Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000844565.1 |
Isolate | USA: California |
Release date | 2015/2/12 |
Submitter | Brown,J.K., Idris,A.M., Alteri,C., Stenger,D.C. |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | NP_808801.1 |
---|---|
Location | 203-958 |
Protein Name | AV1 coat protein |
Coding Region | ATGCCTAAGCGTGATGCCCCATCGCGTTTAATGGCGGGGACCTCGAAAGTCTCCCGCTCTGCTAACTATTCGCCTCGTGGAGGTATGGGCCCTAAATTCAATAAGGCCGCTGCGTGGGTGAACAGGCCCATGTATAGGAAGCCCAGGATCTATCGGACGTTCAGAAGTCCCGATGTTCCCAAGGGGTGTGAAGGACCTTGTAAGGTCCAGTCTTACGAGCAGCGGCATGATGTCTCTCATGTTGGCAAGGTAATGTGTATATCTGACGTGACCCGTGGTAACGGTATTACACACCGTGTCGGGAAACGTTTTTGTGTCAAGTCTGTATATATATTAGGGAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCACACTAACAGCGTTATGTTTTGGTTGGTACGAGACCGTAGACCGTATGGGACTCCTATGGAGTTCGGCCAAGTGTTCAACATGTTCGACAATGAGCCCAGTACGGCGACTGTTAAGAACGATCTCCGTGATCGTTTTCAAGTTATGCACAAGTTCTATGCTAAGGTCACTGGTGGTCAATATGCTAGCAACGAGCAAGCGTTGGTTAAAAGATTTTGGAAGGTCAACAACCATGTCGTCTATAACCACCAGGAAGCTGGGAAGTACGAGAATCATACAGAGAATGCTTTGTTATTGTATATGGCATGTACTCATGCCTCTAACCCCGTGTATGCGACATTGAAAATACGGATCTATTTTTATGATTCAATAACAAATTAA |
Protein Sequence | MPKRDAPSRLMAGTSKVSRSANYSPRGGMGPKFNKAAAWVNRPMYRKPRIYRTFRSPDVPKGCEGPCKVQSYEQRHDVSHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMEFGQVFNMFDNEPSTATVKNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
NCBI Accession | NP_808802.1 |
---|---|
Location | 955-1353 |
Protein Name | AC3 |
Coding Region | ATGGATTTACGCACCGGGGAGAGCATCACTGTGTATCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTTCCAAATCCCCTGTATTTCAAGATAACAGAAGTGGAGGATACCGTCCACTCTCACATGCGGATATATCATATCCAAATCCGGTTCAACCACAACCTGAGGAGAGCACTAAATCTTCACAAAGCGTTCCTGAACTACCAAGTCTGGACGGAGTCGATTCGAGCTTCTGGGACGACTTATTTAAATAGATTTAAACATTTAGTGCTATTGTACTTAGATAGGTTAGGAGTTATTGGTCTCAATAACGTTGTTAGAGCTGTTTCCTGGGCAACTGATCGTTCTTATGTATATTATGTACACGAGAAGCATGAAATAAAATTTAATCTTTATTAA |
Protein Sequence | MDLRTGESITVYQAENSVFIWEVPNPLYFKITEVEDTVHSHMRIYHIQIRFNHNLRRALNLHKAFLNYQVWTESIRASGTTYLNRFKHLVLLYLDRLGVIGLNNVVRAVSWATDRSYVYYVHEKHEIKFNLY |
NCBI Accession | NP_808803.1 |
---|---|
Location | 1100-1489 |
Protein Name | AC2 |
Coding Region | ATGCTAAATTCATCTTCCTCGAGAGCCCCCTCTATCAAAGCACAGCACAAGATTGCTAAAAGAAGGGCTGTACGTCGACGACGAATCGATCTAAACTGCGGCTGTTCCATATTTTTCCATATCAACTGCACGAACCATGGATTTACGCACCGGGGAGAGCATCACTGTGTATCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTTCCAAATCCCCTGTATTTCAAGATAACAGAAGTGGAGGATACCGTCCACTCTCACATGCGGATATATCATATCCAAATCCGGTTCAACCACAACCTGAGGAGAGCACTAAATCTTCACAAAGCGTTCCTGAACTACCAAGTCTGGACGGAGTCGATTCGAGCTTCTGGGACGACTTATTTAAATAG |
Protein Sequence | MLNSSSSRAPSIKAQHKIAKRRAVRRRRIDLNCGCSIFFHINCTNHGFTHRGEHHCVSGREFRFYLGGSKSPVFQDNRSGGYRPLSHADISYPNPVQPQPEESTKSSQSVPELPSLDGVDSSFWDDLFK |
NCBI Accession | NP_808804.1 |
---|---|
Location | 1431-2480 |
Protein Name | Rep associated protein |
Coding Region | ATGCCACGGAACCCTAATTCATTTCGTTTTACAGCCAGGAACATTTTCTTAACATATCCTCAGTGCGACATCCCCAAAGATGAAGCTATTCAGATGCTTGAGCATCTGCAATGGTCGGTCGTCAAACCAACATATATCAGAGTCGCACGAGAGGAACATTCCGACGGGTTCCCGCACTTACACTGCCTCATACAGTTATCCGGTAAGACTAACATCAAGAATGCTAGATTTTTCGACCTTACTCACCCCAGAAGGGCTGCCTGTTTTCACCCGAACATTCAGGCAGCCAAAGACACCAACGCCGTCAAGAATTACATCACCAAAGAAGGTGATTATTGTGAGTCCGGGAAATATAAAGTGTCTGGGGGTACAAAATCTAGCAAAGACGACGTATATCACAACGCCGTCAATGCAGGAAGTGCGGGAGAGGCTCTCGACATTATAAAGGCCGGAGATCCTAAAACATTTCTTGTTAGTTATCACAATTTGAAGGCTAACATCGAGCGCCTCTTTCATCAGCCTCCTGAACCATGGGTCCCTCCGTTTCCACTCTCGTCGTTCACACTAGTTCCAGAAGAGTTACAGGAATGGGCTGATGATTATTTTAATAAGGGTTCCGCTGCGCGGCCATATAGAAATATAAGTATAATAGTAGAGGGTGATTCTAGAACCGGCAAGACAATGTGGGCTCGTGCCCTAGGGCGTCATAACTATATCAGTGGGCACCTTGATTTCAATTCTAGGGTTTTCTCGAACGATGCCGAGTATAACGTCATCGATGACGTCGCTCCGCAATACCTAAAGCTAAAGCATTGGAAAGAATTGATTGGGGCCCAGAGAGACTGGCAATCCAACTGTAAATATGGAAAGCCGGTTCAAATTAAAGGTGGGATCCCGTCAATCGTGCTGTGCAATCCAGGCGAGGGGGCCAGCTATAAAGATTTCCTGGACAAAGCGGAAAATACCGCACTAAAGGCCTGGACATTAAAAAATGCTAAATTCATCTTCCTCGAGAGCCCCCTCTATCAAAGCACAGCACAAGATTGCTAA |
Protein Sequence | MPRNPNSFRFTARNIFLTYPQCDIPKDEAIQMLEHLQWSVVKPTYIRVAREEHSDGFPHLHCLIQLSGKTNIKNARFFDLTHPRRAACFHPNIQAAKDTNAVKNYITKEGDYCESGKYKVSGGTKSSKDDVYHNAVNAGSAGEALDIIKAGDPKTFLVSYHNLKANIERLFHQPPEPWVPPFPLSSFTLVPEELQEWADDYFNKGSAARPYRNISIIVEGDSRTGKTMWARALGRHNYISGHLDFNSRVFSNDAEYNVIDDVAPQYLKLKHWKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKAENTALKAWTLKNAKFIFLESPLYQSTAQDC |
NCBI Accession | NP_808805.1 |
---|---|
Location | 523-1287 |
Protein Name | BV1 |
Coding Region | ATGTATTCGTCTAGACGCGGTCGACCCAATGTTCAACGAGTAAGTCATCTACGGCGTACTTATTTCAAACGTCCATATTATCAGACACGTGGTGATGAGAAGCGTCGACCGACTGCTGTTAATAAGACTCATGACGACACAAAGATGTCACTACAACGTCTACACGAGGATCAGTTTGGTCCAGATTTCGTTTTAGGTCATAATACAGCTTTGTCCACGTTTATCACCTACCCAAGTATTGTTAAGACTGAACCCAATCGGACGCGGTCGTATATCAAGTTGAAACGACTGCGTTTTAAAGGCACATTGAAAATTGAACGTGGACATGGTGGTACGGTGATGGAAGATCCAACGTCTAAGATTGAAGGGGTTTTCTCTATGGTTGTTGTGGTTGATCGTAAACCACATGTAAACCCTTCTGGACGACTACATACATTCGACGAACTATTTGGCGCGCGGATCCATAGTCACGGTAATCTAGCTATCGTTCCCGCGCTCAAGGATCGTTTTTACATTAAACATGTAATGAAACGCGTTTTATCGGTCGAGAAGGATACATTAATGGTTGATCTACAGGGATCGACAACGTTTTCCAACAAGCGTTTCAATTGCTGGTCTGCGTTTAATGATCTTGAACGGGATTCATGTAACGGGGTTTACGCAAACATAAGCAAGAACGCCATTCTAGTTTATTATTGTTGGATGTCGGATACGCCTTCTAAGGCATCCACATATGTATCATTTGACCTTGAATATGTTGGATGA |
Protein Sequence | MYSSRRGRPNVQRVSHLRRTYFKRPYYQTRGDEKRRPTAVNKTHDDTKMSLQRLHEDQFGPDFVLGHNTALSTFITYPSIVKTEPNRTRSYIKLKRLRFKGTLKIERGHGGTVMEDPTSKIEGVFSMVVVVDRKPHVNPSGRLHTFDELFGARIHSHGNLAIVPALKDRFYIKHVMKRVLSVEKDTLMVDLQGSTTFSNKRFNCWSAFNDLERDSCNGVYANISKNAILVYYCWMSDTPSKASTYVSFDLEYVG |
NCBI Accession | NP_808806.1 |
---|---|
Location | 1467-2348 |
Protein Name | BC1 |
Coding Region | ATGGGTTCACAATTAGTTCCTCCTCCAAGCGCATTTAATTATATAGAATCTCATCGGGATGAATTTCAACTGTCTCACGACCTAACAGAAATTGTTCTGCAATTTCCGTCGACTGCATCTCAATTAACTGCGCGCCTGAGTCGTAGTTGTATGAAGATCGACCATTGTGTCATAGAATACAGACAGCAGGTACCTATAAACGCCTCCGGTACCGTAATAGTGGAGATCCACGACAAACGCATGACGGACAATGAGTCGCTGCAAGCATCCTGGACGTTTCCGATTAGATGCAACATAGATCTCCACTATTTCTCATCATCATTCTTCTCTCTCAAAGACCCAATTCCATGGAAATTATACTATAGAGTGTCAGAATCGAATGTTCATCAGATGACGCATTTCGCTAAATTCAAGGGCAAGCTAAAGCTATCGTCGGCAAAGCACTCCGTCGACATCCCATTCCGGGCACCAACCGTAAAGATACTTACCAAACAATTTAGCGAAAAGGATATAGATTTCTGGCACGTTGGATACGGCAAATGGGAGAGAAGACTGGTCAAATCCGCATCACTTTCCAGATATGGGCTTAGAGGCCCAATAGAAATTAATCCTGGTGAATCTTGGGCCACTAGAAGTATGATTGGTCCAGGTCCTACAAATGCGGATTTAGAGATGGACGATGAGATGCTTCCATACAGGGAACTAAACAGGTTAGGGACGACTGTATTAGACCCCGGGGAATCAGCATCCATCGTCGGAATACAACGGTCGCAATCTACCATAACCATGTCGATGTCGCAGCTGAACGAGTTAGTTAAGTCGACTGTTCATGAATGCATTAAGACCAGTTGTATTCCGAGTACTCCAAAATCTCTAAATTAG |
Protein Sequence | MGSQLVPPPSAFNYIESHRDEFQLSHDLTEIVLQFPSTASQLTARLSRSCMKIDHCVIEYRQQVPINASGTVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYFSSSFFSLKDPIPWKLYYRVSESNVHQMTHFAKFKGKLKLSSAKHSVDIPFRAPTVKILTKQFSEKDIDFWHVGYGKWERRLVKSASLSRYGLRGPIEINPGESWATRSMIGPGPTNADLEMDDEMLPYRELNRLGTTVLDPGESASIVGIQRSQSTITMSMSQLNELVKSTVHECIKTSCIPSTPKSLN |
1 |
Maliano MR, et al. Plant Dis. 2021 Oct;105(10):3162-3170. doi: 10.1094/PDIS-08-20-1759-RE. Epub 2021 Nov 7. PMID: 33591835 |
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2 |
Sufrin-Ringwald T, et al. Phytopathology. 2011 Feb;101(2):281-9. doi: 10.1094/PHYTO-06-10-0159. PMID: 21219130 |
3 |
Chen YK, et al. Plant Dis. 2022 May 12. doi: 10.1094/PDIS-12-21-2827-PDN. Online ahead of print. PMID: 35549322 |
4 |
Al-Musa A, et al. Virus Genes. 2011 Aug;43(1):79-89. doi: 10.1007/s11262-011-0594-8. Epub 2011 Mar 12. PMID: 21399920 |