Stachytarpheta leaf curl virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000843765.1
Isolate China:Hainan province
Release date 2015/2/12
Submitter Zhou,X., Fan,S.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_004091
CCGGATGGCCGCGATTTTTTTAAGGTGGTCCCACCCACGTGCATTGGTCGGCCACTGAGAACGCTCCCTCAAAGCCTATTTAATTCAAATGTATTATAAATACTTGGTCCCCAAGTACTAAAGCTAAACATGTGGGATCCACTTGTAAACGAGTTCCCTGAAACCGTACATGGTCTACGGTGCATGCTCGCTGTAAAATACTTGCAGTTAGTTGAGCAGACATACTCTCCGGATACGTTGGGGTACGATCTCGTGCGAGATTTAATTTTAGTTATCAGAGCTCGAGACTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAACTTCGACAGCCCGTATGTCAACCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGACGTGGGTGAATCGGCCCATGTATCGCAAGCCCAGACTATTCAGAACGTACAGAAGTCCTGATGTGCCCAAAGGTTGTGAAGGCCCATGCAAAGTCCAATCGTATGAACAGAGGCACGACATATCCCATGTGGGTAAAGTATTATGTGTTAGTGATGTCACTCGTGGTAGTGGGCTTACCCATCGTGTTGGTAAGAGATTCTGTGTGAAGTCCGTTTATGTATTGGGTAAAATATGGATGGATGAAAATATCAAGACGAAGAACCATACGAACACTGTGATGTTTTATCTTGTTCGTGATAGAAGGCCCTTTGGTACTGCTATGGACTTTGGTCAGGTGTTTAACATGTATGATAATGAGCCCAGTACTGCTACTATCAAGAATGATCTTCGAGATCGTTATCAAGTTTTGAGGAAATTCACTTCAACAGTCACAGGTGGTCAATATGCTTCTAAGGAACAGGCGTTGGTTAGGAAATTTATGAAGATAAATAATTATGTAGTTTATAATCATCAAGAAGCTGCTAAGTATGAGAATCATACTGAGAATGCGTTATTATTGTATATGGCATGTACTCATGCCAGTAATCCAGTGTATGCTACTTTGAAGATCAAAATCTATTTCTATGATTCTGTTCAGAATTAATAAAAATTGAATTTTATTATACTTGATAATTCTTCATCAATTGTCCCCTCTAATACATTGTATAATACATGAGAAAATGCCCTAATTACATTGTTTATACTAATCACTCCCAAATTGTCTAAATATTTAATACATTGATACTTAAATACTTTTAAAAAACACCAAGTCTGAGGACGTAAATGAGTCCAAATTCTGCAGATTAGAAAACATTGGTGTATCCCCAACGCTTTCCTCAGGTTGTAGTTGAATTGGACTTGGAGTGTTATTACGTCGTGGTTCGTTGAGAACGGCCTCTGGTCGTGCTGGGTGATTTTGAAATATAGGGGATTTCTGACCGTCCAGATATACACGCCATTCTCTGCTTGAGCTGCAGTGATGGGTTCCCCGGTGCGAAAATCCATGATTGTGGCAGCCTATAGCTATGAAATAAGAGCATCCACAAGGGAGGTCAACTCGTCGTCTCCTCGTTGTTCGCTTGGCTATTTTGTGTTGCACCTTGATTGGAACCTGAGTAGAGTGGCCGTTGGATGGTGACGAAGATCGCATTATGTATAGCCCAATTTTTTAATGCGGAATTCTTTTCTTCGTCTAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCATAGGAAGATTGTTGGGATACCACCTTTAATTTGAACTGGCTTCCCATACTTTGTATTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGATAGTGGGGGTCGACGTCATCAATGACGTTATACCAAGCATCATTGCTGTATACCTTTGGGCTGAGATCAAGATGTCCACACAGATAATTGTGTGGTCCTAACGACCTAGCCCACATTGTTTTACCAGTACGACTATCACCTTCTATCACAATACTAATCGGTCTCAAAGGCCGCGCAGCGGCATTGACAACATTATTTGCAGACCATTCATGAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGAAGAAAAAGGACAAACAAATACCTCTAAAGGAGGTGCAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAAAACATAATCTTTTGGAGCTAACTCCTTAATTACATTAAGAGCCTCTGACTTACTGCCTGTGTTAAGTGCTGCGGCGTAAGCGTCATTGGCTGATTGTTGTCCCCCTCTTGCAGATCGTCCGTCGATCTGAAACTCTCCCCACTCGAGGGTGTCTCCGTCCTTATCGATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGACCAAGTCGAAGAATCTGTTATTCGTGCAGACGTATTTTCCCTCGAACTGGATAAGCACGTGGATATGAGGGCTCCCATCTTCGTGAAGCTCTCTGCAGATTTTGATGTATTTTTTGTTGGTTGGGGTTTCTAGGTTTTGAAGTTGGGAGAGTGCTTCCTCTTTAGTTAGAGAGCACTGTGGATAAGTGAGGAAATAATTTTTAGCTTGTATTTTAAAACGACGCGGGGGAGGCATTTTGAGCGTCGTTTTGTATTGGAGACAATCAACTCTATGAAATGAATTGGAGACTGGAGTACAATATATAGTGTGTCTCCAAATGGCATTCTCGTAATTCCTCATAGAAATTCAAAATTTGAATTGGTAAAGCGGCCATCCGTATAATATTA

Gene Information

NCBI Accession NP_671448.1
Location 130-480
Gene Name AV2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCACTTGTAAACGAGTTCCCTGAAACCGTACATGGTCTACGGTGCATGCTCGCTGTAAAATACTTGCAGTTAGTTGAGCAGACATACTCTCCGGATACGTTGGGGTACGATCTCGTGCGAGATTTAATTTTAGTTATCAGAGCTCGAGACTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAACTTCGACAGCCCGTATGTCAACCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGACGTGGGTGAATCGGCCCATGTATCGCAAGCCCAGACTATTCAGAACGTACAGAAGTCCTGA
Protein Sequence MWDPLVNEFPETVHGLRCMLAVKYLQLVEQTYSPDTLGYDLVRDLILVIRARDYVEASRRYSHFHSRIQGASPAELRQPVCQPCCCPHCPRHKQKEDVGESAHVSQAQTIQNVQKS

NCBI Accession NP_671449.1
Location 290-1063
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAACTTCGACAGCCCGTATGTCAACCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGACGTGGGTGAATCGGCCCATGTATCGCAAGCCCAGACTATTCAGAACGTACAGAAGTCCTGATGTGCCCAAAGGTTGTGAAGGCCCATGCAAAGTCCAATCGTATGAACAGAGGCACGACATATCCCATGTGGGTAAAGTATTATGTGTTAGTGATGTCACTCGTGGTAGTGGGCTTACCCATCGTGTTGGTAAGAGATTCTGTGTGAAGTCCGTTTATGTATTGGGTAAAATATGGATGGATGAAAATATCAAGACGAAGAACCATACGAACACTGTGATGTTTTATCTTGTTCGTGATAGAAGGCCCTTTGGTACTGCTATGGACTTTGGTCAGGTGTTTAACATGTATGATAATGAGCCCAGTACTGCTACTATCAAGAATGATCTTCGAGATCGTTATCAAGTTTTGAGGAAATTCACTTCAACAGTCACAGGTGGTCAATATGCTTCTAAGGAACAGGCGTTGGTTAGGAAATTTATGAAGATAAATAATTATGTAGTTTATAATCATCAAGAAGCTGCTAAGTATGAGAATCATACTGAGAATGCGTTATTATTGTATATGGCATGTACTCATGCCAGTAATCCAGTGTATGCTACTTTGAAGATCAAAATCTATTTCTATGATTCTGTTCAGAATTAA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDSPYVNRAAAPTVLVTNKRRTWVNRPMYRKPRLFRTYRSPDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGSGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPFGTAMDFGQVFNMYDNEPSTATIKNDLRDRYQVLRKFTSTVTGGQYASKEQALVRKFMKINNYVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIKIYFYDSVQN

NCBI Accession NP_671450.1
Location 1060-1464
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTTTCGCACCGGGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTATATCTGGACGGTCAGAAATCCCCTATATTTCAAAATCACCCAGCACGACCAGAGGCCGTTCTCAACGAACCACGACGTAATAACACTCCAAGTCCAATTCAACTACAACCTGAGGAAAGCGTTGGGGATACACCAATGTTTTCTAATCTGCAGAATTTGGACTCATTTACGTCCTCAGACTTGGTGTTTTTTAAAAGTATTTAAGTATCAATGTATTAAATATTTAGACAATTTGGGAGTGATTAGTATAAACAATGTAATTAGGGCATTTTCTCATGTATTATACAATGTATTAGAGGGGACAATTGATGAAGAATTATCAAGTATAATAAAATTCAATTTTTATTAA
Protein Sequence MDFRTGEPITAAQAENGVYIWTVRNPLYFKITQHDQRPFSTNHDVITLQVQFNYNLRKALGIHQCFLICRIWTHLRPQTWCFLKVFKYQCIKYLDNLGVISINNVIRAFSHVLYNVLEGTIDEELSSIIKFNFY

NCBI Accession NP_671451.1
Location 1205-1609
Gene Name AC2
Protein Name transcriptional activator protein
Coding Region ATGCGATCTTCGTCACCATCCAACGGCCACTCTACTCAGGTTCCAATCAAGGTGCAACACAAAATAGCCAAGCGAACAACGAGGAGACGACGAGTTGACCTCCCTTGTGGATGCTCTTATTTCATAGCTATAGGCTGCCACAATCATGGATTTTCGCACCGGGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTATATCTGGACGGTCAGAAATCCCCTATATTTCAAAATCACCCAGCACGACCAGAGGCCGTTCTCAACGAACCACGACGTAATAACACTCCAAGTCCAATTCAACTACAACCTGAGGAAAGCGTTGGGGATACACCAATGTTTTCTAATCTGCAGAATTTGGACTCATTTACGTCCTCAGACTTGGTGTTTTTTAAAAGTATTTAA
Protein Sequence MRSSSPSNGHSTQVPIKVQHKIAKRTTRRRRVDLPCGCSYFIAIGCHNHGFSHRGTHHCSSSREWRVYLDGQKSPIFQNHPARPEAVLNEPRRNNTPSPIQLQPEESVGDTPMFSNLQNLDSFTSSDLVFFKSI

NCBI Accession NP_671452.1
Location 1512-2597
Gene Name AC1
Protein Name rep protein
Coding Region ATGCCTCCCCCGCGTCGTTTTAAAATACAAGCTAAAAATTATTTCCTCACTTATCCACAGTGCTCTCTAACTAAAGAGGAAGCACTCTCCCAACTTCAAAACCTAGAAACCCCAACCAACAAAAAATACATCAAAATCTGCAGAGAGCTTCACGAAGATGGGAGCCCTCATATCCACGTGCTTATCCAGTTCGAGGGAAAATACGTCTGCACGAATAACAGATTCTTCGACTTGGTCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGATAAGGACGGAGACACCCTCGAGTGGGGAGAGTTTCAGATCGACGGACGATCTGCAAGAGGGGGACAACAATCAGCCAATGACGCTTACGCCGCAGCACTTAACACAGGCAGTAAGTCAGAGGCTCTTAATGTAATTAAGGAGTTAGCTCCAAAAGATTATGTTTTACAATTTCATAATTTAAATGCTAATTTAGATAGGATTTTTGCACCTCCTTTAGAGGTATTTGTTTGTCCTTTTTCTTCTTCTTCTTTCGATCAAGTTCCAGAAGAACTTCATGAATGGTCTGCAAATAATGTTGTCAATGCCGCTGCGCGGCCTTTGAGACCGATTAGTATTGTGATAGAAGGTGATAGTCGTACTGGTAAAACAATGTGGGCTAGGTCGTTAGGACCACACAATTATCTGTGTGGACATCTTGATCTCAGCCCAAAGGTATACAGCAATGATGCTTGGTATAACGTCATTGATGACGTCGACCCCCACTATCTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAATCCAATACAAAGTATGGGAAGCCAGTTCAAATTAAAGGTGGTATCCCAACAATCTTCCTATGCAATCCAGGACCCAATTCCAGCTATAAAGAGTTCTTAGACGAAGAAAAGAATTCCGCATTAAAAAATTGGGCTATACATAATGCGATCTTCGTCACCATCCAACGGCCACTCTACTCAGGTTCCAATCAAGGTGCAACACAAAATAGCCAAGCGAACAACGAGGAGACGACGAGTTGA
Protein Sequence MPPPRRFKIQAKNYFLTYPQCSLTKEEALSQLQNLETPTNKKYIKICRELHEDGSPHIHVLIQFEGKYVCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQSANDAYAAALNTGSKSEALNVIKELAPKDYVLQFHNLNANLDRIFAPPLEVFVCPFSSSSFDQVPEELHEWSANNVVNAAARPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWAIHNAIFVTIQRPLYSGSNQGATQNSQANNEETTS

NCBI Accession NP_671453.1
Location 2150-2440
Gene Name AC4
Protein Name transcriptional regulator protein
Coding Region ATGGGAGCCCTCATATCCACGTGCTTATCCAGTTCGAGGGAAAATACGTCTGCACGAATAACAGATTCTTCGACTTGGTCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGATAAGGACGGAGACACCCTCGAGTGGGGAGAGTTTCAGATCGACGGACGATCTGCAAGAGGGGGACAACAATCAGCCAATGACGCTTACGCCGCAGCACTTAACACAGGCAGTAAGTCAGAGGCTCTTAATGTAA
Protein Sequence MGALISTCLSSSRENTSARITDSSTWSPQPGQHISIRTFRELNPAPTSSPISIRTETPSSGESFRSTDDLQEGDNNQPMTLTPQHLTQAVSQRLLM

References More References in PubMed

1

Stachytarpheta leaf curl virus is a novel monopartite begomovirus species.

Xiong Q, et al.  Arch Virol. 2005 Nov;150(11):2257-70. doi: 10.1007/s00705-005-0568-z. Epub 2005 Jun 28.

PMID: 15986176
2

[The C4 proteins of Ageratum yellow vein China virus and Stachytarpheta leaf curl virus are suppressors of RNA silencing].

Xiong Q, et al.  Wei Sheng Wu Xue Bao. 2007 Feb;47(1):39-43.

PMID: 17436621
3

Towards area wide management of insect vectored viruses of tomatoes in the Bowen district.

Campbell PR, et al.  Virus Res. 2017 Sep 15;241:228-235. doi: 10.1016/j.virusres.2017.06.011. Epub 2017 Jun 15.

PMID: 28625668