Sweet potato leaf curl virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000864705.1 |
| Isolate |
USA |
| Release date |
2015/2/13 |
| Submitter |
Lotrakul,P., Valverde,R.A., Clark,C.A., Sim,J., De La Torre,R. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
TAATATTACCGGTGCCCGCCGCGCCCTTCAAAAGTGGGCCCCACAAGGGGACCACGCGTCTTTTCCGTACTCTCTTTAATTATGACATTGCTTTATAAGGACCAATCCTGTTTCGCCCTTGGCGCCCAAGTATGGCTGAATTGTGGGACCCTTTGCAGAACCCACTACCAGATACTTTATACGGTTTTAGGTGTATGCTATCCGTAAAATACTTGCAAAGTATTTTGAAGAAATACGAGCCAGGAACCTTAGGGTTCGAGCTCTGTTCGGAGTTAATCCGTATATTCAGAGTCAGGCAGTATGACAGGGCGAATGCGCGTTTCGCCGAGATTTCATCCATATGGGGGGAGACCGGTAAGACGGAGGCTGAACTTCGAGACAGCTATCGTGCCCTACACTGGGAATGCTGTCCCAATTGCTGCCCGAAGCTATGTCCCGGTTTCAAGAGGCGTCCGGATGAAGAGAAGGAGGGGTGACCGCATCCCGAAGGGATGTGTGGGTCCCTGTAAGGTCCAGGACTATGAGTTCAAGATGGACGTTCCCCACACGGGAACGTTTGTCTGTGTCTCGGATTTTACAAGGGGTACTGGGCTTACCCATCGCCTGGGTAAGCGTGTTTGTGTGAAGTCCATGGGTATAGATGGGAAGGTCTGGATGGATGATAATGTGGCCAAGAGAGATCACACCAATATCATCACGTATTGGTTGATTCGTGACAGAAGGCCCAATAAGGATCCGCTGAACTTTGGCCAGATCTTCACCATGTACGACAATGAGCCCACTACTGCTAAGATCCGAATGGATCTGAGGGATAGAATGCAGGTCTTGAAGAAGTTTTCTGTTACAGTTTCAGGAGGTCCATACAGCCACAAGGAGCAGGCATTAATTAGGAAGTTTTTTAAGGGTTTGTATAATCATGTTACTTACAATCACAAGGAAGAAGCTAAGTATGAGAATCAATTAGAGAATGCACTTATGCTGTATAGTGCTAGCAGTCATGCTAGTAATCCTGTGTATCAGACCCTGCGTTGCAGGGCTTATTTCTATGATTCGCATAATAATTAATAAAATTATATTTTATTAATAGAGTAATACCTTTACATCATCATTACAATCTACAGTATCTAATTCATCTATCCAAGAACATACTCTTGGAAGATATCTAATAACAAAAACTAAATTAACTAAACTAAAAAACCCTAAATTTGCTAATTCATTACATATGCGCCATTTAAGGCGTTCCAAAATACCAGTCCAACTGTGAATAGCACCAGTTAGACGGGTCGTCAAGATCCGGAATTGGAGGAAGATCTTGTGGAATCCCAGTTGCCTCCTTTCCCTGTAGTTCACCCTCAGCTGGAATTTGAGGATGGTTCTCCCCTGTGTGCTCTCGTGGACATACATTATTCTGAGATGGAACGGTGCAGTCCGACCCACAGACATGGGGTTGGTGTCGAATTCGACTGCTCTCGTAGTCTGAGCATGACTTATTGATTCCCCTGTGCGTGAATCCATGCTGGTACTTGCAGGTTGTTGTTATGAAGGCTGAACAGCCGCAACCCTTCCACACTATCCTCGTCCTCTGTTCAGGAACTTTCCTCTTGGCCTTCTTCGCCTCTGTGTGCAGTGGCTCCTGAATGGGACACTTCCTCTTGTACCCAGAAAGGGGATTGGACATCGCAGAATATAGCGTTTGCTGTTGCCCAATTCTTGAGTGCTCCTTGCTCTGGTTTGTCCAACCAGAGTTTAAATGAGGATCCCTCTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTCGAACTGGCTTTCCGTATTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTATACTTTTGGGCTTAGATCTAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCCCATACTGTTTTGCCTATTCTGCTTGGGCCTTCAATAACAATGGAAATGGGTCTATCCGGCCGCGCAGCGGAATCCATGACATTTTCAGCGGCCCAGTCGCTGATAATGTCAGGAACGGCATTGAAAGAAGAAGACGAAAAAGGGGAAGAATATACAGAAGGTGGAGGAGAAAAAATCCTATCTAAATTACTAACTAAATTATGAAATTGAAATAAATATTTTTCAGGGAGTTTCTCCCTGATTATTTGCAACGCAGCTTCTTTAGAACCTGCGTTTAGAGCCTCTGCGGCTGCGTCGTTAGCAGTCTGCTGGCCTCCTCTAGCAGATCTGCCGTCGACCTGGAATTCACCCCAGGTGATGGTATCCCCGTCCTTATCGACGTAGGACTTGACATCGGAGCTGGATTTAGCTCCCTGGATGTTGGGGTGAAAGTGATTCGATCTGTTCGGTGAGACCAGATCGAAGAATCTGCTATTTGTGCAGACGAATTTGCCTTCGAACTGCACCAACACATGGAGGTGAGGTTCCCCATCCTCGTGCAGTTCTCTTGCTACGTGTATATATTTTTTGTTGCTGGGTGTTTGTATATTTAGGAGTTGGGCTAGGCAGTCCTCTTTTGAGAGAGAACAGCGTGGATAAGTAATAAAATAATTTTTGGCCTGAATTTTAAAACGTTTTGGAGGAGCCATTTGGAGACACGCATAAGTTCAAATGAATTGGAGACTGGAGACAATATATAGTATGTCTCCAAATGGCATTCTGGTAATTTAGAAGATCCTTTTAACTTTAATTCAAATTCCGACAACTCTGGGTCCACCAAAAGGCGGGCACCGTAT
Gene Information
|
NCBI Accession
|
NP_808840.1
|
|
Location
|
132-476 |
|
Gene Name
|
AV2 |
|
Protein Name
|
precoat protein AV2 |
|
Coding Region
|
ATGGCTGAATTGTGGGACCCTTTGCAGAACCCACTACCAGATACTTTATACGGTTTTAGGTGTATGCTATCCGTAAAATACTTGCAAAGTATTTTGAAGAAATACGAGCCAGGAACCTTAGGGTTCGAGCTCTGTTCGGAGTTAATCCGTATATTCAGAGTCAGGCAGTATGACAGGGCGAATGCGCGTTTCGCCGAGATTTCATCCATATGGGGGGAGACCGGTAAGACGGAGGCTGAACTTCGAGACAGCTATCGTGCCCTACACTGGGAATGCTGTCCCAATTGCTGCCCGAAGCTATGTCCCGGTTTCAAGAGGCGTCCGGATGAAGAGAAGGAGGGGTGA |
|
Protein Sequence
|
MAELWDPLQNPLPDTLYGFRCMLSVKYLQSILKKYEPGTLGFELCSELIRIFRVRQYDRANARFAEISSIWGETGKTEAELRDSYRALHWECCPNCCPKLCPGFKRRPDEEKEG |
|
NCBI Accession
|
NP_808841.1
|
|
Location
|
301-1065 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein AV1 |
|
Coding Region
|
ATGACAGGGCGAATGCGCGTTTCGCCGAGATTTCATCCATATGGGGGGAGACCGGTAAGACGGAGGCTGAACTTCGAGACAGCTATCGTGCCCTACACTGGGAATGCTGTCCCAATTGCTGCCCGAAGCTATGTCCCGGTTTCAAGAGGCGTCCGGATGAAGAGAAGGAGGGGTGACCGCATCCCGAAGGGATGTGTGGGTCCCTGTAAGGTCCAGGACTATGAGTTCAAGATGGACGTTCCCCACACGGGAACGTTTGTCTGTGTCTCGGATTTTACAAGGGGTACTGGGCTTACCCATCGCCTGGGTAAGCGTGTTTGTGTGAAGTCCATGGGTATAGATGGGAAGGTCTGGATGGATGATAATGTGGCCAAGAGAGATCACACCAATATCATCACGTATTGGTTGATTCGTGACAGAAGGCCCAATAAGGATCCGCTGAACTTTGGCCAGATCTTCACCATGTACGACAATGAGCCCACTACTGCTAAGATCCGAATGGATCTGAGGGATAGAATGCAGGTCTTGAAGAAGTTTTCTGTTACAGTTTCAGGAGGTCCATACAGCCACAAGGAGCAGGCATTAATTAGGAAGTTTTTTAAGGGTTTGTATAATCATGTTACTTACAATCACAAGGAAGAAGCTAAGTATGAGAATCAATTAGAGAATGCACTTATGCTGTATAGTGCTAGCAGTCATGCTAGTAATCCTGTGTATCAGACCCTGCGTTGCAGGGCTTATTTCTATGATTCGCATAATAATTAA |
|
Protein Sequence
|
MTGRMRVSPRFHPYGGRPVRRRLNFETAIVPYTGNAVPIAARSYVPVSRGVRMKRRRGDRIPKGCVGPCKVQDYEFKMDVPHTGTFVCVSDFTRGTGLTHRLGKRVCVKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLNFGQIFTMYDNEPTTAKIRMDLRDRMQVLKKFSVTVSGGPYSHKEQALIRKFFKGLYNHVTYNHKEEAKYENQLENALMLYSASSHASNPVYQTLRCRAYFYDSHNN |
|
NCBI Accession
|
NP_808842.1
|
|
Location
|
1081-1515 |
|
Gene Name
|
AC3 |
|
Protein Name
|
AC3 |
|
Coding Region
|
ATGGATTCACGCACAGGGGAATCAATAAGTCATGCTCAGACTACGAGAGCAGTCGAATTCGACACCAACCCCATGTCTGTGGGTCGGACTGCACCGTTCCATCTCAGAATAATGTATGTCCACGAGAGCACACAGGGGAGAACCATCCTCAAATTCCAGCTGAGGGTGAACTACAGGGAAAGGAGGCAACTGGGATTCCACAAGATCTTCCTCCAATTCCGGATCTTGACGACCCGTCTAACTGGTGCTATTCACAGTTGGACTGGTATTTTGGAACGCCTTAAATGGCGCATATGTAATGAATTAGCAAATTTAGGGTTTTTTAGTTTAGTTAATTTAGTTTTTGTTATTAGATATCTTCCAAGAGTATGTTCTTGGATAGATGAATTAGATACTGTAGATTGTAATGATGATGTAAAGGTATTACTCTATTAA |
|
Protein Sequence
|
MDSRTGESISHAQTTRAVEFDTNPMSVGRTAPFHLRIMYVHESTQGRTILKFQLRVNYRERRQLGFHKIFLQFRILTTRLTGAIHSWTGILERLKWRICNELANLGFFSLVNLVFVIRYLPRVCSWIDELDTVDCNDDVKVLLY |
|
NCBI Accession
|
NP_808843.1
|
|
Location
|
1232-1678 |
|
Gene Name
|
AC2 |
|
Protein Name
|
transactivator protein AC2 |
|
Coding Region
|
ATGTCCAATCCCCTTTCTGGGTACAAGAGGAAGTGTCCCATTCAGGAGCCACTGCACACAGAGGCGAAGAAGGCCAAGAGGAAAGTTCCTGAACAGAGGACGAGGATAGTGTGGAAGGGTTGCGGCTGTTCAGCCTTCATAACAACAACCTGCAAGTACCAGCATGGATTCACGCACAGGGGAATCAATAAGTCATGCTCAGACTACGAGAGCAGTCGAATTCGACACCAACCCCATGTCTGTGGGTCGGACTGCACCGTTCCATCTCAGAATAATGTATGTCCACGAGAGCACACAGGGGAGAACCATCCTCAAATTCCAGCTGAGGGTGAACTACAGGGAAAGGAGGCAACTGGGATTCCACAAGATCTTCCTCCAATTCCGGATCTTGACGACCCGTCTAACTGGTGCTATTCACAGTTGGACTGGTATTTTGGAACGCCTTAA |
|
Protein Sequence
|
MSNPLSGYKRKCPIQEPLHTEAKKAKRKVPEQRTRIVWKGCGCSAFITTTCKYQHGFTHRGINKSCSDYESSRIRHQPHVCGSDCTVPSQNNVCPREHTGENHPQIPAEGELQGKEATGIPQDLPPIPDLDDPSNWCYSQLDWYFGTP |
|
NCBI Accession
|
NP_808844.1
|
|
Location
|
1587-2681 |
|
Gene Name
|
AC1 |
|
Protein Name
|
replication initiation protein AC1 |
|
Coding Region
|
ATGGCTCCTCCAAAACGTTTTAAAATTCAGGCCAAAAATTATTTTATTACTTATCCACGCTGTTCTCTCTCAAAAGAGGACTGCCTAGCCCAACTCCTAAATATACAAACACCCAGCAACAAAAAATATATACACGTAGCAAGAGAACTGCACGAGGATGGGGAACCTCACCTCCATGTGTTGGTGCAGTTCGAAGGCAAATTCGTCTGCACAAATAGCAGATTCTTCGATCTGGTCTCACCGAACAGATCGAATCACTTTCACCCCAACATCCAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTACGTCGATAAGGACGGGGATACCATCACCTGGGGTGAATTCCAGGTCGACGGCAGATCTGCTAGAGGAGGCCAGCAGACTGCTAACGACGCAGCCGCAGAGGCTCTAAACGCAGGTTCTAAAGAAGCTGCGTTGCAAATAATCAGGGAGAAACTCCCTGAAAAATATTTATTTCAATTTCATAATTTAGTTAGTAATTTAGATAGGATTTTTTCTCCTCCACCTTCTGTATATTCTTCCCCTTTTTCGTCTTCTTCTTTCAATGCCGTTCCTGACATTATCAGCGACTGGGCCGCTGAAAATGTCATGGATTCCGCTGCGCGGCCGGATAGACCCATTTCCATTGTTATTGAAGGCCCAAGCAGAATAGGCAAAACAGTATGGGCCAGGTCTTTGGGCCCTCACAATTATTTGTGTGGGCATTTAGATCTAAGCCCAAAAGTATACAGCAACAGTGCTTGGTATAACGTCATTGATGACGTCAACCCCCAATACCTAAAGCACTTTAAGGAATTCATGGGGGCCCAGAAGGACTGGCAATCCAACTGTAAATACGGAAAGCCAGTTCGAATTAAAGGTGGAATTCCCACTATCTTCCTCTGCAATCCAGGAGAGGGATCCTCATTTAAACTCTGGTTGGACAAACCAGAGCAAGGAGCACTCAAGAATTGGGCAACAGCAAACGCTATATTCTGCGATGTCCAATCCCCTTTCTGGGTACAAGAGGAAGTGTCCCATTCAGGAGCCACTGCACACAGAGGCGAAGAAGGCCAAGAGGAAAGTTCCTGA |
|
Protein Sequence
|
MAPPKRFKIQAKNYFITYPRCSLSKEDCLAQLLNIQTPSNKKYIHVARELHEDGEPHLHVLVQFEGKFVCTNSRFFDLVSPNRSNHFHPNIQGAKSSSDVKSYVDKDGDTITWGEFQVDGRSARGGQQTANDAAAEALNAGSKEAALQIIREKLPEKYLFQFHNLVSNLDRIFSPPPSVYSSPFSSSSFNAVPDIISDWAAENVMDSAARPDRPISIVIEGPSRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDWQSNCKYGKPVRIKGGIPTIFLCNPGEGSSFKLWLDKPEQGALKNWATANAIFCDVQSPFWVQEEVSHSGATAHRGEEGQEESS |
|
NCBI Accession
|
NP_808845.1
|
|
Location
|
2267-2524 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 |
|
Coding Region
|
ATGGGGAACCTCACCTCCATGTGTTGGTGCAGTTCGAAGGCAAATTCGTCTGCACAAATAGCAGATTCTTCGATCTGGTCTCACCGAACAGATCGAATCACTTTCACCCCAACATCCAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTACGTCGATAAGGACGGGGATACCATCACCTGGGGTGAATTCCAGGTCGACGGCAGATCTGCTAGAGGAGGCCAGCAGACTGCTAACGACGCAGCCGCAGAGGCTCTAA |
|
Protein Sequence
|
MGNLTSMCWCSSKANSSAQIADSSIWSHRTDRITFTPTSRELNPAPMSSPTSIRTGIPSPGVNSRSTADLLEEASRLLTTQPQRL |