Sweet potato mosaic virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_001967215.1 |
| Isolate | South Africa |
| Release date | 2017/1/20 |
| Submitter | Nhlapo,T.F., Rees,J.D.G., Mulabisana,J., Rey,C.M.E.C., Odeny,D.A., Esterhuizen,L. |
| Host | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_033334
Gene Information
| NCBI Accession | YP_009337999.1 |
|---|---|
| Location | 91-444 |
| Protein Name | V2 |
| Coding Region | ATGGATTTGTGGGACCCTTTGCAGAATCCACTCCCGGAGACTTTATACGGTCTCCGGTGTATGCTTTCTGTTAAATACTTGCAGAGTATTTCGAAGAAATACGAGCCAGGAACCCTAGGGTTCGAGTTGTGCTCCGATTTAATCCGCATTCTGCGGGTTCGTCAGTATGACAGGGCGAATGCGCGTTACGCGGAGATTTCATCCGTATGGGGGGACTCCGGCAAGACGGAGGCTGAACTTCGAGACCGCTATCGTGCCTTACACTGGGAATGCTGTCCCAATTGCTGCCCGAAGCTATGTCCCGATTTCAAGAAGCGTTCAGATGAAGAGAAAGAAGGGGGATCGAATCCCTAA |
| Protein Sequence | MDLWDPLQNPLPETLYGLRCMLSVKYLQSISKKYEPGTLGFELCSDLIRILRVRQYDRANARYAEISSVWGDSGKTEAELRDRYRALHWECCPNCCPKLCPDFKKRSDEEKEGGSNP |
| NCBI Accession | YP_009338000.1 |
|---|---|
| Location | 257-1021 |
| Protein Name | coat protein |
| Coding Region | ATGACAGGGCGAATGCGCGTTACGCGGAGATTTCATCCGTATGGGGGGACTCCGGCAAGACGGAGGCTGAACTTCGAGACCGCTATCGTGCCTTACACTGGGAATGCTGTCCCAATTGCTGCCCGAAGCTATGTCCCGATTTCAAGAAGCGTTCAGATGAAGAGAAAGAAGGGGGATCGAATCCCTAAGGGATGTGTGGGTCCTTGTAAGGTCCAGGATTACGAGTTTAAGATGGATGTCCCACATAGTGGGACCTTTGTGTGTGTGTCTGATTTTACTAGAGGTACTGGGCTTACTCATCGTCTGGGTAAGCGTGTGTGTATTAAGTCCATGGGTATTGACGGTAAGGTCTGGATGGATGACAACGTCGCTAAGAGGGATCACACTAACATAATTACTTACTGGTTGATCCGAGATAGAAGGCCCAATAAGGACCCCTTGACTTTTGTACAGGTGTTCACCATGTATGATAATGAGCCCACCACTGCTAAGATCCGAATGGATCTGAGAGATAGAATGCAGGTTTTGAAGAAGTTTTCTGTGAATGTATCTGGTGGGCCTTACAACCACAAGGAGCAGGCTCTGGTTAGGAAGTTTTTTAAGGGATTGTATAATCATGTTACTTACAACCACAAGGAAGAAGCTAAGTACGAGAACCATTTGGAAAATGCTTTGATGTTGTATTCTGCTAGCAGTCATGCTAGCAATCCTGTATACCAGACCCTGCGTTGCAGGGCTTATTTTTATGATTCGCACAATAATTAA |
| Protein Sequence | MTGRMRVTRRFHPYGGTPARRRLNFETAIVPYTGNAVPIAARSYVPISRSVQMKRKKGDRIPKGCVGPCKVQDYEFKMDVPHSGTFVCVSDFTRGTGLTHRLGKRVCIKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLTFVQVFTMYDNEPTTAKIRMDLRDRMQVLKKFSVNVSGGPYNHKEQALVRKFFKGLYNHVTYNHKEEAKYENHLENALMLYSASSHASNPVYQTLRCRAYFYDSHNN |
| NCBI Accession | YP_009338001.1 |
|---|---|
| Location | 1018-1455 |
| Protein Name | replication enhancer protein |
| Coding Region | ATGGATTTACGCACAGGGGAGTCACTAAGTCATGCACAGATTACGAGAGCTGCAGAATTCTTCAACAACCCCATGTCTGCGGGTCAGACTGCCCCATTCCATCTACGGTTGATGTATGTCCATTCAAACAACCTAAACACAAGGAAGATCATGAAGTTTCAGCTTCAAGTCAACCACAGGAACAGGAGGGAAATTGGATTCCAGAAGATCTTCCTCCAGTTCCGAATCATAACAACGCGTCTGACTGGTGTTATTCACAGTTGGACTGGTATTTTAACACGCCTTAAATGGCGCATATGTAATAGCTTAGTTAGTTTAGGTTATTTTTCATTGTTAAATTTAGTTTATGTAATTAGAAATCTCCCATCATCATGTTTATGGGTAGAAGAAGTTGATGTAATAGATTGCAAAGATGATATAAAACTACTTCTTTATTAA |
| Protein Sequence | MDLRTGESLSHAQITRAAEFFNNPMSAGQTAPFHLRLMYVHSNNLNTRKIMKFQLQVNHRNRREIGFQKIFLQFRIITTRLTGVIHSWTGILTRLKWRICNSLVSLGYFSLLNLVYVIRNLPSSCLWVEEVDVIDCKDDIKLLLY |
| NCBI Accession | YP_009338002.1 |
|---|---|
| Location | 1169-1618 |
| Protein Name | trans-activating protein |
| Coding Region | ATGTCGACAGCCCCTTCTGGATACAAGAGGAAGTGTCCACTTCAGGAGCCAATACACGCAGCAGCCAAGAAGAAGCAGAGGAAGACTCCTGAGCCTAGGACAAGAATAGTGTGGAAGGGCTGCGGCTGCTCAGCCTTCATCACCAACGACTGCAAGTTCCAGCATGGATTTACGCACAGGGGAGTCACTAAGTCATGCACAGATTACGAGAGCTGCAGAATTCTTCAACAACCCCATGTCTGCGGGTCAGACTGCCCCATTCCATCTACGGTTGATGTATGTCCATTCAAACAACCTAAACACAAGGAAGATCATGAAGTTTCAGCTTCAAGTCAACCACAGGAACAGGAGGGAAATTGGATTCCAGAAGATCTTCCTCCAGTTCCGAATCATAACAACGCGTCTGACTGGTGTTATTCACAGTTGGACTGGTATTTTAACACGCCTTAA |
| Protein Sequence | MSTAPSGYKRKCPLQEPIHAAAKKKQRKTPEPRTRIVWKGCGCSAFITNDCKFQHGFTHRGVTKSCTDYESCRILQQPHVCGSDCPIPSTVDVCPFKQPKHKEDHEVSASSQPQEQEGNWIPEDLPPVPNHNNASDWCYSQLDWYFNTP |
| NCBI Accession | YP_009338003.1 |
|---|---|
| Location | 1527-2621 |
| Protein Name | replication-associated protein |
| Coding Region | ATGGCTCCTCCTAAACGATTTAAAATACAAGCTAAAAATTACTTCCTTACTTATCCGCATTGCTCTCTCTCTAAAGAAGAAGTTCTCGCCCAACTCCAAAAATTTCAAACACCTGTGAATAAAAAATATATTCACATAGCTAGAGAACTGCACGAAGATGGGCAGCCTCATATCCACGTGCTTCTCCAGTTCGAAGGCAAGTTCGTCTGCACGAACCAACGCCTATTCGACCTGGTCTCTCCAACCAGGTCAGCACATTTCCATCCAAACATACAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTACGTCGATAAGGATGGAGATACCCTCACTTGGGGCGAATTTCAAATCGACGGAAGATCTGCTAGAGGAGGCCAGCAAACGGCTAATGACGCAGCAGCAGAGGCACTTAATTCCGGCAGCAAAGAAGCTGCCTTACAAATAATCAGGGAGAAACTCCCTGAAAAATTTATTTTTCAATATCATAATTTATGTTCGAATTTAGATAGGATTTTCTCTCCTCCTCCTTCTGTGTATTCTTCTCCTTTTTCTCTTTCTTCCTTCAATAATGTACCTGACATTATCAGCGATTGGGCCGCTGAAAATGTCATGGATTCCGCTGCGCGGCCGGATAGGCCCATAAGTATAGTTATAGAAGGCCCAAGTAGAATAGGAAAAACAGTATGGGCTCGGTCATTAGGTCCTCATAATTATTTGTGTGGACACCTGGACTTGAGTCCAAAAGTGTATAGCAACAGTGCTTGGTATAACGTCATTGATGACGTCAACCCCCAATACCTAAAGCACTTTAAAGAATTTATGGGGGCCCAGAAGGACTGGCAAAGCAACTGTAAATACGGAAAGCCAGTTCAAATTAAAGGTGGAATTCCCACTATCTTTCTCTGCAATCCAGGAGAAGGGTCTTCATTTAAACTCTGGCTGGACAAGCCAGAGCAAGAAGCACTCAAGAACTGGGCTGTAAAGAACGCAATTTTCTGTGATGTCGACAGCCCCTTCTGGATACAAGAGGAAGTGTCCACTTCAGGAGCCAATACACGCAGCAGCCAAGAAGAAGCAGAGGAAGACTCCTGA |
| Protein Sequence | MAPPKRFKIQAKNYFLTYPHCSLSKEEVLAQLQKFQTPVNKKYIHIARELHEDGQPHIHVLLQFEGKFVCTNQRLFDLVSPTRSAHFHPNIQGAKSSSDVKSYVDKDGDTLTWGEFQIDGRSARGGQQTANDAAAEALNSGSKEAALQIIREKLPEKFIFQYHNLCSNLDRIFSPPPSVYSSPFSLSSFNNVPDIISDWAAENVMDSAARPDRPISIVIEGPSRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDWQSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKLWLDKPEQEALKNWAVKNAIFCDVDSPFWIQEEVSTSGANTRSSQEEAEEDS |
References More References in PubMed
| 1 |
Targeting of SPCSV-RNase3 via CRISPR-Cas13 confers resistance against sweet potato virus disease. Yu Y, et al. Mol Plant Pathol. 2022 Jan;23(1):104-117. doi: 10.1111/mpp.13146. Epub 2021 Oct 11. PMID: 34633749 |
|---|---|
| 2 |
Tang W, et al. Mol Cell Probes. 2022 Oct;65:101846. doi: 10.1016/j.mcp.2022.101846. Epub 2022 Jul 15. PMID: 35840109 |
| 3 |
Bednarek R, et al. Virus Res. 2021 Apr 2;295:198293. doi: 10.1016/j.virusres.2020.198293. Epub 2021 Jan 4. PMID: 33412165 |
| 4 |
Rodamilans B, et al. J Virol. 2021 Jun 24;95(14):e0015021. doi: 10.1128/JVI.00150-21. Epub 2021 Jun 24. PMID: 33952634 |
| 5 |
Detection of Sweet potato virus 2 in Sweet Potato in New Zealand. Perez-Egusquiza Z, et al. Plant Dis. 2009 Apr;93(4):427. doi: 10.1094/PDIS-93-4-0427B. PMID: 30764237 |
| 6 |
Development of transgenic sweet potato with multiple virus resistance in South Africa (SA). Sivparsad BJ, et al. Transgenic Res. 2014 Apr;23(2):377-88. doi: 10.1007/s11248-013-9759-7. Epub 2013 Oct 25. PMID: 24158330 |
| 7 |
Sweet potato viromes in eight different geographical regions in Korea and two different cultivars. Jo Y, et al. Sci Rep. 2020 Feb 13;10(1):2588. doi: 10.1038/s41598-020-59518-x. PMID: 32054944 |
| 8 |
Whitefly transmission of sweet potato viruses. Valverde RA, et al. Virus Res. 2004 Mar;100(1):123-8. doi: 10.1016/j.virusres.2003.12.020. PMID: 15036843 |
| 9 |
Global Plant Virus Disease Pandemics and Epidemics. Jones RAC. Plants (Basel). 2021 Jan 25;10(2):233. doi: 10.3390/plants10020233. PMID: 33504044 |
| 10 |
Almeyda CV, et al. Plant Dis. 2013 Nov;97(11):1516. doi: 10.1094/PDIS-04-13-0359-PDN. PMID: 30708498 |