Squash leaf curl Yunnan virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000858265.1 |
| Isolate |
China:Yunnan |
| Release date |
2015/2/13 |
| Submitter |
Xie,Y., Zhou,X.P., Zhou,X. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTTTAAAGTGGTTCTTTGATGTGATGTTTCAGCCTATCAAATCGCTCCCTCACAGCTTAATTATTTATGGTCCCCTATTTAAGACTTAGTCCCCAAGTTTCCCCGAAATGCAAAATGTGGGATCCACTCCTAAACGAATTTCCAGAAAACGTCCACGGTTTTCGTTGTATGTTAGCGGTGAAGTACCTGCAAGAGATCGAAAAGACGTATTCCCCTGATACCCTAGGATTTGATCTCATTCGTGATCTTACCGGTGTAATTCGTGCGAAGAATTATGTCGAAGCGTCCAGCAGATATTCTCATTTCTACGCCCGTCTCGAAAGTACGTCGCCGTCTGAACTTCGACAGCCCATACAACAGCCGTGCTGCTGTCCCCACTGTCCGCGTCACAAAAGGGCAGATATGGAAGAACCGACCTGCATACAGAAAGCCCAAGTTCTACAGAATGTATAGAAGCCCTGATGTCCCTAAGGGATGTGAGGGTCCATGTAAGGTCCAATCTTTCGATGCGAAGAACGACATTGGACATATGGGCAAGGTAATCTGTTTGTCTGACGTTACCCGTGGTATTGGGCTTACTCATCGAGTTGACAAGCGATTCTGTGTGAAGTCACTTTATTTTGTCGGGAAGATCTGGATGGATGAAAATATTAAGGTTAAGAATCACACTAACACCGTTTTATTCTGGATAGTTAGGGATCGGCGTCCTACTGGAACGCCTTATGATTTTCAGCAGGTGTTTAATGTATATGATAATGAACCCAGCACTGCTACTGTGAAGAACGATCAGCGTGATCGTTTCCAGGTTATAAGGAGGTTCCAGGCTACTGTTACTGGTGGACAATATGCAGCTAAGGAGCAGGCGATTATTAGAAAGTTTTATCGTGTTAATAATTATGTAGTTTACAATCACCAGGAAGCTGGGAAGTACGAGAACCATACTGAAAATGCTCTATTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACTTTGAAAGTCAGGAGTTATTTCTATGACTCAGTGACGAATTAATAAATAGTAAATATATATCATGATCTTCAATTACATCAATTGTTCCTTCTAATACATTGACATTGTTTATAATAATCACGCCTAATTTATCTAAATATTTATTACACTGATATTTAAATACTACTAAGAAGCGCGAGGTCTGAGGATGTAAATGAGTCCAGATTTTGCAGACTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTTGTTGAACTGTATTTGTAACGTGATTATGTCGTGGTTCCTCCAGAATGGGCTCTCTGTGTGCCTGGTTATCTTGAAATATAGGGGATTTTTTACCGTCCAGATATATACGCCACTCTCTGATTGAGTTGCAGTGAGTAGTTCCCCGGTGCGTGAATCCATTATTGTGACAGCCTATGGCGACGAAGTACGAACATCCGCAACGTAGATCAACTCTCCGTCGTCTGATTGTCCTCTTCGCTATTCGGTGTTGCACCTTGATAGGTATCTGAGTAGAGTGGGCCTTCGAGGGTGACGAAGATCGCATTCTTTATGGCCCAGTTTCTGAGTGCGGAGTTCTTTTCTTCTTCCAAGTACTCTTTATAGCTGGAGTTTGGTCCAGGATTGCAGAGGAATATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTATTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTTAGATAGTGCGGATCGACGTCATCAATGACGTTGTACCAAGCATCATTATTATACACTTTTGGACTTAAATCTAAATGGCCACATAGATAATTATGTGGTCCCAATGACCTAGCCCACATCGTCTTCCCTGTTCTACTATCACCCTCAATTACTATACTTATTGGCCTAAATGGCCGCGCAGCTTCACTGAGAACATTATTACAAGCCCATTCTTCAAGTTCTCCGGGAACTTGATTAAAAGAAGAAGAAGAAAAGGGAGAAATATATTCCTCTATAGGAGGAGTAAAAATCCGATCTAAATTACATTTTATATTGTGATATTGGAAAATATAATCTTTTGGAAGTTTTTCCCTCATTATTGCTAACGCCGCTTCAGCCGAACCTGCATTGAGGGCCTCTGCTGCTGCATCATTAGCTGTCTGTTGACCTCCTCTAGCAGATCGTCCATCGATCTGAAACTGACCCCAGTCGATGTAATCACCGTCCTTCTCGATGTAAGATTTGACATCGGAGCTGGATTTAGCTCCCTGGAAGTTTGGATGGTATTGAGTTGAGGTATTAGGGTGAGTGACATCGAAATGTCTGGGGTTTCTGAACTGGCATTTACCTTTGAATTGGATGAGCGCGTGGATATGCATAGACCCATCTTGGTGTTTTTCTTGTGATACTCTGATAAATAATTTGTCAGATGGACATGAAATGTTTTGAAGGAGTTCGAGCATCTGCTCTTTCGGTATTGGGCATTTTGGGAAAGTGAGAAAGATATTTTTTGCCTTAACTTGGAATTGGTTTGTACGTGGCATATTGAATTGGGTGCTCTACAAACCTCATAGGAATGGGGTGCTTTGGGTGCCTATTTATATCGAGCTCCCAAATGGCAATTTTGTAATTTTGAAAAGTAATTCAAAACCCTAACGCTCCCAAAAGCGGACATCCGTATAATATT
Gene Information
|
NCBI Accession
|
NP_808846.1
|
|
Location
|
135-473 |
|
Gene Name
|
AV2 |
|
Protein Name
|
AV2 protein |
|
Coding Region
|
ATGTGGGATCCACTCCTAAACGAATTTCCAGAAAACGTCCACGGTTTTCGTTGTATGTTAGCGGTGAAGTACCTGCAAGAGATCGAAAAGACGTATTCCCCTGATACCCTAGGATTTGATCTCATTCGTGATCTTACCGGTGTAATTCGTGCGAAGAATTATGTCGAAGCGTCCAGCAGATATTCTCATTTCTACGCCCGTCTCGAAAGTACGTCGCCGTCTGAACTTCGACAGCCCATACAACAGCCGTGCTGCTGTCCCCACTGTCCGCGTCACAAAAGGGCAGATATGGAAGAACCGACCTGCATACAGAAAGCCCAAGTTCTACAGAATGTATAG |
|
Protein Sequence
|
MWDPLLNEFPENVHGFRCMLAVKYLQEIEKTYSPDTLGFDLIRDLTGVIRAKNYVEASSRYSHFYARLESTSPSELRQPIQQPCCCPHCPRHKRADMEEPTCIQKAQVLQNV |
|
NCBI Accession
|
NP_808847.1
|
|
Location
|
295-1065 |
|
Gene Name
|
AV1 |
|
Protein Name
|
AV1 protein |
|
Coding Region
|
ATGTCGAAGCGTCCAGCAGATATTCTCATTTCTACGCCCGTCTCGAAAGTACGTCGCCGTCTGAACTTCGACAGCCCATACAACAGCCGTGCTGCTGTCCCCACTGTCCGCGTCACAAAAGGGCAGATATGGAAGAACCGACCTGCATACAGAAAGCCCAAGTTCTACAGAATGTATAGAAGCCCTGATGTCCCTAAGGGATGTGAGGGTCCATGTAAGGTCCAATCTTTCGATGCGAAGAACGACATTGGACATATGGGCAAGGTAATCTGTTTGTCTGACGTTACCCGTGGTATTGGGCTTACTCATCGAGTTGACAAGCGATTCTGTGTGAAGTCACTTTATTTTGTCGGGAAGATCTGGATGGATGAAAATATTAAGGTTAAGAATCACACTAACACCGTTTTATTCTGGATAGTTAGGGATCGGCGTCCTACTGGAACGCCTTATGATTTTCAGCAGGTGTTTAATGTATATGATAATGAACCCAGCACTGCTACTGTGAAGAACGATCAGCGTGATCGTTTCCAGGTTATAAGGAGGTTCCAGGCTACTGTTACTGGTGGACAATATGCAGCTAAGGAGCAGGCGATTATTAGAAAGTTTTATCGTGTTAATAATTATGTAGTTTACAATCACCAGGAAGCTGGGAAGTACGAGAACCATACTGAAAATGCTCTATTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACTTTGAAAGTCAGGAGTTATTTCTATGACTCAGTGACGAATTAA |
|
Protein Sequence
|
MSKRPADILISTPVSKVRRRLNFDSPYNSRAAVPTVRVTKGQIWKNRPAYRKPKFYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHRVDKRFCVKSLYFVGKIWMDENIKVKNHTNTVLFWIVRDRRPTGTPYDFQQVFNVYDNEPSTATVKNDQRDRFQVIRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKVRSYFYDSVTN |
|
NCBI Accession
|
NP_808848.1
|
|
Location
|
1031-1438 |
|
Gene Name
|
AC3 |
|
Protein Name
|
AC3 protein |
|
Coding Region
|
ATGGATTCACGCACCGGGGAACTACTCACTGCAACTCAATCAGAGAGTGGCGTATATATCTGGACGGTAAAAAATCCCCTATATTTCAAGATAACCAGGCACACAGAGAGCCCATTCTGGAGGAACCACGACATAATCACGTTACAAATACAGTTCAACAACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAGTCTGCAAAATCTGGACTCATTTACATCCTCAGACCTCGCGCTTCTTAGTAGTATTTAAATATCAGTGTAATAAATATTTAGATAAATTAGGCGTGATTATTATAAACAATGTCAATGTATTAGAAGGAACAATTGATGTAATTGAAGATCATGATATATATTTACTATTTATTAATTCGTCACTGAGTCATAGAAATAACTCCTGA |
|
Protein Sequence
|
MDSRTGELLTATQSESGVYIWTVKNPLYFKITRHTESPFWRNHDIITLQIQFNNNLRKALGIHKCFLVCKIWTHLHPQTSRFLVVFKYQCNKYLDKLGVIIINNVNVLEGTIDVIEDHDIYLLFINSSLSHRNNS |
|
NCBI Accession
|
NP_808849.1
|
|
Location
|
1179-1583 |
|
Gene Name
|
AC2 |
|
Protein Name
|
AC2 protein |
|
Coding Region
|
ATGCGATCTTCGTCACCCTCGAAGGCCCACTCTACTCAGATACCTATCAAGGTGCAACACCGAATAGCGAAGAGGACAATCAGACGACGGAGAGTTGATCTACGTTGCGGATGTTCGTACTTCGTCGCCATAGGCTGTCACAATAATGGATTCACGCACCGGGGAACTACTCACTGCAACTCAATCAGAGAGTGGCGTATATATCTGGACGGTAAAAAATCCCCTATATTTCAAGATAACCAGGCACACAGAGAGCCCATTCTGGAGGAACCACGACATAATCACGTTACAAATACAGTTCAACAACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAGTCTGCAAAATCTGGACTCATTTACATCCTCAGACCTCGCGCTTCTTAGTAGTATTTAA |
|
Protein Sequence
|
MRSSSPSKAHSTQIPIKVQHRIAKRTIRRRRVDLRCGCSYFVAIGCHNNGFTHRGTTHCNSIREWRIYLDGKKSPIFQDNQAHREPILEEPRHNHVTNTVQQQPEESVGDTQMFSSLQNLDSFTSSDLALLSSI |
|
NCBI Accession
|
NP_808850.1
|
|
Location
|
1486-2571 |
|
Gene Name
|
AC1 |
|
Protein Name
|
AC1 protein |
|
Coding Region
|
ATGCCACGTACAAACCAATTCCAAGTTAAGGCAAAAAATATCTTTCTCACTTTCCCAAAATGCCCAATACCGAAAGAGCAGATGCTCGAACTCCTTCAAAACATTTCATGTCCATCTGACAAATTATTTATCAGAGTATCACAAGAAAAACACCAAGATGGGTCTATGCATATCCACGCGCTCATCCAATTCAAAGGTAAATGCCAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAATACCTCAACTCAATACCATCCAAACTTCCAGGGAGCTAAATCCAGCTCCGATGTCAAATCTTACATCGAGAAGGACGGTGATTACATCGACTGGGGTCAGTTTCAGATCGATGGACGATCTGCTAGAGGAGGTCAACAGACAGCTAATGATGCAGCAGCAGAGGCCCTCAATGCAGGTTCGGCTGAAGCGGCGTTAGCAATAATGAGGGAAAAACTTCCAAAAGATTATATTTTCCAATATCACAATATAAAATGTAATTTAGATCGGATTTTTACTCCTCCTATAGAGGAATATATTTCTCCCTTTTCTTCTTCTTCTTTTAATCAAGTTCCCGGAGAACTTGAAGAATGGGCTTGTAATAATGTTCTCAGTGAAGCTGCGCGGCCATTTAGGCCAATAAGTATAGTAATTGAGGGTGATAGTAGAACAGGGAAGACGATGTGGGCTAGGTCATTGGGACCACATAATTATCTATGTGGCCATTTAGATTTAAGTCCAAAAGTGTATAATAATGATGCTTGGTACAACGTCATTGATGACGTCGATCCGCACTATCTAAAACACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACAAAATACGGGAAGCCAGTTCAAATTAAAGGTGGAATTCCCACTATATTCCTCTGCAATCCTGGACCAAACTCCAGCTATAAAGAGTACTTGGAAGAAGAAAAGAACTCCGCACTCAGAAACTGGGCCATAAAGAATGCGATCTTCGTCACCCTCGAAGGCCCACTCTACTCAGATACCTATCAAGGTGCAACACCGAATAGCGAAGAGGACAATCAGACGACGGAGAGTTGA |
|
Protein Sequence
|
MPRTNQFQVKAKNIFLTFPKCPIPKEQMLELLQNISCPSDKLFIRVSQEKHQDGSMHIHALIQFKGKCQFRNPRHFDVTHPNTSTQYHPNFQGAKSSSDVKSYIEKDGDYIDWGQFQIDGRSARGGQQTANDAAAEALNAGSAEAALAIMREKLPKDYIFQYHNIKCNLDRIFTPPIEEYISPFSSSSFNQVPGELEEWACNNVLSEAARPFRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLEEEKNSALRNWAIKNAIFVTLEGPLYSDTYQGATPNSEEDNQTTES |
|
NCBI Accession
|
NP_808851.1
|
|
Location
|
2130-2414 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGTCTATGCATATCCACGCGCTCATCCAATTCAAAGGTAAATGCCAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAATACCTCAACTCAATACCATCCAAACTTCCAGGGAGCTAAATCCAGCTCCGATGTCAAATCTTACATCGAGAAGGACGGTGATTACATCGACTGGGGTCAGTTTCAGATCGATGGACGATCTGCTAGAGGAGGTCAACAGACAGCTAATGATGCAGCAGCAGAGGCCCTCAATGCAGGTTCGGCTGAAGCGGCGTTAG |
|
Protein Sequence
|
MGLCISTRSSNSKVNASSETPDISMSLTLIPQLNTIQTSRELNPAPMSNLTSRRTVITSTGVSFRSMDDLLEEVNRQLMMQQQRPSMQVRLKRR |