTAAGTCATGCACAGATTACGAGAGCTGCAGAATTCTTCAACAACCCCATGTCTGCGGGTCAGACTGCCCCATTCCATCTACGGTTGATGTATGTCCATTCAAACAACCTAAACACAAGGAAGATCATGAAGTTTCAGCTTCAAGTCAACCACAGGAACAGGAGGGAAATTGGATTCCAGAAGATCTTCCTCCAGTTCCGAATCATAACAACGCGTCTGACTGGTGTTATTCACAGTTGGACTGGTATTTTAACACGCCTTAA |
|
Protein Sequence
|
MSTAPSGYKRKCPLQEPIHAAAKKKQRKTPEPRTRIVWKGCGCSAFITNDCKFQHGFTHRGVTKSCTDYESCRILQQPHVCGSDCPIPSTVDVCPFKQPKHKEDHEVSASSQPQEQEGNWIPEDLPPVPNHNNASDWCYSQLDWYFNTP |
|
NCBI Accession
|
YP_009338003.1
|
|
Location
|
1527-2621 |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGGCTCCTCCTAAACGATTTAAAATACAAGCTAAAAATTACTTCCTTACTTATCCGCATTGCTCTCTCTCTAAAGAAGAAGTTCTCGCCCAACTCCAAAAATTTCAAACACCTGTGAATAAAAAATATATTCACATAGCTAGAGAACTGCACGAAGATGGGCAGCCTCATATCCACGTGCTTCTCCAGTTCGAAGGCAAGTTCGTCTGCACGAACCAACGCCTATTCGACCTGGTCTCTCCAACCAGGTCAGCACATTTCCATCCAAACATACAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTACGTCGATAAGGATGGAGATACCCTCACTTGGGGCGAATTTCAAATCGACGGAAGATCTGCTAGAGGAGGCCAGCAAACGGCTAATGACGCAGCAGCAGAGGCACTTAATTCCGGCAGCAAAGAAGCTGCCTTACAAATAATCAGGGAGAAACTCCCTGAAAAATTTATTTTTCAATATCATAATTTATGTTCGAATTTAGATAGGATTTTCTCTCCTCCTCCTTCTGTGTATTCTTCTCCTTTTTCTCTTTCTTCCTTCAATAATGTACCTGACATTATCAGCGATTGGGCCGCTGAAAATGTCATGGATTCCGCTGCGCGGCCGGATAGGCCCATAAGTATAGTTATAGAAGGCCCAAGTAGAATAGGAAAAACAGTATGGGCTCGGTCATTAGGTCCTCATAATTATTTGTGTGGACACCTGGACTTGAGTCCAAAAGTGTATAGCAACAGTGCTTGGTATAACGTCATTGATGACGTCAACCCCCAATACCTAAAGCACTTTAAAGAATTTATGGGGGCCCAGAAGGACTGGCAAAGCAACTGTAAATACGGAAAGCCAGTTCAAATTAAAGGTGGAATTCCCACTATCTTTCTCTGCAATCCAGGAGAAGGGTCTTCATTTAAACTCTGGCTGGACAAGCCAGAGCAAGAAGCACTCAAGAACTGGGCTGTAAAGAACGCAATTTTCTGTGATGTCGACAGCCCCTTCTGGATACAAGAGGAAGTGTCCACTTCAGGAGCCAATACACGCAGCAGCCAAGAAGAAGCAGAGGAAGACTCCTGA |
|
Protein Sequence
|
MAPPKRFKIQAKNYFLTYPHCSLSKEEVLAQLQKFQTPVNKKYIHIARELHEDGQPHIHVLLQFEGKFVCTNQRLFDLVSPTRSAHFHPNIQGAKSSSDVKSYVDKDGDTLTWGEFQIDGRSARGGQQTANDAAAEALNSGSKEAALQIIREKLPEKFIFQYHNLCSNLDRIFSPPPSVYSSPFSLSSFNNVPDIISDWAAENVMDSAARPDRPISIVIEGPSRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDWQSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQEALKNWAVKNAIFCDVDSPFWIQEEVSTSGANTRSSQEEAEEDS |