Bean yellow mosaic Mexico virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000893575.1
Isolate Mexico
Release date 2015/2/22
Submitter Idris,A.M., Brown,J.K.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_015487
ACCGGATGGCCGCGCGATTTTTTTCCCCCCCACGTGGACGCTCGCGATTTTCTCCCCTCGCGCGTACCTTCCTCTTTAATTTGAATTAAAGGGTACCCGTTTTTTGGACCAATCGTTTTGCTCGCTGGCAGCTTAGATATTATTAACAACTTGGTGACCAAGTTGTTGGGTGACCGTTATAAATTAAAGAGGCTTGTGGCCCACTGACTTTAATTCAAAATGCCTAAGCGCGATCTACCATGGCGCTCGATCGCGGGAACATCGAAGGTGAGCCGCAATGTCAATTATTCCCCTCGTGGAGGAAGTGGGCCAAGAACCACCAAGGCCTCTGAATGGGTAAACAGGCCCATGTACAGGAAGCCCAGGATCTACCGGACGCTAAGGACGCCCGACGTGCCACGAGGCTGTGAAGGCCCCTGCAAGGTACAGTCTTACGAACAGCGTCATGATATCTCTCATACTGGGAAGGTGATGTGTATATCCGATGTGACACGTGGTAATGGTATTACGCACCGTGTCGGTAAACGTTTTTGTGTTAAGTCTGTGTACATATTAGGTAAAGTCTGGATGGACGAGAACATCAAGTTGAAGAACCACACGAACAGCGTCATGTTCTGGTTGGTTAGGGACCGTAGACCGTATGGAACTCCTATGGATTTCGGACAGGTGTTCAACATGTTCGACAACGAGCCTAGTACCGCTACTGTGAAGAACGATCTCCGTGATCGTTATCAGGTCATGCACAAGTTCTACGCCAAGGTTACAGGTGGACAGTATGCTAGCAACGAGCAGGCATTGGTCAAGCGTTTCTGGAAGGTGAACAATCACGTTGTGTATAACCACCAAGAAGCTGGGAAGTATGAGAATCATACGGAGAACGCTCTGTTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTATATGCAACGCTTAAGATCCGGATCTACTTCTACGATTCGATCATGAATTAATAAAGTTTGAATTTTATTGAATGATTCTCGAGAACATAATTTACATACGACCTGGCTGTTGCGAAACGAACAGCTCTGATTACATTGTTAATGGAAATAACGCCTAATCTATCTAAATACATATTAACTAAGAATCTAAACCTAGCTAAATAGGTCGACCCAGAAGCTGTCGTCGATGTCGTCCAGACTTGGAAGTTCAGGTAGGCTTTGTGGAGATGCAACGCTCTCCTCAGGTTGTGGTTGAACCGTATCTGAACGTGGAACACCCTGGTTCTCGTATACAGTGGATCCTCTACTCTGTACATCCTGAAATAGAGGGGATTTTCTATCTCCCAGATATACACGCCATTCTCCGCCTGAGGTACAGTGATGAATTCCCCTGTGCGTGAATCCATGTCCCGTGCAGCCTATGTGGAAATATATGGAGCACCCGCACCGTAAATCAATCCGCCTCCTCCTGATGGCCCTCCTCTTGGCTTGCCTGTGCGCTGTCTTGATAGAGGGCGGATGTGAGGGTGATGAAGACCGCATTCTTGATGGTCCAGTTCCTCAATGATGCGTTTTCATCTTTGTTGAGGAAATCTTTATAGCTAGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCGCCTTTAATTTGAACTGGCTTGCCGTACTTACAATTTGATTGCCAGTCCTTTTGGGCCCCAATCAATTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTTTGGTACACTCGAGCATTGAAATCCAGGTGTCCACTAAGATAATTATGTGGGCCCAAAGCACGAGCCCACATTGTCTTCCCCGTTCTTGAATCACCTTCGACGATGATACTTACTGGCCTCTCCGGCCGCGCAGAGGCACCACTTCCAAAATACTGATCAGCCCATTCTTGCATCTCGTCCGGGACGTTAGTGAAGGAAGAGAGGGGAAACGGCGGAACCCACGGTTCCGGAGCCTTTGCGAAGATCCTCTCAAGGTTGGCCTTGAGATTGTGAAAATCTCTCACAAAGTCTCTAGGTTGTTCCTCCTTTAAAATTTGGAGTGCTTGTTGCACTCCGCCGGCGTTCAATGCCTTGGCGTATGAATCGTTAACAGTCTGCTTGCCTCCTCTAGCAGATCTGCCGTCGATCTGGAATTCGCCCCATTCCAGGGTATCTCCGTCCTTCTCGACATAGGACTTGACGTCGGAGCTTGATTCAGCTCCCTGATAATTTCCATGGAAATGGGATGATCTTGAAGGGGATACCAGGTCGAAGAATCTGTAATTCTGTGTTTTGAATTTCCCTTCGAACTGGATGAGCACGTGGAGATGAGGATTCCCATTTTCATGCAGCTCTCTGCAGATCTTAATATATTTCTTGTTTGTTGGGGTGTTTAATGCTAACAATTGGGAAAGTGTTTCCTCTTTGGTTAGGGAACACTGGGGATATGTGAGGAAATAGTTTTTGGCGTTAATAAGGAATTTCCTAGGAGCGGATGGCATTTTTGTAATAATGGGAGGTGAACCCAATTCAGGTCTCTCACAAAACTCTGTAGAATTGGGTCTATTGGGTTCTTATTTATACTAGAACCTCAGATAGCGCTAGTGGGGCACGTGGCGGCCATCCGCTATAATATT

Gene Information

NCBI Accession YP_004429232.1
Location 220-975
Protein Name coat protein
Coding Region ATGCCTAAGCGCGATCTACCATGGCGCTCGATCGCGGGAACATCGAAGGTGAGCCGCAATGTCAATTATTCCCCTCGTGGAGGAAGTGGGCCAAGAACCACCAAGGCCTCTGAATGGGTAAACAGGCCCATGTACAGGAAGCCCAGGATCTACCGGACGCTAAGGACGCCCGACGTGCCACGAGGCTGTGAAGGCCCCTGCAAGGTACAGTCTTACGAACAGCGTCATGATATCTCTCATACTGGGAAGGTGATGTGTATATCCGATGTGACACGTGGTAATGGTATTACGCACCGTGTCGGTAAACGTTTTTGTGTTAAGTCTGTGTACATATTAGGTAAAGTCTGGATGGACGAGAACATCAAGTTGAAGAACCACACGAACAGCGTCATGTTCTGGTTGGTTAGGGACCGTAGACCGTATGGAACTCCTATGGATTTCGGACAGGTGTTCAACATGTTCGACAACGAGCCTAGTACCGCTACTGTGAAGAACGATCTCCGTGATCGTTATCAGGTCATGCACAAGTTCTACGCCAAGGTTACAGGTGGACAGTATGCTAGCAACGAGCAGGCATTGGTCAAGCGTTTCTGGAAGGTGAACAATCACGTTGTGTATAACCACCAAGAAGCTGGGAAGTATGAGAATCATACGGAGAACGCTCTGTTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTATATGCAACGCTTAAGATCCGGATCTACTTCTACGATTCGATCATGAATTAA
Protein Sequence MPKRDLPWRSIAGTSKVSRNVNYSPRGGSGPRTTKASEWVNRPMYRKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHTGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKVWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIMN

NCBI Accession YP_004429233.1
Location 972-1370
Protein Name REn
Coding Region ATGGATTCACGCACAGGGGAATTCATCACTGTACCTCAGGCGGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAGGATGTACAGAGTAGAGGATCCACTGTATACGAGAACCAGGGTGTTCCACGTTCAGATACGGTTCAACCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCCTACCTGAACTTCCAAGTCTGGACGACATCGACGACAGCTTCTGGGTCGACCTATTTAGCTAGGTTTAGATTCTTAGTTAATATGTATTTAGATAGATTAGGCGTTATTTCCATTAACAATGTAATCAGAGCTGTTCGTTTCGCAACAGCCAGGTCGTATGTAAATTATGTTCTCGAGAATCATTCAATAAAATTCAAACTTTATTAA
Protein Sequence MDSRTGEFITVPQAENGVYIWEIENPLYFRMYRVEDPLYTRTRVFHVQIRFNHNLRRALHLHKAYLNFQVWTTSTTASGSTYLARFRFLVNMYLDRLGVISINNVIRAVRFATARSYVNYVLENHSIKFKLY

NCBI Accession YP_004429234.1
Location 1117-1506
Protein Name TrAP
Coding Region ATGCGGTCTTCATCACCCTCACATCCGCCCTCTATCAAGACAGCGCACAGGCAAGCCAAGAGGAGGGCCATCAGGAGGAGGCGGATTGATTTACGGTGCGGGTGCTCCATATATTTCCACATAGGCTGCACGGGACATGGATTCACGCACAGGGGAATTCATCACTGTACCTCAGGCGGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAGGATGTACAGAGTAGAGGATCCACTGTATACGAGAACCAGGGTGTTCCACGTTCAGATACGGTTCAACCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCCTACCTGAACTTCCAAGTCTGGACGACATCGACGACAGCTTCTGGGTCGACCTATTTAGCTAG
Protein Sequence MRSSSPSHPPSIKTAHRQAKRRAIRRRRIDLRCGCSIYFHIGCTGHGFTHRGIHHCTSGGEWRVYLGDRKSPLFQDVQSRGSTVYENQGVPRSDTVQPQPEESVASPQSLPELPSLDDIDDSFWVDLFS

NCBI Accession YP_004429235.1
Location 1418-2506
Protein Name Rep
Coding Region ATGCCATCCGCTCCTAGGAAATTCCTTATTAACGCCAAAAACTATTTCCTCACATATCCCCAGTGTTCCCTAACCAAAGAGGAAACACTTTCCCAATTGTTAGCATTAAACACCCCAACAAACAAGAAATATATTAAGATCTGCAGAGAGCTGCATGAAAATGGGAATCCTCATCTCCACGTGCTCATCCAGTTCGAAGGGAAATTCAAAACACAGAATTACAGATTCTTCGACCTGGTATCCCCTTCAAGATCATCCCATTTCCATGGAAATTATCAGGGAGCTGAATCAAGCTCCGACGTCAAGTCCTATGTCGAGAAGGACGGAGATACCCTGGAATGGGGCGAATTCCAGATCGACGGCAGATCTGCTAGAGGAGGCAAGCAGACTGTTAACGATTCATACGCCAAGGCATTGAACGCCGGCGGAGTGCAACAAGCACTCCAAATTTTAAAGGAGGAACAACCTAGAGACTTTGTGAGAGATTTTCACAATCTCAAGGCCAACCTTGAGAGGATCTTCGCAAAGGCTCCGGAACCGTGGGTTCCGCCGTTTCCCCTCTCTTCCTTCACTAACGTCCCGGACGAGATGCAAGAATGGGCTGATCAGTATTTTGGAAGTGGTGCCTCTGCGCGGCCGGAGAGGCCAGTAAGTATCATCGTCGAAGGTGATTCAAGAACGGGGAAGACAATGTGGGCTCGTGCTTTGGGCCCACATAATTATCTTAGTGGACACCTGGATTTCAATGCTCGAGTGTACCAAAACGAAGTGGAGTATAACGTCATTGATGACGTCGCACCGCACTATCTAAAGCTAAAGCACTGGAAAGAATTGATTGGGGCCCAAAAGGACTGGCAATCAAATTGTAAGTACGGCAAGCCAGTTCAAATTAAAGGCGGGATCCCATCAATCGTGCTTTGCAATCCTGGTGAGGGTGCTAGCTATAAAGATTTCCTCAACAAAGATGAAAACGCATCATTGAGGAACTGGACCATCAAGAATGCGGTCTTCATCACCCTCACATCCGCCCTCTATCAAGACAGCGCACAGGCAAGCCAAGAGGAGGGCCATCAGGAGGAGGCGGATTGA
Protein Sequence MPSAPRKFLINAKNYFLTYPQCSLTKEETLSQLLALNTPTNKKYIKICRELHENGNPHLHVLIQFEGKFKTQNYRFFDLVSPSRSSHFHGNYQGAESSSDVKSYVEKDGDTLEWGEFQIDGRSARGGKQTVNDSYAKALNAGGVQQALQILKEEQPRDFVRDFHNLKANLERIFAKAPEPWVPPFPLSSFTNVPDEMQEWADQYFGSGASARPERPVSIIVEGDSRTGKTMWARALGPHNYLSGHLDFNARVYQNEVEYNVIDDVAPHYLKLKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLNKDENASLRNWTIKNAVFITLTSALYQDSAQASQEEGHQEEAD

References More References in PubMed

1

NAC Candidate Gene Marker for bgm-1 and Interaction With QTL for Resistance to Bean Golden Yellow Mosaic Virus in Common Bean.

Soler-Garzón A, et al.  Front Plant Sci. 2021 Mar 25;12:628443. doi: 10.3389/fpls.2021.628443. eCollection 2021.

PMID: 33841459
2

Bean golden yellow mosaic virus from Chiapas, Mexico: Characterization, Pseudorecombination with Other Bean-Infecting Geminiviruses and Germ Plasm Screening.

Garrido-Ramirez ER, et al.  Phytopathology. 2000 Nov;90(11):1224-32. doi: 10.1094/PHYTO.2000.90.11.1224.

PMID: 18944424
3

Macroptilium yellow mosaic virus, a New Begomovirus Infecting Macroptilium lathyroides in Cuba.

Ramos PL, et al.  Plant Dis. 2002 Sep;86(9):1049. doi: 10.1094/PDIS.2002.86.9.1049B.

PMID: 30818538
4

Cuban Isolate of Bean golden yellow mosaic virus is a Member of the Mesoamerican BGYMV Group.

Echemendía AL, et al.  Plant Dis. 2001 Sep;85(9):1030. doi: 10.1094/PDIS.2001.85.9.1030C.

PMID: 30823097
5

Molecular characterization and experimental host range of an isolate of Wissadula golden mosaic St. Thomas virus.

Collins AM, et al.  Virus Genes. 2009 Dec;39(3):387-95. doi: 10.1007/s11262-009-0401-y. Epub 2009 Sep 20.

PMID: 19768650
6

First Report of Tomato yellow leaf curl virus in Tomato in Costa Rica.

Barboza N, et al.  Plant Dis. 2014 May;98(5):699. doi: 10.1094/PDIS-08-13-0881-PDN.

PMID: 30708517
7

Calopogonium golden mosaic virus Identified in Phaseolus vulgaris from Western and Northern Regions of Costa Rica.

Diaz M, et al.  Plant Dis. 2002 Feb;86(2):188. doi: 10.1094/PDIS.2002.86.2.188B.

PMID: 30823326
8

Molecular characterization and experimental host range of an isolate of Macroptilium golden mosaic virus that infects Wissadula amplissima in Jamaica.

Collins A, et al.  Virus Res. 2010 Jun;150(1-2):148-52. doi: 10.1016/j.virusres.2010.03.008. Epub 2010 Mar 25.

PMID: 20347895
9

Simultaneous Detection of Both RNA and DNA Viruses Infecting Dry Bean and Occurrence of Mixed Infections by BGYMV, BCMV and BCMNV in the Central-West Region of Mexico.

Chiquito-Almanza E, et al.  Viruses. 2017 Mar 30;9(4):63. doi: 10.3390/v9040063.

PMID: 28358318
10

Seasonal Distribution of Bemisia tabaci (Hemiptera: Aleyrodidae) MEAM1 Species and Impact on Incidence of Begomoviral Diseases in Baja California Sur.

Medina-Hernández D, et al.  J Econ Entomol. 2019 May 22;112(3):1055-1061. doi: 10.1093/jee/toz052.

PMID: 30918973