Exomis microphylla latent virus
Basic Information
| Genus |
Becurtovirus
|
| NCBI Assembly |
GCF_002937325.1 |
| Isolate |
South Africa |
| Release date |
2018/2/22 |
| Submitter |
Claverie,S., Bernardo,P., Kraberger,S., Hartnady,P., Lefeuvre,P., Lett,J.-M., Filloux,D., Harkins,G.W., Varsani,A., Martin,D.P., Roumagnac,P. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
TAAGATTCCCCGCATTTGCCCTGCCACGTGTCATAATCTGCGTGGTTGAAATAAAGTAGTGGTCCCCACCACTAATATTAAATAAAAGAAAAATGATGTTGACTGGTCAAAAGTTGCGGCTGCTTTATTAAAGTAGCTTTATTAAAGTAACTTTATGACGTCAGCCACGTGATCTTGTCGGGAGATTTAAATTTAAATTATTGTACGGACGTTGCTTGCTGGGCAAGGAAAGTAAAATAAACCGGTCCGGTTTTATTTAAATAATTTAATATTGTCGATGATGGTTTGTTTGCCGGACTGGTTATTTTTGCTCCTAATATTGAGTATTTTAGTACAAGCAGCCGTTGGATTTTATGGTTCCTTTCAGGGTGAGAGATTTTCCTCGAAATTATCCGGCATTTCTAGCCGCTGCGACGAGCTGTTTGTTGCGTTACAACAAGTGGTTTATTCTAGGAACGCTTCCAGAGGTAACAGGAACCCTTACTGTAGAAGAGCAGGAGAACTTTATACAGTTCCAGAAGCAGGTGAGGAAAATCCTCAGGTCTAATTGGTCCTTTGTTAGAAAGTGTAGGGTATACGAAATCGTGTATACGAAGTATGGCGGCCCAGAACCTGAAGAGAAAGTCCCAGAGTGGGACCCCGTGGATGCGGAGGAAGAAGACGAAGTCTGGGAAGTCCCAGTGGAAGAAGTATCCGGTGAAAAGGCCTGTGAATCGAAGCAGGGCTGTTAAGCTGAAGATGTATGACGATACGTTTGGAGGATCTGGCATCGGTTCTACCGTCAGTAATGACGGTATGATAACGATGCTCAACAATTACGTACAGGGTATTGGAGATAGCCAGAGGTCGACGAATGTGACCGTTACGAAACGTCTGAAGTTCGATATGGCGTTGATGGCCAGTTCAGGTTTCTGGTCCGCACCAAACTACATGGCGCAATATCATTGGGTTATTGTAGATCGAGATGTCGGTAGCACGTTTCCTGATAAGTTGGATACAATATTTGATATTCCTAGTCAAGGGCAGGGGATGCCCTCCACGTATAGGATCCGGAGGGATATGAACGAGAGGTTCATAGTGAAGAGGAAGTGGACTACACACATGATGTCTACGGGTACAGATTACGGCGGTAAGCAGACGTATAAGGCGCCTTCAATGCCGAATTACAAGAAGGCAATGAACATCAATATACGGAATATCAATGTGAAGACGATGTGGAAGGACACCGGAGGTGGGAAGTATGAAGACGTTAAGGAGAACGCGATATTGTATGTTGTCGTCAACGATAACACTGATAATACGAATATGTACGCAACACTGTTTGGCAACTGTAGGATGTATTTTTACTGAATAATGTAAATTAACACAATGATGTTGTTGTATTCAAAAATGAGACTTGGCGAATTTGTTTGGGGGAGATAATAAATGTGATATTCATAATATCAAGTACTTTTGCATTACAAACACGAAAACGAAAAAAAGTAAAAACTGAAACCCCTAAAAAAAGTTACCGGACCTAATAATCTTGTTGCATCACCTCGTGTTTAGATAGGGCGAGCCCGTTAGGGCGAGCAAAGAGATTCGTCGGAGACGAATCGTAAAGGCGAAGCCTTTACCCATCGGCTTGCCGATGGAACCAAACTTCTGTAGAGGAGAGATAGTACACCTCGCAGTTCGCATAGAACCAGTCTCTCATTGCGTCGCTCATGCATTGAATCCAGTCCATGTCTGGATTTGTTATTGCGATGCAAGGTCTCCCTCCTGGAATTTTAACGTTTGGTTTGTGTTTAATCCAAACTGTATACTCTTCATTACAACCAATTAGGGATTTAAATAATTCAGTTTGGATTTTTTGATATCTTATATCATCTATTACATGATAAGTAGTATGGTTTACATCGTAGTTCGTCCAGTCAAGGACCTGGCCAGACATGTAGTGATGTCTGCCTAGAGATCTTGCCCATTGGGTTTTTCCTGTTCTTGAAGGTCCGCAGATGTACAGACTTCTTGGACGGACTGGTCTGTTGTCTGGCTCCTGGGGGTTAAAATAGTATCATTAATATCTTCGTTGCATAATAGGTTCTGTTCTGTTAACCATAACTCATAGTGTTCTATGATGTCGTAGTCGTTATCCGTCAGAACAGAACCCTTGCAGTTATTACATAAATCGTAATTAAAGGTTGATTCACTCACGAAATATATATTATCTTCCGCCCACTGTTTGACGATATCAGGTAACCCGTTGAATTCTGTCCATCTGGGCGTATAAGGAGGCACAATCTCCCTGTAGTGATAGTTGGCGAAGGAAAGAATGGATGGCCATCTGAGGACGTAGTCTGTTGGGCATGATTCTCGGACGTTGTTGAGGAACTCGTCCTTGGTGTTGGATGCGTCGAGAATTCTTCTCCATTCGTCATTTGATCTACCAACGCTGTTCGGAGATCTCCCAGAGGATCGTAACTCACCCATCGTTCTGGGGTTTGTATCCTCCTTTGTGATGTAGTCCATTGCTCGCTTTGGGGCGTTGAGTCCGTCGATCCTTGGGTGTAACTCCTTCCCATTTGGGAGGAGAATATTGAAAAACAGGTTCCCATTAACCTGTAATTTTTTATTGCATTGGAAGATGCAGTGTGTGTGGAATCCGCCCTCTGGATGTTCTTCAGTAGGGCTGTGGTGTTCTAGGGAAACAGCAAGGAATAATATTTCGTATGGTAGTAGAAGTGTGTGTAATTTTTCGAATATATAGTCTTTGAAATCTCCACCTATTTGTGAATAGGTGAGGAAAGCATTTTTCTTTTGAAAACGGTAGTAGGCTGTGTATGAGGAAGCAGGTCTGTTTCTGTTTGGGACACGTGGCATTTTGAAGGAGTAAGAGTAAGTAAGGAATAGTTGGTTACTCTTCTGGGTAGGGGGTCTGAAAAAAATTCTCATATATAGAGTAAGAGTATACAGTAGTATGTGTGGCAAATGCGGA
Gene Information
|
NCBI Accession
|
YP_009465978.1
|
|
Location
|
278-547 |
|
Protein Name
|
v3 |
|
Coding Region
|
ATGATGGTTTGTTTGCCGGACTGGTTATTTTTGCTCCTAATATTGAGTATTTTAGTACAAGCAGCCGTTGGATTTTATGGTTCCTTTCAGGGTGAGAGATTTTCCTCGAAATTATCCGGCATTTCTAGCCGCTGCGACGAGCTGTTTGTTGCGTTACAACAAGTGGTTTATTCTAGGAACGCTTCCAGAGGTAACAGGAACCCTTACTGTAGAAGAGCAGGAGAACTTTATACAGTTCCAGAAGCAGGTGAGGAAAATCCTCAGGTCTAA |
|
Protein Sequence
|
MMVCLPDWLFLLLILSILVQAAVGFYGSFQGERFSSKLSGISSRCDELFVALQQVVYSRNASRGNRNPYCRRAGELYTVPEAGEENPQV |
|
NCBI Accession
|
YP_009465979.1
|
|
Location
|
354-731 |
|
Protein Name
|
v2 |
|
Coding Region
|
ATGGTTCCTTTCAGGGTGAGAGATTTTCCTCGAAATTATCCGGCATTTCTAGCCGCTGCGACGAGCTGTTTGTTGCGTTACAACAAGTGGTTTATTCTAGGAACGCTTCCAGAGGTAACAGGAACCCTTACTGTAGAAGAGCAGGAGAACTTTATACAGTTCCAGAAGCAGGTGAGGAAAATCCTCAGGTCTAATTGGTCCTTTGTTAGAAAGTGTAGGGTATACGAAATCGTGTATACGAAGTATGGCGGCCCAGAACCTGAAGAGAAAGTCCCAGAGTGGGACCCCGTGGATGCGGAGGAAGAAGACGAAGTCTGGGAAGTCCCAGTGGAAGAAGTATCCGGTGAAAAGGCCTGTGAATCGAAGCAGGGCTGTTAA |
|
Protein Sequence
|
MVPFRVRDFPRNYPAFLAAATSCLLRYNKWFILGTLPEVTGTLTVEEQENFIQFQKQVRKILRSNWSFVRKCRVYEIVYTKYGGPEPEEKVPEWDPVDAEEEDEVWEVPVEEVSGEKACESKQGC |
|
NCBI Accession
|
YP_009465980.1
|
|
Location
|
598-1350 |
|
Protein Name
|
capsid protein |
|
Coding Region
|
ATGGCGGCCCAGAACCTGAAGAGAAAGTCCCAGAGTGGGACCCCGTGGATGCGGAGGAAGAAGACGAAGTCTGGGAAGTCCCAGTGGAAGAAGTATCCGGTGAAAAGGCCTGTGAATCGAAGCAGGGCTGTTAAGCTGAAGATGTATGACGATACGTTTGGAGGATCTGGCATCGGTTCTACCGTCAGTAATGACGGTATGATAACGATGCTCAACAATTACGTACAGGGTATTGGAGATAGCCAGAGGTCGACGAATGTGACCGTTACGAAACGTCTGAAGTTCGATATGGCGTTGATGGCCAGTTCAGGTTTCTGGTCCGCACCAAACTACATGGCGCAATATCATTGGGTTATTGTAGATCGAGATGTCGGTAGCACGTTTCCTGATAAGTTGGATACAATATTTGATATTCCTAGTCAAGGGCAGGGGATGCCCTCCACGTATAGGATCCGGAGGGATATGAACGAGAGGTTCATAGTGAAGAGGAAGTGGACTACACACATGATGTCTACGGGTACAGATTACGGCGGTAAGCAGACGTATAAGGCGCCTTCAATGCCGAATTACAAGAAGGCAATGAACATCAATATACGGAATATCAATGTGAAGACGATGTGGAAGGACACCGGAGGTGGGAAGTATGAAGACGTTAAGGAGAACGCGATATTGTATGTTGTCGTCAACGATAACACTGATAATACGAATATGTACGCAACACTGTTTGGCAACTGTAGGATGTATTTTTACTGA |
|
Protein Sequence
|
MAAQNLKRKSQSGTPWMRRKKTKSGKSQWKKYPVKRPVNRSRAVKLKMYDDTFGGSGIGSTVSNDGMITMLNNYVQGIGDSQRSTNVTVTKRLKFDMALMASSGFWSAPNYMAQYHWVIVDRDVGSTFPDKLDTIFDIPSQGQGMPSTYRIRRDMNERFIVKRKWTTHMMSTGTDYGGKQTYKAPSMPNYKKAMNINIRNINVKTMWKDTGGGKYEDVKENAILYVVVNDNTDNTNMYATLFGNCRMYFY |
|
NCBI Accession
|
YP_009465981.1
|
|
Location
|
1613-2016,2163-2931 |
|
Protein Name
|
replication associated protein |
|
Coding Region
|
ATGAGAATTTTTTTCAGACCCCCTACCCAGAAGAGTAACCAACTATTCCTTACTTACTCTTACTCCTTCAAAATGCCACGTGTCCCAAACAGAAACAGACCTGCTTCCTCATACACAGCCTACTACCGTTTTCAAAAGAAAAATGCTTTCCTCACCTATTCACAAATAGGTGGAGATTTCAAAGACTATATATTCGAAAAATTACACACACTTCTACTACCATACGAAATATTATTCCTTGCTGTTTCCCTAGAACACCACAGCCCTACTGAAGAACATCCAGAGGGCGGATTCCACACACACTGCATCTTCCAATGCAATAAAAAATTACAGGTTAATGGGAACCTGTTTTTCAATATTCTCCTCCCAAATGGGAAGGAGTTACACCCAAGGATCGACGGACTCAACGCCCCAAAGCGAGCAATGGACTACATCACAAAGGAGGATACAAACCCCAGAACGATGGGTGAGTTACGATCCTCTGGGAGATCTCCGAACAGCGTTGGTAGATCAAATGACGAATGGAGAAGAATTCTCGACGCATCCAACACCAAGGACGAGTTCCTCAACAACGTCCGAGAATCATGCCCAACAGACTACGTCCTCAGATGGCCATCCATTCTTTCCTTCGCCAACTATCACTACAGGGAGATTGTGCCTCCTTATACGCCCAGATGGACAGAATTCAACGGGTTACCTGATATCGTCAAACAGTGGGCGGAAGATAATATATATTTCGTGAGTGAATCAACCTTTAATTACGATTTATTCCGTCCAAGAAGTCTGTACATCTGCGGACCTTCAAGAACAGGAAAAACCCAATGGGCAAGATCTCTAGGCAGACATCACTACATGTCTGGCCAGGTCCTTGACTGGACGAACTACGATGTAAACCATACTACTTATCATGTAATAGATGATATAAGATATCAAAAAATCCAAACTGAATTATTTAAATCCCTAATTGGTTGTAATGAAGAGTATACAGTTTGGATTAAACACAAACCAAACGTTAAAATTCCAGGAGGGAGACCTTGCATCGCAATAACAAATCCAGACATGGACTGGATTCAATGCATGAGCGACGCAATGAGAGACTGGTTCTATGCGAACTGCGAGGTGTACTATCTCTCCTCTACAGAAGTTTGGTTCCATCGGCAAGCCGATGGGTAA |
|
Protein Sequence
|
MRIFFRPPTQKSNQLFLTYSYSFKMPRVPNRNRPASSYTAYYRFQKKNAFLTYSQIGGDFKDYIFEKLHTLLLPYEILFLAVSLEHHSPTEEHPEGGFHTHCIFQCNKKLQVNGNLFFNILLPNGKELHPRIDGLNAPKRAMDYITKEDTNPRTMGELRSSGRSPNSVGRSNDEWRRILDASNTKDEFLNNVRESCPTDYVLRWPSILSFANYHYREIVPPYTPRWTEFNGLPDIVKQWAEDNIYFVSESTFNYDLFRPRSLYICGPSRTGKTQWARSLGRHHYMSGQVLDWTNYDVNHTTYHVIDDIRYQKIQTELFKSLIGCNEEYTVWIKHKPNVKIPGGRPCIAITNPDMDWIQCMSDAMRDWFYANCEVYYLSSTEVWFHRQADG |
|
NCBI Accession
|
YP_009465982.1
|
|
Location
|
1948-2931 |
|
Protein Name
|
repA |
|
Coding Region
|
ATGAGAATTTTTTTCAGACCCCCTACCCAGAAGAGTAACCAACTATTCCTTACTTACTCTTACTCCTTCAAAATGCCACGTGTCCCAAACAGAAACAGACCTGCTTCCTCATACACAGCCTACTACCGTTTTCAAAAGAAAAATGCTTTCCTCACCTATTCACAAATAGGTGGAGATTTCAAAGACTATATATTCGAAAAATTACACACACTTCTACTACCATACGAAATATTATTCCTTGCTGTTTCCCTAGAACACCACAGCCCTACTGAAGAACATCCAGAGGGCGGATTCCACACACACTGCATCTTCCAATGCAATAAAAAATTACAGGTTAATGGGAACCTGTTTTTCAATATTCTCCTCCCAAATGGGAAGGAGTTACACCCAAGGATCGACGGACTCAACGCCCCAAAGCGAGCAATGGACTACATCACAAAGGAGGATACAAACCCCAGAACGATGGGTGAGTTACGATCCTCTGGGAGATCTCCGAACAGCGTTGGTAGATCAAATGACGAATGGAGAAGAATTCTCGACGCATCCAACACCAAGGACGAGTTCCTCAACAACGTCCGAGAATCATGCCCAACAGACTACGTCCTCAGATGGCCATCCATTCTTTCCTTCGCCAACTATCACTACAGGGAGATTGTGCCTCCTTATACGCCCAGATGGACAGAATTCAACGGGTTACCTGATATCGTCAAACAGTGGGCGGAAGATAATATATATTTCGTGAGTGAATCAACCTTTAATTACGATTTATGTAATAACTGCAAGGGTTCTGTTCTGACGGATAACGACTACGACATCATAGAACACTATGAGTTATGGTTAACAGAACAGAACCTATTATGCAACGAAGATATTAATGATACTATTTTAACCCCCAGGAGCCAGACAACAGACCAGTCCGTCCAAGAAGTCTGTACATCTGCGGACCTTCAAGAACAGGAAAAACCCAATGGGCAAGATCTCTAG |
|
Protein Sequence
|
MRIFFRPPTQKSNQLFLTYSYSFKMPRVPNRNRPASSYTAYYRFQKKNAFLTYSQIGGDFKDYIFEKLHTLLLPYEILFLAVSLEHHSPTEEHPEGGFHTHCIFQCNKKLQVNGNLFFNILLPNGKELHPRIDGLNAPKRAMDYITKEDTNPRTMGELRSSGRSPNSVGRSNDEWRRILDASNTKDEFLNNVRESCPTDYVLRWPSILSFANYHYREIVPPYTPRWTEFNGLPDIVKQWAEDNIYFVSESTFNYDLCNNCKGSVLTDNDYDIIEHYELWLTEQNLLCNEDINDTILTPRSQTTDQSVQEVCTSADLQEQEKPNGQDL |