Sweet potato leaf curl virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000864705.1
Isolate USA
Release date 2015/2/13
Submitter Lotrakul,P., Valverde,R.A., Clark,C.A., Sim,J., De La Torre,R.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_004650
TAATATTACCGGTGCCCGCCGCGCCCTTCAAAAGTGGGCCCCACAAGGGGACCACGCGTCTTTTCCGTACTCTCTTTAATTATGACATTGCTTTATAAGGACCAATCCTGTTTCGCCCTTGGCGCCCAAGTATGGCTGAATTGTGGGACCCTTTGCAGAACCCACTACCAGATACTTTATACGGTTTTAGGTGTATGCTATCCGTAAAATACTTGCAAAGTATTTTGAAGAAATACGAGCCAGGAACCTTAGGGTTCGAGCTCTGTTCGGAGTTAATCCGTATATTCAGAGTCAGGCAGTATGACAGGGCGAATGCGCGTTTCGCCGAGATTTCATCCATATGGGGGGAGACCGGTAAGACGGAGGCTGAACTTCGAGACAGCTATCGTGCCCTACACTGGGAATGCTGTCCCAATTGCTGCCCGAAGCTATGTCCCGGTTTCAAGAGGCGTCCGGATGAAGAGAAGGAGGGGTGACCGCATCCCGAAGGGATGTGTGGGTCCCTGTAAGGTCCAGGACTATGAGTTCAAGATGGACGTTCCCCACACGGGAACGTTTGTCTGTGTCTCGGATTTTACAAGGGGTACTGGGCTTACCCATCGCCTGGGTAAGCGTGTTTGTGTGAAGTCCATGGGTATAGATGGGAAGGTCTGGATGGATGATAATGTGGCCAAGAGAGATCACACCAATATCATCACGTATTGGTTGATTCGTGACAGAAGGCCCAATAAGGATCCGCTGAACTTTGGCCAGATCTTCACCATGTACGACAATGAGCCCACTACTGCTAAGATCCGAATGGATCTGAGGGATAGAATGCAGGTCTTGAAGAAGTTTTCTGTTACAGTTTCAGGAGGTCCATACAGCCACAAGGAGCAGGCATTAATTAGGAAGTTTTTTAAGGGTTTGTATAATCATGTTACTTACAATCACAAGGAAGAAGCTAAGTATGAGAATCAATTAGAGAATGCACTTATGCTGTATAGTGCTAGCAGTCATGCTAGTAATCCTGTGTATCAGACCCTGCGTTGCAGGGCTTATTTCTATGATTCGCATAATAATTAATAAAATTATATTTTATTAATAGAGTAATACCTTTACATCATCATTACAATCTACAGTATCTAATTCATCTATCCAAGAACATACTCTTGGAAGATATCTAATAACAAAAACTAAATTAACTAAACTAAAAAACCCTAAATTTGCTAATTCATTACATATGCGCCATTTAAGGCGTTCCAAAATACCAGTCCAACTGTGAATAGCACCAGTTAGACGGGTCGTCAAGATCCGGAATTGGAGGAAGATCTTGTGGAATCCCAGTTGCCTCCTTTCCCTGTAGTTCACCCTCAGCTGGAATTTGAGGATGGTTCTCCCCTGTGTGCTCTCGTGGACATACATTATTCTGAGATGGAACGGTGCAGTCCGACCCACAGACATGGGGTTGGTGTCGAATTCGACTGCTCTCGTAGTCTGAGCATGACTTATTGATTCCCCTGTGCGTGAATCCATGCTGGTACTTGCAGGTTGTTGTTATGAAGGCTGAACAGCCGCAACCCTTCCACACTATCCTCGTCCTCTGTTCAGGAACTTTCCTCTTGGCCTTCTTCGCCTCTGTGTGCAGTGGCTCCTGAATGGGACACTTCCTCTTGTACCCAGAAAGGGGATTGGACATCGCAGAATATAGCGTTTGCTGTTGCCCAATTCTTGAGTGCTCCTTGCTCTGGTTTGTCCAACCAGAGTTTAAATGAGGATCCCTCTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTCGAACTGGCTTTCCGTATTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTATACTTTTGGGCTTAGATCTAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCCCATACTGTTTTGCCTATTCTGCTTGGGCCTTCAATAACAATGGAAATGGGTCTATCCGGCCGCGCAGCGGAATCCATGACATTTTCAGCGGCCCAGTCGCTGATAATGTCAGGAACGGCATTGAAAGAAGAAGACGAAAAAGGGGAAGAATATACAGAAGGTGGAGGAGAAAAAATCCTATCTAAATTACTAACTAAATTATGAAATTGAAATAAATATTTTTCAGGGAGTTTCTCCCTGATTATTTGCAACGCAGCTTCTTTAGAACCTGCGTTTAGAGCCTCTGCGGCTGCGTCGTTAGCAGTCTGCTGGCCTCCTCTAGCAGATCTGCCGTCGACCTGGAATTCACCCCAGGTGATGGTATCCCCGTCCTTATCGACGTAGGACTTGACATCGGAGCTGGATTTAGCTCCCTGGATGTTGGGGTGAAAGTGATTCGATCTGTTCGGTGAGACCAGATCGAAGAATCTGCTATTTGTGCAGACGAATTTGCCTTCGAACTGCACCAACACATGGAGGTGAGGTTCCCCATCCTCGTGCAGTTCTCTTGCTACGTGTATATATTTTTTGTTGCTGGGTGTTTGTATATTTAGGAGTTGGGCTAGGCAGTCCTCTTTTGAGAGAGAACAGCGTGGATAAGTAATAAAATAATTTTTGGCCTGAATTTTAAAACGTTTTGGAGGAGCCATTTGGAGACACGCATAAGTTCAAATGAATTGGAGACTGGAGACAATATATAGTATGTCTCCAAATGGCATTCTGGTAATTTAGAAGATCCTTTTAACTTTAATTCAAATTCCGACAACTCTGGGTCCACCAAAAGGCGGGCACCGTAT

Gene Information

NCBI Accession NP_808840.1
Location 132-476
Gene Name AV2
Protein Name precoat protein AV2
Coding Region ATGGCTGAATTGTGGGACCCTTTGCAGAACCCACTACCAGATACTTTATACGGTTTTAGGTGTATGCTATCCGTAAAATACTTGCAAAGTATTTTGAAGAAATACGAGCCAGGAACCTTAGGGTTCGAGCTCTGTTCGGAGTTAATCCGTATATTCAGAGTCAGGCAGTATGACAGGGCGAATGCGCGTTTCGCCGAGATTTCATCCATATGGGGGGAGACCGGTAAGACGGAGGCTGAACTTCGAGACAGCTATCGTGCCCTACACTGGGAATGCTGTCCCAATTGCTGCCCGAAGCTATGTCCCGGTTTCAAGAGGCGTCCGGATGAAGAGAAGGAGGGGTGA
Protein Sequence MAELWDPLQNPLPDTLYGFRCMLSVKYLQSILKKYEPGTLGFELCSELIRIFRVRQYDRANARFAEISSIWGETGKTEAELRDSYRALHWECCPNCCPKLCPGFKRRPDEEKEG

NCBI Accession NP_808841.1
Location 301-1065
Gene Name AV1
Protein Name coat protein AV1
Coding Region ATGACAGGGCGAATGCGCGTTTCGCCGAGATTTCATCCATATGGGGGGAGACCGGTAAGACGGAGGCTGAACTTCGAGACAGCTATCGTGCCCTACACTGGGAATGCTGTCCCAATTGCTGCCCGAAGCTATGTCCCGGTTTCAAGAGGCGTCCGGATGAAGAGAAGGAGGGGTGACCGCATCCCGAAGGGATGTGTGGGTCCCTGTAAGGTCCAGGACTATGAGTTCAAGATGGACGTTCCCCACACGGGAACGTTTGTCTGTGTCTCGGATTTTACAAGGGGTACTGGGCTTACCCATCGCCTGGGTAAGCGTGTTTGTGTGAAGTCCATGGGTATAGATGGGAAGGTCTGGATGGATGATAATGTGGCCAAGAGAGATCACACCAATATCATCACGTATTGGTTGATTCGTGACAGAAGGCCCAATAAGGATCCGCTGAACTTTGGCCAGATCTTCACCATGTACGACAATGAGCCCACTACTGCTAAGATCCGAATGGATCTGAGGGATAGAATGCAGGTCTTGAAGAAGTTTTCTGTTACAGTTTCAGGAGGTCCATACAGCCACAAGGAGCAGGCATTAATTAGGAAGTTTTTTAAGGGTTTGTATAATCATGTTACTTACAATCACAAGGAAGAAGCTAAGTATGAGAATCAATTAGAGAATGCACTTATGCTGTATAGTGCTAGCAGTCATGCTAGTAATCCTGTGTATCAGACCCTGCGTTGCAGGGCTTATTTCTATGATTCGCATAATAATTAA
Protein Sequence MTGRMRVSPRFHPYGGRPVRRRLNFETAIVPYTGNAVPIAARSYVPVSRGVRMKRRRGDRIPKGCVGPCKVQDYEFKMDVPHTGTFVCVSDFTRGTGLTHRLGKRVCVKSMGIDGKVWMDDNVAKRDHTNIITYWLIRDRRPNKDPLNFGQIFTMYDNEPTTAKIRMDLRDRMQVLKKFSVTVSGGPYSHKEQALIRKFFKGLYNHVTYNHKEEAKYENQLENALMLYSASSHASNPVYQTLRCRAYFYDSHNN

NCBI Accession NP_808842.1
Location 1081-1515
Gene Name AC3
Protein Name AC3
Coding Region ATGGATTCACGCACAGGGGAATCAATAAGTCATGCTCAGACTACGAGAGCAGTCGAATTCGACACCAACCCCATGTCTGTGGGTCGGACTGCACCGTTCCATCTCAGAATAATGTATGTCCACGAGAGCACACAGGGGAGAACCATCCTCAAATTCCAGCTGAGGGTGAACTACAGGGAAAGGAGGCAACTGGGATTCCACAAGATCTTCCTCCAATTCCGGATCTTGACGACCCGTCTAACTGGTGCTATTCACAGTTGGACTGGTATTTTGGAACGCCTTAAATGGCGCATATGTAATGAATTAGCAAATTTAGGGTTTTTTAGTTTAGTTAATTTAGTTTTTGTTATTAGATATCTTCCAAGAGTATGTTCTTGGATAGATGAATTAGATACTGTAGATTGTAATGATGATGTAAAGGTATTACTCTATTAA
Protein Sequence MDSRTGESISHAQTTRAVEFDTNPMSVGRTAPFHLRIMYVHESTQGRTILKFQLRVNYRERRQLGFHKIFLQFRILTTRLTGAIHSWTGILERLKWRICNELANLGFFSLVNLVFVIRYLPRVCSWIDELDTVDCNDDVKVLLY

NCBI Accession NP_808843.1
Location 1232-1678
Gene Name AC2
Protein Name transactivator protein AC2
Coding Region ATGTCCAATCCCCTTTCTGGGTACAAGAGGAAGTGTCCCATTCAGGAGCCACTGCACACAGAGGCGAAGAAGGCCAAGAGGAAAGTTCCTGAACAGAGGACGAGGATAGTGTGGAAGGGTTGCGGCTGTTCAGCCTTCATAACAACAACCTGCAAGTACCAGCATGGATTCACGCACAGGGGAATCAATAAGTCATGCTCAGACTACGAGAGCAGTCGAATTCGACACCAACCCCATGTCTGTGGGTCGGACTGCACCGTTCCATCTCAGAATAATGTATGTCCACGAGAGCACACAGGGGAGAACCATCCTCAAATTCCAGCTGAGGGTGAACTACAGGGAAAGGAGGCAACTGGGATTCCACAAGATCTTCCTCCAATTCCGGATCTTGACGACCCGTCTAACTGGTGCTATTCACAGTTGGACTGGTATTTTGGAACGCCTTAA
Protein Sequence MSNPLSGYKRKCPIQEPLHTEAKKAKRKVPEQRTRIVWKGCGCSAFITTTCKYQHGFTHRGINKSCSDYESSRIRHQPHVCGSDCTVPSQNNVCPREHTGENHPQIPAEGELQGKEATGIPQDLPPIPDLDDPSNWCYSQLDWYFGTP

NCBI Accession NP_808844.1
Location 1587-2681
Gene Name AC1
Protein Name replication initiation protein AC1
Coding Region ATGGCTCCTCCAAAACGTTTTAAAATTCAGGCCAAAAATTATTTTATTACTTATCCACGCTGTTCTCTCTCAAAAGAGGACTGCCTAGCCCAACTCCTAAATATACAAACACCCAGCAACAAAAAATATATACACGTAGCAAGAGAACTGCACGAGGATGGGGAACCTCACCTCCATGTGTTGGTGCAGTTCGAAGGCAAATTCGTCTGCACAAATAGCAGATTCTTCGATCTGGTCTCACCGAACAGATCGAATCACTTTCACCCCAACATCCAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTACGTCGATAAGGACGGGGATACCATCACCTGGGGTGAATTCCAGGTCGACGGCAGATCTGCTAGAGGAGGCCAGCAGACTGCTAACGACGCAGCCGCAGAGGCTCTAAACGCAGGTTCTAAAGAAGCTGCGTTGCAAATAATCAGGGAGAAACTCCCTGAAAAATATTTATTTCAATTTCATAATTTAGTTAGTAATTTAGATAGGATTTTTTCTCCTCCACCTTCTGTATATTCTTCCCCTTTTTCGTCTTCTTCTTTCAATGCCGTTCCTGACATTATCAGCGACTGGGCCGCTGAAAATGTCATGGATTCCGCTGCGCGGCCGGATAGACCCATTTCCATTGTTATTGAAGGCCCAAGCAGAATAGGCAAAACAGTATGGGCCAGGTCTTTGGGCCCTCACAATTATTTGTGTGGGCATTTAGATCTAAGCCCAAAAGTATACAGCAACAGTGCTTGGTATAACGTCATTGATGACGTCAACCCCCAATACCTAAAGCACTTTAAGGAATTCATGGGGGCCCAGAAGGACTGGCAATCCAACTGTAAATACGGAAAGCCAGTTCGAATTAAAGGTGGAATTCCCACTATCTTCCTCTGCAATCCAGGAGAGGGATCCTCATTTAAACTCTGGTTGGACAAACCAGAGCAAGGAGCACTCAAGAATTGGGCAACAGCAAACGCTATATTCTGCGATGTCCAATCCCCTTTCTGGGTACAAGAGGAAGTGTCCCATTCAGGAGCCACTGCACACAGAGGCGAAGAAGGCCAAGAGGAAAGTTCCTGA
Protein Sequence MAPPKRFKIQAKNYFITYPRCSLSKEDCLAQLLNIQTPSNKKYIHVARELHEDGEPHLHVLVQFEGKFVCTNSRFFDLVSPNRSNHFHPNIQGAKSSSDVKSYVDKDGDTITWGEFQVDGRSARGGQQTANDAAAEALNAGSKEAALQIIREKLPEKYLFQFHNLVSNLDRIFSPPPSVYSSPFSSSSFNAVPDIISDWAAENVMDSAARPDRPISIVIEGPSRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDWQSNCKYGKPVRIKGGIPTIFLCNPGEGSSFKLWLDKPEQGALKNWATANAIFCDVQSPFWVQEEVSHSGATAHRGEEGQEESS

NCBI Accession NP_808845.1
Location 2267-2524
Gene Name AC4
Protein Name AC4
Coding Region ATGGGGAACCTCACCTCCATGTGTTGGTGCAGTTCGAAGGCAAATTCGTCTGCACAAATAGCAGATTCTTCGATCTGGTCTCACCGAACAGATCGAATCACTTTCACCCCAACATCCAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTACGTCGATAAGGACGGGGATACCATCACCTGGGGTGAATTCCAGGTCGACGGCAGATCTGCTAGAGGAGGCCAGCAGACTGCTAACGACGCAGCCGCAGAGGCTCTAA
Protein Sequence MGNLTSMCWCSSKANSSAQIADSSIWSHRTDRITFTPTSRELNPAPMSSPTSIRTGIPSPGVNSRSTADLLEEASRLLTTQPQRL

References More References in PubMed

1

Tracking Sweet Potato Leaf Curl Virus through Field Production: Implications for Sustainable Sweetpotato Production and Breeding Practices.

Andreason SA, et al.  Plants (Basel). 2024 May 2;13(9):1267. doi: 10.3390/plants13091267.

PMID: 38732482
2

Large-Scale Seedling Grow-Out Experiments Do Not Support Seed Transmission of Sweet Potato Leaf Curl Virus in Sweet Potato.

Andreason SA, et al.  Plants (Basel). 2021 Jan 12;10(1):139. doi: 10.3390/plants10010139.

PMID: 33445460
3

Development of novel detection system for sweet potato leaf curl virus using recombinant scFv.

Cho SH, et al.  Sci Rep. 2020 May 15;10(1):8039. doi: 10.1038/s41598-020-64996-0.

PMID: 32415170
4

C4 Protein of Sweet Potato Leaf Curl Virus Regulates Brassinosteroid Signaling Pathway through Interaction with AtBIN2 and Affects Male Fertility in Arabidopsis.

Bi H, et al.  Front Plant Sci. 2017 Sep 27;8:1689. doi: 10.3389/fpls.2017.01689. eCollection 2017.

PMID: 29021807
5

First Report of Sweet potato leaf curl virus on Blue Morning Glory in Greece.

Fiallo-Olivé E, et al.  Plant Dis. 2014 May;98(5):700. doi: 10.1094/PDIS-09-13-0986-PDN.

PMID: 30708557
6

Molecular characterization of sweet potato leaf curl virus isolate from China (SPLCV-CN) and its phylogenetic relationship with other members of the Geminiviridae.

Luan YS, et al.  Virus Genes. 2007 Oct;35(2):379-85. doi: 10.1007/s11262-007-0084-1. Epub 2007 Feb 21.

PMID: 17318425
7

First Report of Sweet potato leaf curl virus in Peru.

Fuentes S, et al.  Plant Dis. 2003 Jan;87(1):98. doi: 10.1094/PDIS.2003.87.1.98C.

PMID: 30812710
8

First Report of Sweet potato leaf curl virus in China.

Luan YS, et al.  Plant Dis. 2006 Aug;90(8):1111. doi: 10.1094/PD-90-1111C.

PMID: 30781325
9

Virus Incidence of Sweet Potato in Korea from 2011 to 2014.

Kim J, et al.  Plant Pathol J. 2017 Oct;33(5):467-477. doi: 10.5423/PPJ.OA.08.2016.0167. Epub 2017 Oct 1.

PMID: 29018310
10

Genetic diversity of sweet potato begomoviruses in the United States and identification of a natural recombinant between sweet potato leaf curl virus and sweet potato leaf curl Georgia virus.

Zhang SC, et al.  Arch Virol. 2011 Jun;156(6):955-68. doi: 10.1007/s00705-011-0930-2. Epub 2011 Feb 8.

PMID: 21302123