Sweet potato leaf curl Georgia virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000842125.1
Release date 2015/2/12
Submitter Lotrakul,P., Valverde,R.A., Clark,C.A., Fauquet,C.M.
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_004640
ACCGGTGCCCGCCGCGCCCTTTTAAAGTGGGCCCCACACGCTTTGCTTTAATTATTTAAAGGCGTGCCTGGTGTAGACTTGGTCGCCAAGTATGGCTGAATTGTGGGACCCTCTGCAAAACCCACTACCAGATACTTTATACGGTTTCCGTTGTATGCTTTCTGTAAAATACCTGCAAGGTATTTTGAAGAAATACGAGCCAGGAACCCTAGGGTTCGAGCTCTGTTCGGAGTTAATCCGTATATTCAGGGTCAGGCAGTATGACAGGGCGAATTCCCGTTTCGCGGAGATTTCATCCCTATGGGGGGAGACCGGTAAGACGGAGGCTGAACTTCGAGACAGCTATCGTGCCCTACACTGGGAATGCTGTCCCAATTGCTGCCCGAAGCTATGTCCCGGTTTCAAGAGGCGTCCGGATGAAGAGAAAGAGGGGTGACCGCATCCCGAAGGGATGTGTTGGTCCCTGTAAGGTCCAGGACTATGAGTTCAAGATGGACGTTCCCCACACGGGAACGTTTGTCTGTGTCTCGGATTTTACAAGGGGGACTGGGCTTACCCATCGTTTGGGTAAGAGGGTGTGTATTAAGTCCATGGGTATTGATGGTAAGGTTTGGATGGATGACAACGTCGCCAAAAGAGACCATACCAATATTATTACTTATTGGTTGGTCCGAGATCGGAGGCCCAATATGGATCCATTAACATTTGCACAGGCTTTTACTATGTATGACAATGAGCCCACTACTGCTAAGATCCGTATGGATCTGAGAGATAGAATGCAGGTCCTGAAGAAGTTCTCTGTTACTGTATCTGGTGGCCCTTATAACCACAAGGAACAGGCTTTAGTTAGGAAGTTTTTTAAGGGATTGTATAATCATGTTACTTATAATCATAAGGAGGAGGCCAAGTATGAGAATCATTTAGAGAATGCGTTAATGTTGTATTCTGCTAGCAGTCATGCTAGCAATCCTGTGTATCAGACCCTGCGTTGCAGGGCTTATTTTTATGATTCGCACAACAATTAATAAAGAAGTATTTTTATATCATCTTTACAATCTATTACATCGATTTCTTCTATCCATCTAACTGATTCAGGCAAATGCCTGATTACATAAACTAAATTGATAAGAGAAAAAAAACCTAAACTAGCTAAGCTATTACATATATGCCATTTAAGGCGTTGCAAAATACCAGTCCAACTGGGAATAACACCAGTCAGCTGGGTTGTCACTATTCGGAATTGGAGGAATATCTTCAGGAATCCAATTTCCCTCCTGTTCCTGTGGTTGACTTGAAGCTGCAACTTGATGACCTTCTTTGTGTTTATGTTGTTGGTATGGACATACAACAACCGTAGATGGAATGGAGCAGTCTGACCCACAGACATGGGGTTGTTGAAGAATTCTGCTGCTCTCGTAGTCTGTGCATGACTTAGTGATTCCCCTGTGCGTGAATCCATGCTGATATTTACAGTCGTTGGTGATGAAGGCTGAGCAACCACAGCCCTTCCACACTATCCTAGTCCTCGGCTCAGGAGCCTTCCTCTTGGCTTTCTTCGCCGCTGTGTGCAGAGGTTCCTGAATGGGACACTTCCTCTTGTATCCAGAAGGGGCTGTCGACATCACAGAATATTGCGTTCTTAACAGCCCAGTTCTTAAGCGCCTCTTGTTCTGGCTTGTCCAGCCAGAATTTAAAAGAGGAACCCTCTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTACAGTTGCTTTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTATTGGGGATTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTACACTTTTGGGCTCAAGTCCAAATGACCACACAGATAATTATGTGGACCTAAAGACCGTGCCCAAACTGTTTTACCTATCCTACTTGGGCCTTCTATTACAATACTAATGGGCCTATCTGGCCGCGCAGCGGAATCCATGACATTTTCAGCGGCCCAGTCGCTGATAATGTCAGGTACATTATTGAAAGAAGAAGATAAAAAAGGAGAAGAATATACAGAAGGAGGAGGAGAAAAAATTCTATCTAAATTACTACGTAAATTATGATATTGAAAAATAAAATCTCTAGGGAGTTTCTCCCTAATTATTTGTAATGCTGCTTCAGCAGAGCCTGCGTTTAAGGCCTCTGCTGCTGCATCATTAGCTGTCTGCTGACCTCCTCTAGCAGATCTTCCGTCGACTTGAAAAGTACCCCAGTCGATGTAATCACCGTCTTTCTCGATGTAGGACTTGACATCTGATGATGATTTAGCTCCCTGGAAATTTGGATGGAATTGGTTGGAGCTGTTGGGGTGTTGCAGGTCGAAATGTCTGGGGTTTTTAAATTGGGCTTTACCCTTGAACTGGATGAGAGCATGGAGGTGCAAAGACCCATCTTGGTGTTCTTCTTGACTAACTCTGATAAACAATTTATCAGATGGGCAGTTTATTGCCTTTAATAGTTCAAGAGCTGTTTCTTTAGAGAGAGAACATTTGGGATAAGTAAGAAAGACATTTTTGGCTGAGACTCTAAAACCTGGTTGACGAGGCATATTGGTGTCCCTCTAAACTCCACGGAATTGGTGTCTTTGGTGTCCCATTTATACCTGGGACACCAATGGCATTTTGGTAAAAAAAAACCTTTAATTTGAATTCTGAAATCCTATTGGTCCTCCGTAAAGCGGGCACCGTATTAATATT

Gene Information

NCBI Accession NP_808767.1
Location 92-436
Gene Name AV2
Protein Name precoat protein
Coding Region ATGGCTGAATTGTGGGACCCTCTGCAAAACCCACTACCAGATACTTTATACGGTTTCCGTTGTATGCTTTCTGTAAAATACCTGCAAGGTATTTTGAAGAAATACGAGCCAGGAACCCTAGGGTTCGAGCTCTGTTCGGAGTTAATCCGTATATTCAGGGTCAGGCAGTATGACAGGGCGAATTCCCGTTTCGCGGAGATTTCATCCCTATGGGGGGAGACCGGTAAGACGGAGGCTGAACTTCGAGACAGCTATCGTGCCCTACACTGGGAATGCTGTCCCAATTGCTGCCCGAAGCTATGTCCCGGTTTCAAGAGGCGTCCGGATGAAGAGAAAGAGGGGTGA
Protein Sequence MAELWDPLQNPLPDTLYGFRCMLSVKYLQGILKKYEPGTLGFELCSELIRIFRVRQYDRANSRFAEISSLWGETGKTEAELRDSYRALHWECCPNCCPKLCPGFKRRPDEEKEG

NCBI Accession NP_808768.1
Location 261-1025
Gene Name AV1
Protein Name coat protein
Coding Region ATGACAGGGCGAATTCCCGTTTCGCGGAGATTTCATCCCTATGGGGGGAGACCGGTAAGACGGAGGCTGAACTTCGAGACAGCTATCGTGCCCTACACTGGGAATGCTGTCCCAATTGCTGCCCGAAGCTATGTCCCGGTTTCAAGAGGCGTCCGGATGAAGAGAAAGAGGGGTGACCGCATCCCGAAGGGATGTGTTGGTCCCTGTAAGGTCCAGGACTATGAGTTCAAGATGGACGTTCCCCACACGGGAACGTTTGTCTGTGTCTCGGATTTTACAAGGGGGACTGGGCTTACCCATCGTTTGGGTAAGAGGGTGTGTATTAAGTCCATGGGTATTGATGGTAAGGTTTGGATGGATGACAACGTCGCCAAAAGAGACCATACCAATATTATTACTTATTGGTTGGTCCGAGATCGGAGGCCCAATATGGATCCATTAACATTTGCACAGGCTTTTACTATGTATGACAATGAGCCCACTACTGCTAAGATCCGTATGGATCTGAGAGATAGAATGCAGGTCCTGAAGAAGTTCTCTGTTACTGTATCTGGTGGCCCTTATAACCACAAGGAACAGGCTTTAGTTAGGAAGTTTTTTAAGGGATTGTATAATCATGTTACTTATAATCATAAGGAGGAGGCCAAGTATGAGAATCATTTAGAGAATGCGTTAATGTTGTATTCTGCTAGCAGTCATGCTAGCAATCCTGTGTATCAGACCCTGCGTTGCAGGGCTTATTTTTATGATTCGCACAACAATTAA
Protein Sequence MTGRIPVSRRFHPYGGRPVRRRLNFETAIVPYTGNAVPIAARSYVPVSRGVRMKRKRGDRIPKGCVGPCKVQDYEFKMDVPHTGTFVCVSDFTRGTGLTHRLGKRVCIKSMGIDGKVWMDDNVAKRDHTNIITYWLVRDRRPNMDPLTFAQAFTMYDNEPTTAKIRMDLRDRMQVLKKFSVTVSGGPYNHKEQALVRKFFKGLYNHVTYNHKEEAKYENHLENALMLYSASSHASNPVYQTLRCRAYFYDSHNN

NCBI Accession NP_808769.1
Location 1022-1459
Gene Name AC3
Protein Name AC3 protein
Coding Region ATGGATTCACGCACAGGGGAATCACTAAGTCATGCACAGACTACGAGAGCAGCAGAATTCTTCAACAACCCCATGTCTGTGGGTCAGACTGCTCCATTCCATCTACGGTTGTTGTATGTCCATACCAACAACATAAACACAAAGAAGGTCATCAAGTTGCAGCTTCAAGTCAACCACAGGAACAGGAGGGAAATTGGATTCCTGAAGATATTCCTCCAATTCCGAATAGTGACAACCCAGCTGACTGGTGTTATTCCCAGTTGGACTGGTATTTTGCAACGCCTTAAATGGCATATATGTAATAGCTTAGCTAGTTTAGGTTTTTTTTCTCTTATCAATTTAGTTTATGTAATCAGGCATTTGCCTGAATCAGTTAGATGGATAGAAGAAATCGATGTAATAGATTGTAAAGATGATATAAAAATACTTCTTTATTAA
Protein Sequence MDSRTGESLSHAQTTRAAEFFNNPMSVGQTAPFHLRLLYVHTNNINTKKVIKLQLQVNHRNRREIGFLKIFLQFRIVTTQLTGVIPSWTGILQRLKWHICNSLASLGFFSLINLVYVIRHLPESVRWIEEIDVIDCKDDIKILLY

NCBI Accession NP_808770.1
Location 1173-1622
Gene Name AC2
Protein Name AC2 protein
Coding Region ATGTCGACAGCCCCTTCTGGATACAAGAGGAAGTGTCCCATTCAGGAACCTCTGCACACAGCGGCGAAGAAAGCCAAGAGGAAGGCTCCTGAGCCGAGGACTAGGATAGTGTGGAAGGGCTGTGGTTGCTCAGCCTTCATCACCAACGACTGTAAATATCAGCATGGATTCACGCACAGGGGAATCACTAAGTCATGCACAGACTACGAGAGCAGCAGAATTCTTCAACAACCCCATGTCTGTGGGTCAGACTGCTCCATTCCATCTACGGTTGTTGTATGTCCATACCAACAACATAAACACAAAGAAGGTCATCAAGTTGCAGCTTCAAGTCAACCACAGGAACAGGAGGGAAATTGGATTCCTGAAGATATTCCTCCAATTCCGAATAGTGACAACCCAGCTGACTGGTGTTATTCCCAGTTGGACTGGTATTTTGCAACGCCTTAA
Protein Sequence MSTAPSGYKRKCPIQEPLHTAAKKAKRKAPEPRTRIVWKGCGCSAFITNDCKYQHGFTHRGITKSCTDYESSRILQQPHVCGSDCSIPSTVVVCPYQQHKHKEGHQVAASSQPQEQEGNWIPEDIPPIPNSDNPADWCYSQLDWYFATP

NCBI Accession NP_808771.1
Location 1531-2625
Gene Name AC1
Protein Name rep protein
Coding Region ATGCCTCGTCAACCAGGTTTTAGAGTCTCAGCCAAAAATGTCTTTCTTACTTATCCCAAATGTTCTCTCTCTAAAGAAACAGCTCTTGAACTATTAAAGGCAATAAACTGCCCATCTGATAAATTGTTTATCAGAGTTAGTCAAGAAGAACACCAAGATGGGTCTTTGCACCTCCATGCTCTCATCCAGTTCAAGGGTAAAGCCCAATTTAAAAACCCCAGACATTTCGACCTGCAACACCCCAACAGCTCCAACCAATTCCATCCAAATTTCCAGGGAGCTAAATCATCATCAGATGTCAAGTCCTACATCGAGAAAGACGGTGATTACATCGACTGGGGTACTTTTCAAGTCGACGGAAGATCTGCTAGAGGAGGTCAGCAGACAGCTAATGATGCAGCAGCAGAGGCCTTAAACGCAGGCTCTGCTGAAGCAGCATTACAAATAATTAGGGAGAAACTCCCTAGAGATTTTATTTTTCAATATCATAATTTACGTAGTAATTTAGATAGAATTTTTTCTCCTCCTCCTTCTGTATATTCTTCTCCTTTTTTATCTTCTTCTTTCAATAATGTACCTGACATTATCAGCGACTGGGCCGCTGAAAATGTCATGGATTCCGCTGCGCGGCCAGATAGGCCCATTAGTATTGTAATAGAAGGCCCAAGTAGGATAGGTAAAACAGTTTGGGCACGGTCTTTAGGTCCACATAATTATCTGTGTGGTCATTTGGACTTGAGCCCAAAAGTGTACAGCAACAGTGCTTGGTATAACGTCATTGATGACGTCAATCCCCAATACCTAAAGCACTTTAAGGAATTCATGGGGGCCCAGAAGGACTGGCAAAGCAACTGTAAATACGGAAAGCCAGTTCAAATTAAAGGTGGAATTCCCACTATCTTCCTCTGCAATCCAGGAGAGGGTTCCTCTTTTAAATTCTGGCTGGACAAGCCAGAACAAGAGGCGCTTAAGAACTGGGCTGTTAAGAACGCAATATTCTGTGATGTCGACAGCCCCTTCTGGATACAAGAGGAAGTGTCCCATTCAGGAACCTCTGCACACAGCGGCGAAGAAAGCCAAGAGGAAGGCTCCTGA
Protein Sequence MPRQPGFRVSAKNVFLTYPKCSLSKETALELLKAINCPSDKLFIRVSQEEHQDGSLHLHALIQFKGKAQFKNPRHFDLQHPNSSNQFHPNFQGAKSSSDVKSYIEKDGDYIDWGTFQVDGRSARGGQQTANDAAAEALNAGSAEAALQIIREKLPRDFIFQYHNLRSNLDRIFSPPPSVYSSPFLSSSFNNVPDIISDWAAENVMDSAARPDRPISIVIEGPSRIGKTVWARSLGPHNYLCGHLDLSPKVYSNSAWYNVIDDVNPQYLKHFKEFMGAQKDWQSNCKYGKPVQIKGGIPTIFLCNPGEGSSFKFWLDKPEQEALKNWAVKNAIFCDVDSPFWIQEEVSHSGTSAHSGEESQEEGS

NCBI Accession NP_808772.1
Location 2211-2468
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGTCTTTGCACCTCCATGCTCTCATCCAGTTCAAGGGTAAAGCCCAATTTAAAAACCCCAGACATTTCGACCTGCAACACCCCAACAGCTCCAACCAATTCCATCCAAATTTCCAGGGAGCTAAATCATCATCAGATGTCAAGTCCTACATCGAGAAAGACGGTGATTACATCGACTGGGGTACTTTTCAAGTCGACGGAAGATCTGCTAGAGGAGGTCAGCAGACAGCTAATGATGCAGCAGCAGAGGCCTTAA
Protein Sequence MGLCTSMLSSSSRVKPNLKTPDISTCNTPTAPTNSIQISRELNHHQMSSPTSRKTVITSTGVLFKSTEDLLEEVSRQLMMQQQRP

References More References in PubMed

1

First Report of Sweet potato leaf curl Georgia virus on Sweet Potato in China.

Qin Y, et al.  Plant Dis. 2013 Oct;97(10):1388. doi: 10.1094/PDIS-10-12-0967-PDN.

PMID: 30722158

2

Molecular characterization of sweet potato leaf curl virus isolate from China (SPLCV-CN) and its phylogenetic relationship with other members of the Geminiviridae.

Luan YS, et al.  Virus Genes. 2007 Oct;35(2):379-85. doi: 10.1007/s11262-007-0084-1. Epub 2007 Feb 21.

PMID: 17318425

3

Occurrence of Sweet potato feathery mottle virus and Sweet potato leaf curl Georgia virus on Sweet Potato in India.

Prasanth G, et al.  Plant Dis. 2008 Feb;92(2):311. doi: 10.1094/PDIS-92-2-0311B.

PMID: 30769415

4

Genetic diversity of sweet potato begomoviruses in the United States and identification of a natural recombinant between sweet potato leaf curl virus and sweet potato leaf curl Georgia virus.

Zhang SC, et al.  Arch Virol. 2011 Jun;156(6):955-68. doi: 10.1007/s00705-011-0930-2. Epub 2011 Feb 8.

PMID: 21302123

5

First Report of Sweet potato leaf curl Georgia virus Infecting Tall Morning Glory (Ipomoea purpurea) in China.

Zhang SB, et al.  Plant Dis. 2014 Nov;98(11):1588. doi: 10.1094/PDIS-11-13-1161-PDN.

PMID: 30699798

6

Complete genome sequence of a novel monopartite begomovirus infecting sweet potato in China.

Liu Q, et al.  Virus Genes. 2013 Dec;47(3):591-4. doi: 10.1007/s11262-013-0982-3. Epub 2013 Sep 22.

PMID: 24057883

7

Genetic identification of two sweet-potato-infecting begomoviruses in South Africa.

Esterhuizen LL, et al.  Arch Virol. 2012 Nov;157(11):2241-5. doi: 10.1007/s00705-012-1398-4. Epub 2012 Jul 20.

PMID: 22814698

8

Detection of Viruses in Sweetpotato from Honduras and Guatemala Augmented by Deep-Sequencing of Small-RNAs.

Kashif M, et al.  Plant Dis. 2012 Oct;96(10):1430-1437. doi: 10.1094/PDIS-03-12-0268-RE.

PMID: 30727310