Stachytarpheta leaf curl virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000843765.1 |
| Isolate |
China:Hainan province |
| Release date |
2015/2/12 |
| Submitter |
Zhou,X., Fan,S. |
| Host |
|
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
CCGGATGGCCGCGATTTTTTTAAGGTGGTCCCACCCACGTGCATTGGTCGGCCACTGAGAACGCTCCCTCAAAGCCTATTTAATTCAAATGTATTATAAATACTTGGTCCCCAAGTACTAAAGCTAAACATGTGGGATCCACTTGTAAACGAGTTCCCTGAAACCGTACATGGTCTACGGTGCATGCTCGCTGTAAAATACTTGCAGTTAGTTGAGCAGACATACTCTCCGGATACGTTGGGGTACGATCTCGTGCGAGATTTAATTTTAGTTATCAGAGCTCGAGACTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAACTTCGACAGCCCGTATGTCAACCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGACGTGGGTGAATCGGCCCATGTATCGCAAGCCCAGACTATTCAGAACGTACAGAAGTCCTGATGTGCCCAAAGGTTGTGAAGGCCCATGCAAAGTCCAATCGTATGAACAGAGGCACGACATATCCCATGTGGGTAAAGTATTATGTGTTAGTGATGTCACTCGTGGTAGTGGGCTTACCCATCGTGTTGGTAAGAGATTCTGTGTGAAGTCCGTTTATGTATTGGGTAAAATATGGATGGATGAAAATATCAAGACGAAGAACCATACGAACACTGTGATGTTTTATCTTGTTCGTGATAGAAGGCCCTTTGGTACTGCTATGGACTTTGGTCAGGTGTTTAACATGTATGATAATGAGCCCAGTACTGCTACTATCAAGAATGATCTTCGAGATCGTTATCAAGTTTTGAGGAAATTCACTTCAACAGTCACAGGTGGTCAATATGCTTCTAAGGAACAGGCGTTGGTTAGGAAATTTATGAAGATAAATAATTATGTAGTTTATAATCATCAAGAAGCTGCTAAGTATGAGAATCATACTGAGAATGCGTTATTATTGTATATGGCATGTACTCATGCCAGTAATCCAGTGTATGCTACTTTGAAGATCAAAATCTATTTCTATGATTCTGTTCAGAATTAATAAAAATTGAATTTTATTATACTTGATAATTCTTCATCAATTGTCCCCTCTAATACATTGTATAATACATGAGAAAATGCCCTAATTACATTGTTTATACTAATCACTCCCAAATTGTCTAAATATTTAATACATTGATACTTAAATACTTTTAAAAAACACCAAGTCTGAGGACGTAAATGAGTCCAAATTCTGCAGATTAGAAAACATTGGTGTATCCCCAACGCTTTCCTCAGGTTGTAGTTGAATTGGACTTGGAGTGTTATTACGTCGTGGTTCGTTGAGAACGGCCTCTGGTCGTGCTGGGTGATTTTGAAATATAGGGGATTTCTGACCGTCCAGATATACACGCCATTCTCTGCTTGAGCTGCAGTGATGGGTTCCCCGGTGCGAAAATCCATGATTGTGGCAGCCTATAGCTATGAAATAAGAGCATCCACAAGGGAGGTCAACTCGTCGTCTCCTCGTTGTTCGCTTGGCTATTTTGTGTTGCACCTTGATTGGAACCTGAGTAGAGTGGCCGTTGGATGGTGACGAAGATCGCATTATGTATAGCCCAATTTTTTAATGCGGAATTCTTTTCTTCGTCTAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCATAGGAAGATTGTTGGGATACCACCTTTAATTTGAACTGGCTTCCCATACTTTGTATTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGATAGTGGGGGTCGACGTCATCAATGACGTTATACCAAGCATCATTGCTGTATACCTTTGGGCTGAGATCAAGATGTCCACACAGATAATTGTGTGGTCCTAACGACCTAGCCCACATTGTTTTACCAGTACGACTATCACCTTCTATCACAATACTAATCGGTCTCAAAGGCCGCGCAGCGGCATTGACAACATTATTTGCAGACCATTCATGAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGAAGAAAAAGGACAAACAAATACCTCTAAAGGAGGTGCAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAAAACATAATCTTTTGGAGCTAACTCCTTAATTACATTAAGAGCCTCTGACTTACTGCCTGTGTTAAGTGCTGCGGCGTAAGCGTCATTGGCTGATTGTTGTCCCCCTCTTGCAGATCGTCCGTCGATCTGAAACTCTCCCCACTCGAGGGTGTCTCCGTCCTTATCGATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGACCAAGTCGAAGAATCTGTTATTCGTGCAGACGTATTTTCCCTCGAACTGGATAAGCACGTGGATATGAGGGCTCCCATCTTCGTGAAGCTCTCTGCAGATTTTGATGTATTTTTTGTTGGTTGGGGTTTCTAGGTTTTGAAGTTGGGAGAGTGCTTCCTCTTTAGTTAGAGAGCACTGTGGATAAGTGAGGAAATAATTTTTAGCTTGTATTTTAAAACGACGCGGGGGAGGCATTTTGAGCGTCGTTTTGTATTGGAGACAATCAACTCTATGAAATGAATTGGAGACTGGAGTACAATATATAGTGTGTCTCCAAATGGCATTCTCGTAATTCCTCATAGAAATTCAAAATTTGAATTGGTAAAGCGGCCATCCGTATAATATTA
Gene Information
|
NCBI Accession
|
NP_671448.1
|
|
Location
|
130-480 |
|
Gene Name
|
AV2 |
|
Protein Name
|
pre-coat protein |
|
Coding Region
|
ATGTGGGATCCACTTGTAAACGAGTTCCCTGAAACCGTACATGGTCTACGGTGCATGCTCGCTGTAAAATACTTGCAGTTAGTTGAGCAGACATACTCTCCGGATACGTTGGGGTACGATCTCGTGCGAGATTTAATTTTAGTTATCAGAGCTCGAGACTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAACTTCGACAGCCCGTATGTCAACCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGACGTGGGTGAATCGGCCCATGTATCGCAAGCCCAGACTATTCAGAACGTACAGAAGTCCTGA |
|
Protein Sequence
|
MWDPLVNEFPETVHGLRCMLAVKYLQLVEQTYSPDTLGYDLVRDLILVIRARDYVEASRRYSHFHSRIQGASPAELRQPVCQPCCCPHCPRHKQKEDVGESAHVSQAQTIQNVQKS |
|
NCBI Accession
|
NP_671449.1
|
|
Location
|
290-1063 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACTCCCGCATCCAAGGTGCGTCGCCGGCTGAACTTCGACAGCCCGTATGTCAACCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGACGTGGGTGAATCGGCCCATGTATCGCAAGCCCAGACTATTCAGAACGTACAGAAGTCCTGATGTGCCCAAAGGTTGTGAAGGCCCATGCAAAGTCCAATCGTATGAACAGAGGCACGACATATCCCATGTGGGTAAAGTATTATGTGTTAGTGATGTCACTCGTGGTAGTGGGCTTACCCATCGTGTTGGTAAGAGATTCTGTGTGAAGTCCGTTTATGTATTGGGTAAAATATGGATGGATGAAAATATCAAGACGAAGAACCATACGAACACTGTGATGTTTTATCTTGTTCGTGATAGAAGGCCCTTTGGTACTGCTATGGACTTTGGTCAGGTGTTTAACATGTATGATAATGAGCCCAGTACTGCTACTATCAAGAATGATCTTCGAGATCGTTATCAAGTTTTGAGGAAATTCACTTCAACAGTCACAGGTGGTCAATATGCTTCTAAGGAACAGGCGTTGGTTAGGAAATTTATGAAGATAAATAATTATGTAGTTTATAATCATCAAGAAGCTGCTAAGTATGAGAATCATACTGAGAATGCGTTATTATTGTATATGGCATGTACTCATGCCAGTAATCCAGTGTATGCTACTTTGAAGATCAAAATCTATTTCTATGATTCTGTTCAGAATTAA |
|
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDSPYVNRAAAPTVLVTNKRRTWVNRPMYRKPRLFRTYRSPDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGSGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPFGTAMDFGQVFNMYDNEPSTATIKNDLRDRYQVLRKFTSTVTGGQYASKEQALVRKFMKINNYVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIKIYFYDSVQN |
|
NCBI Accession
|
NP_671450.1
|
|
Location
|
1060-1464 |
|
Gene Name
|
AC3 |
|
Protein Name
|
replication enhancer protein |
|
Coding Region
|
ATGGATTTTCGCACCGGGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTATATCTGGACGGTCAGAAATCCCCTATATTTCAAAATCACCCAGCACGACCAGAGGCCGTTCTCAACGAACCACGACGTAATAACACTCCAAGTCCAATTCAACTACAACCTGAGGAAAGCGTTGGGGATACACCAATGTTTTCTAATCTGCAGAATTTGGACTCATTTACGTCCTCAGACTTGGTGTTTTTTAAAAGTATTTAAGTATCAATGTATTAAATATTTAGACAATTTGGGAGTGATTAGTATAAACAATGTAATTAGGGCATTTTCTCATGTATTATACAATGTATTAGAGGGGACAATTGATGAAGAATTATCAAGTATAATAAAATTCAATTTTTATTAA |
|
Protein Sequence
|
MDFRTGEPITAAQAENGVYIWTVRNPLYFKITQHDQRPFSTNHDVITLQVQFNYNLRKALGIHQCFLICRIWTHLRPQTWCFLKVFKYQCIKYLDNLGVISINNVIRAFSHVLYNVLEGTIDEELSSIIKFNFY |
|
NCBI Accession
|
NP_671451.1
|
|
Location
|
1205-1609 |
|
Gene Name
|
AC2 |
|
Protein Name
|
transcriptional activator protein |
|
Coding Region
|
ATGCGATCTTCGTCACCATCCAACGGCCACTCTACTCAGGTTCCAATCAAGGTGCAACACAAAATAGCCAAGCGAACAACGAGGAGACGACGAGTTGACCTCCCTTGTGGATGCTCTTATTTCATAGCTATAGGCTGCCACAATCATGGATTTTCGCACCGGGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTATATCTGGACGGTCAGAAATCCCCTATATTTCAAAATCACCCAGCACGACCAGAGGCCGTTCTCAACGAACCACGACGTAATAACACTCCAAGTCCAATTCAACTACAACCTGAGGAAAGCGTTGGGGATACACCAATGTTTTCTAATCTGCAGAATTTGGACTCATTTACGTCCTCAGACTTGGTGTTTTTTAAAAGTATTTAA |
|
Protein Sequence
|
MRSSSPSNGHSTQVPIKVQHKIAKRTTRRRRVDLPCGCSYFIAIGCHNHGFSHRGTHHCSSSREWRVYLDGQKSPIFQNHPARPEAVLNEPRRNNTPSPIQLQPEESVGDTPMFSNLQNLDSFTSSDLVFFKSI |
|
NCBI Accession
|
NP_671452.1
|
|
Location
|
1512-2597 |
|
Gene Name
|
AC1 |
|
Protein Name
|
rep protein |
|
Coding Region
|
ATGCCTCCCCCGCGTCGTTTTAAAATACAAGCTAAAAATTATTTCCTCACTTATCCACAGTGCTCTCTAACTAAAGAGGAAGCACTCTCCCAACTTCAAAACCTAGAAACCCCAACCAACAAAAAATACATCAAAATCTGCAGAGAGCTTCACGAAGATGGGAGCCCTCATATCCACGTGCTTATCCAGTTCGAGGGAAAATACGTCTGCACGAATAACAGATTCTTCGACTTGGTCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGATAAGGACGGAGACACCCTCGAGTGGGGAGAGTTTCAGATCGACGGACGATCTGCAAGAGGGGGACAACAATCAGCCAATGACGCTTACGCCGCAGCACTTAACACAGGCAGTAAGTCAGAGGCTCTTAATGTAATTAAGGAGTTAGCTCCAAAAGATTATGTTTTACAATTTCATAATTTAAATGCTAATTTAGATAGGATTTTTGCACCTCCTTTAGAGGTATTTGTTTGTCCTTTTTCTTCTTCTTCTTTCGATCAAGTTCCAGAAGAACTTCATGAATGGTCTGCAAATAATGTTGTCAATGCCGCTGCGCGGCCTTTGAGACCGATTAGTATTGTGATAGAAGGTGATAGTCGTACTGGTAAAACAATGTGGGCTAGGTCGTTAGGACCACACAATTATCTGTGTGGACATCTTGATCTCAGCCCAAAGGTATACAGCAATGATGCTTGGTATAACGTCATTGATGACGTCGACCCCCACTATCTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAATCCAATACAAAGTATGGGAAGCCAGTTCAAATTAAAGGTGGTATCCCAACAATCTTCCTATGCAATCCAGGACCCAATTCCAGCTATAAAGAGTTCTTAGACGAAGAAAAGAATTCCGCATTAAAAAATTGGGCTATACATAATGCGATCTTCGTCACCATCCAACGGCCACTCTACTCAGGTTCCAATCAAGGTGCAACACAAAATAGCCAAGCGAACAACGAGGAGACGACGAGTTGA |
|
Protein Sequence
|
MPPPRRFKIQAKNYFLTYPQCSLTKEEALSQLQNLETPTNKKYIKICRELHEDGSPHIHVLIQFEGKYVCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQSANDAYAAALNTGSKSEALNVIKELAPKDYVLQFHNLNANLDRIFAPPLEVFVCPFSSSSFDQVPEELHEWSANNVVNAAARPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWAIHNAIFVTIQRPLYSGSNQGATQNSQANNEETTS |
|
NCBI Accession
|
NP_671453.1
|
|
Location
|
2150-2440 |
|
Gene Name
|
AC4 |
|
Protein Name
|
transcriptional regulator protein |
|
Coding Region
|
ATGGGAGCCCTCATATCCACGTGCTTATCCAGTTCGAGGGAAAATACGTCTGCACGAATAACAGATTCTTCGACTTGGTCTCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGATAAGGACGGAGACACCCTCGAGTGGGGAGAGTTTCAGATCGACGGACGATCTGCAAGAGGGGGACAACAATCAGCCAATGACGCTTACGCCGCAGCACTTAACACAGGCAGTAAGTCAGAGGCTCTTAATGTAA |
|
Protein Sequence
|
MGALISTCLSSSRENTSARITDSSTWSPQPGQHISIRTFRELNPAPTSSPISIRTETPSSGESFRSTDDLQEGDNNQPMTLTPQHLTQAVSQRLLM |