Squash leaf curl Yunnan virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000858265.1
Isolate China:Yunnan
Release date 2015/2/13
Submitter Xie,Y., Zhou,X.P., Zhou,X.
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_004651
ACCGGATGGCCGCGATTTTTTTTTAAAGTGGTTCTTTGATGTGATGTTTCAGCCTATCAAATCGCTCCCTCACAGCTTAATTATTTATGGTCCCCTATTTAAGACTTAGTCCCCAAGTTTCCCCGAAATGCAAAATGTGGGATCCACTCCTAAACGAATTTCCAGAAAACGTCCACGGTTTTCGTTGTATGTTAGCGGTGAAGTACCTGCAAGAGATCGAAAAGACGTATTCCCCTGATACCCTAGGATTTGATCTCATTCGTGATCTTACCGGTGTAATTCGTGCGAAGAATTATGTCGAAGCGTCCAGCAGATATTCTCATTTCTACGCCCGTCTCGAAAGTACGTCGCCGTCTGAACTTCGACAGCCCATACAACAGCCGTGCTGCTGTCCCCACTGTCCGCGTCACAAAAGGGCAGATATGGAAGAACCGACCTGCATACAGAAAGCCCAAGTTCTACAGAATGTATAGAAGCCCTGATGTCCCTAAGGGATGTGAGGGTCCATGTAAGGTCCAATCTTTCGATGCGAAGAACGACATTGGACATATGGGCAAGGTAATCTGTTTGTCTGACGTTACCCGTGGTATTGGGCTTACTCATCGAGTTGACAAGCGATTCTGTGTGAAGTCACTTTATTTTGTCGGGAAGATCTGGATGGATGAAAATATTAAGGTTAAGAATCACACTAACACCGTTTTATTCTGGATAGTTAGGGATCGGCGTCCTACTGGAACGCCTTATGATTTTCAGCAGGTGTTTAATGTATATGATAATGAACCCAGCACTGCTACTGTGAAGAACGATCAGCGTGATCGTTTCCAGGTTATAAGGAGGTTCCAGGCTACTGTTACTGGTGGACAATATGCAGCTAAGGAGCAGGCGATTATTAGAAAGTTTTATCGTGTTAATAATTATGTAGTTTACAATCACCAGGAAGCTGGGAAGTACGAGAACCATACTGAAAATGCTCTATTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACTTTGAAAGTCAGGAGTTATTTCTATGACTCAGTGACGAATTAATAAATAGTAAATATATATCATGATCTTCAATTACATCAATTGTTCCTTCTAATACATTGACATTGTTTATAATAATCACGCCTAATTTATCTAAATATTTATTACACTGATATTTAAATACTACTAAGAAGCGCGAGGTCTGAGGATGTAAATGAGTCCAGATTTTGCAGACTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTTGTTGAACTGTATTTGTAACGTGATTATGTCGTGGTTCCTCCAGAATGGGCTCTCTGTGTGCCTGGTTATCTTGAAATATAGGGGATTTTTTACCGTCCAGATATATACGCCACTCTCTGATTGAGTTGCAGTGAGTAGTTCCCCGGTGCGTGAATCCATTATTGTGACAGCCTATGGCGACGAAGTACGAACATCCGCAACGTAGATCAACTCTCCGTCGTCTGATTGTCCTCTTCGCTATTCGGTGTTGCACCTTGATAGGTATCTGAGTAGAGTGGGCCTTCGAGGGTGACGAAGATCGCATTCTTTATGGCCCAGTTTCTGAGTGCGGAGTTCTTTTCTTCTTCCAAGTACTCTTTATAGCTGGAGTTTGGTCCAGGATTGCAGAGGAATATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTATTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTTAGATAGTGCGGATCGACGTCATCAATGACGTTGTACCAAGCATCATTATTATACACTTTTGGACTTAAATCTAAATGGCCACATAGATAATTATGTGGTCCCAATGACCTAGCCCACATCGTCTTCCCTGTTCTACTATCACCCTCAATTACTATACTTATTGGCCTAAATGGCCGCGCAGCTTCACTGAGAACATTATTACAAGCCCATTCTTCAAGTTCTCCGGGAACTTGATTAAAAGAAGAAGAAGAAAAGGGAGAAATATATTCCTCTATAGGAGGAGTAAAAATCCGATCTAAATTACATTTTATATTGTGATATTGGAAAATATAATCTTTTGGAAGTTTTTCCCTCATTATTGCTAACGCCGCTTCAGCCGAACCTGCATTGAGGGCCTCTGCTGCTGCATCATTAGCTGTCTGTTGACCTCCTCTAGCAGATCGTCCATCGATCTGAAACTGACCCCAGTCGATGTAATCACCGTCCTTCTCGATGTAAGATTTGACATCGGAGCTGGATTTAGCTCCCTGGAAGTTTGGATGGTATTGAGTTGAGGTATTAGGGTGAGTGACATCGAAATGTCTGGGGTTTCTGAACTGGCATTTACCTTTGAATTGGATGAGCGCGTGGATATGCATAGACCCATCTTGGTGTTTTTCTTGTGATACTCTGATAAATAATTTGTCAGATGGACATGAAATGTTTTGAAGGAGTTCGAGCATCTGCTCTTTCGGTATTGGGCATTTTGGGAAAGTGAGAAAGATATTTTTTGCCTTAACTTGGAATTGGTTTGTACGTGGCATATTGAATTGGGTGCTCTACAAACCTCATAGGAATGGGGTGCTTTGGGTGCCTATTTATATCGAGCTCCCAAATGGCAATTTTGTAATTTTGAAAAGTAATTCAAAACCCTAACGCTCCCAAAAGCGGACATCCGTATAATATT

Gene Information

NCBI Accession NP_808846.1
Location 135-473
Gene Name AV2
Protein Name AV2 protein
Coding Region ATGTGGGATCCACTCCTAAACGAATTTCCAGAAAACGTCCACGGTTTTCGTTGTATGTTAGCGGTGAAGTACCTGCAAGAGATCGAAAAGACGTATTCCCCTGATACCCTAGGATTTGATCTCATTCGTGATCTTACCGGTGTAATTCGTGCGAAGAATTATGTCGAAGCGTCCAGCAGATATTCTCATTTCTACGCCCGTCTCGAAAGTACGTCGCCGTCTGAACTTCGACAGCCCATACAACAGCCGTGCTGCTGTCCCCACTGTCCGCGTCACAAAAGGGCAGATATGGAAGAACCGACCTGCATACAGAAAGCCCAAGTTCTACAGAATGTATAG
Protein Sequence MWDPLLNEFPENVHGFRCMLAVKYLQEIEKTYSPDTLGFDLIRDLTGVIRAKNYVEASSRYSHFYARLESTSPSELRQPIQQPCCCPHCPRHKRADMEEPTCIQKAQVLQNV

NCBI Accession NP_808847.1
Location 295-1065
Gene Name AV1
Protein Name AV1 protein
Coding Region ATGTCGAAGCGTCCAGCAGATATTCTCATTTCTACGCCCGTCTCGAAAGTACGTCGCCGTCTGAACTTCGACAGCCCATACAACAGCCGTGCTGCTGTCCCCACTGTCCGCGTCACAAAAGGGCAGATATGGAAGAACCGACCTGCATACAGAAAGCCCAAGTTCTACAGAATGTATAGAAGCCCTGATGTCCCTAAGGGATGTGAGGGTCCATGTAAGGTCCAATCTTTCGATGCGAAGAACGACATTGGACATATGGGCAAGGTAATCTGTTTGTCTGACGTTACCCGTGGTATTGGGCTTACTCATCGAGTTGACAAGCGATTCTGTGTGAAGTCACTTTATTTTGTCGGGAAGATCTGGATGGATGAAAATATTAAGGTTAAGAATCACACTAACACCGTTTTATTCTGGATAGTTAGGGATCGGCGTCCTACTGGAACGCCTTATGATTTTCAGCAGGTGTTTAATGTATATGATAATGAACCCAGCACTGCTACTGTGAAGAACGATCAGCGTGATCGTTTCCAGGTTATAAGGAGGTTCCAGGCTACTGTTACTGGTGGACAATATGCAGCTAAGGAGCAGGCGATTATTAGAAAGTTTTATCGTGTTAATAATTATGTAGTTTACAATCACCAGGAAGCTGGGAAGTACGAGAACCATACTGAAAATGCTCTATTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACTTTGAAAGTCAGGAGTTATTTCTATGACTCAGTGACGAATTAA
Protein Sequence MSKRPADILISTPVSKVRRRLNFDSPYNSRAAVPTVRVTKGQIWKNRPAYRKPKFYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHRVDKRFCVKSLYFVGKIWMDENIKVKNHTNTVLFWIVRDRRPTGTPYDFQQVFNVYDNEPSTATVKNDQRDRFQVIRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKVRSYFYDSVTN

NCBI Accession NP_808848.1
Location 1031-1438
Gene Name AC3
Protein Name AC3 protein
Coding Region ATGGATTCACGCACCGGGGAACTACTCACTGCAACTCAATCAGAGAGTGGCGTATATATCTGGACGGTAAAAAATCCCCTATATTTCAAGATAACCAGGCACACAGAGAGCCCATTCTGGAGGAACCACGACATAATCACGTTACAAATACAGTTCAACAACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAGTCTGCAAAATCTGGACTCATTTACATCCTCAGACCTCGCGCTTCTTAGTAGTATTTAAATATCAGTGTAATAAATATTTAGATAAATTAGGCGTGATTATTATAAACAATGTCAATGTATTAGAAGGAACAATTGATGTAATTGAAGATCATGATATATATTTACTATTTATTAATTCGTCACTGAGTCATAGAAATAACTCCTGA
Protein Sequence MDSRTGELLTATQSESGVYIWTVKNPLYFKITRHTESPFWRNHDIITLQIQFNNNLRKALGIHKCFLVCKIWTHLHPQTSRFLVVFKYQCNKYLDKLGVIIINNVNVLEGTIDVIEDHDIYLLFINSSLSHRNNS

NCBI Accession NP_808849.1
Location 1179-1583
Gene Name AC2
Protein Name AC2 protein
Coding Region ATGCGATCTTCGTCACCCTCGAAGGCCCACTCTACTCAGATACCTATCAAGGTGCAACACCGAATAGCGAAGAGGACAATCAGACGACGGAGAGTTGATCTACGTTGCGGATGTTCGTACTTCGTCGCCATAGGCTGTCACAATAATGGATTCACGCACCGGGGAACTACTCACTGCAACTCAATCAGAGAGTGGCGTATATATCTGGACGGTAAAAAATCCCCTATATTTCAAGATAACCAGGCACACAGAGAGCCCATTCTGGAGGAACCACGACATAATCACGTTACAAATACAGTTCAACAACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAGTCTGCAAAATCTGGACTCATTTACATCCTCAGACCTCGCGCTTCTTAGTAGTATTTAA
Protein Sequence MRSSSPSKAHSTQIPIKVQHRIAKRTIRRRRVDLRCGCSYFVAIGCHNNGFTHRGTTHCNSIREWRIYLDGKKSPIFQDNQAHREPILEEPRHNHVTNTVQQQPEESVGDTQMFSSLQNLDSFTSSDLALLSSI

NCBI Accession NP_808850.1
Location 1486-2571
Gene Name AC1
Protein Name AC1 protein
Coding Region ATGCCACGTACAAACCAATTCCAAGTTAAGGCAAAAAATATCTTTCTCACTTTCCCAAAATGCCCAATACCGAAAGAGCAGATGCTCGAACTCCTTCAAAACATTTCATGTCCATCTGACAAATTATTTATCAGAGTATCACAAGAAAAACACCAAGATGGGTCTATGCATATCCACGCGCTCATCCAATTCAAAGGTAAATGCCAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAATACCTCAACTCAATACCATCCAAACTTCCAGGGAGCTAAATCCAGCTCCGATGTCAAATCTTACATCGAGAAGGACGGTGATTACATCGACTGGGGTCAGTTTCAGATCGATGGACGATCTGCTAGAGGAGGTCAACAGACAGCTAATGATGCAGCAGCAGAGGCCCTCAATGCAGGTTCGGCTGAAGCGGCGTTAGCAATAATGAGGGAAAAACTTCCAAAAGATTATATTTTCCAATATCACAATATAAAATGTAATTTAGATCGGATTTTTACTCCTCCTATAGAGGAATATATTTCTCCCTTTTCTTCTTCTTCTTTTAATCAAGTTCCCGGAGAACTTGAAGAATGGGCTTGTAATAATGTTCTCAGTGAAGCTGCGCGGCCATTTAGGCCAATAAGTATAGTAATTGAGGGTGATAGTAGAACAGGGAAGACGATGTGGGCTAGGTCATTGGGACCACATAATTATCTATGTGGCCATTTAGATTTAAGTCCAAAAGTGTATAATAATGATGCTTGGTACAACGTCATTGATGACGTCGATCCGCACTATCTAAAACACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACAAAATACGGGAAGCCAGTTCAAATTAAAGGTGGAATTCCCACTATATTCCTCTGCAATCCTGGACCAAACTCCAGCTATAAAGAGTACTTGGAAGAAGAAAAGAACTCCGCACTCAGAAACTGGGCCATAAAGAATGCGATCTTCGTCACCCTCGAAGGCCCACTCTACTCAGATACCTATCAAGGTGCAACACCGAATAGCGAAGAGGACAATCAGACGACGGAGAGTTGA
Protein Sequence MPRTNQFQVKAKNIFLTFPKCPIPKEQMLELLQNISCPSDKLFIRVSQEKHQDGSMHIHALIQFKGKCQFRNPRHFDVTHPNTSTQYHPNFQGAKSSSDVKSYIEKDGDYIDWGQFQIDGRSARGGQQTANDAAAEALNAGSAEAALAIMREKLPKDYIFQYHNIKCNLDRIFTPPIEEYISPFSSSSFNQVPGELEEWACNNVLSEAARPFRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLEEEKNSALRNWAIKNAIFVTLEGPLYSDTYQGATPNSEEDNQTTES

NCBI Accession NP_808851.1
Location 2130-2414
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGTCTATGCATATCCACGCGCTCATCCAATTCAAAGGTAAATGCCAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAATACCTCAACTCAATACCATCCAAACTTCCAGGGAGCTAAATCCAGCTCCGATGTCAAATCTTACATCGAGAAGGACGGTGATTACATCGACTGGGGTCAGTTTCAGATCGATGGACGATCTGCTAGAGGAGGTCAACAGACAGCTAATGATGCAGCAGCAGAGGCCCTCAATGCAGGTTCGGCTGAAGCGGCGTTAG
Protein Sequence MGLCISTRSSNSKVNASSETPDISMSLTLIPQLNTIQTSRELNPAPMSNLTSRRTVITSTGVSFRSMDDLLEEVNRQLMMQQQRPSMQVRLKRR

References More References in PubMed

1

Molecular characterization of squash leaf curl Yunnan virus, a new begomovirus and evidence for recombination.

Xie Y, et al.  Arch Virol. 2003 Oct;148(10):2047-54. doi: 10.1007/s00705-003-0153-2.

PMID: 14551824
2

Distinct tomato yellow leaf curl Chuxiong virus isolated from whiteflies and plants in China and its symptom determinant and suppressor of post-transcriptional gene silencing.

Xie Y, et al.  Virology. 2024 Jun;594:110040. doi: 10.1016/j.virol.2024.110040. Epub 2024 Mar 5.

PMID: 38471198
3

Development and application of triple antibody sandwich enzyme-linked immunosorbent assays for begomovirus detection using monoclonal antibodies against Tomato yellow leaf curl Thailand virus.

Seepiban C, et al.  Virol J. 2017 May 30;14(1):99. doi: 10.1186/s12985-017-0763-z.

PMID: 28558726
4

Genomic distinctiveness and recombination in tomato leaf curl New Delhi virus (ToLCNDV-BG) isolates infecting bitter gourd.

Renukadevi P, et al.  3 Biotech. 2024 Aug;14(8):184. doi: 10.1007/s13205-024-04009-3. Epub 2024 Jul 26.

PMID: 39070236