Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000837705.1 |
Release date | 2015/2/12 |
Submitter | Lazarowitz,S.G., Lazdins,I.B. |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | NP_047243.2 |
---|---|
Location | 1619-2634,1->28 |
Protein Name | replication-associated protein |
Coding Region | ATGCCACGAAACCCTAATTCCTTTCGTTTAACTGCCAGAAACATATTCTTAACTTATCCAAGGTGCGATGTTCCCAAAGAAGAAGTTCTTGAGATGCTTCTGCATCTCTCGTGGTCGGTCGTCAAACCGAATTACGTTAGAGTCGCCAGAGAGGAACATTCCGACGGGTCTCCGCACTTACACTGCCTCATTCAATTATCTGGAAAATCCAACATCAAGGATGCTGGATTTTTCGACCTCACTCACCCCAGACGGTCTGCCCGATTTCACCCAAACATTCAGGCTGCCAAAGACACCAACGCCGTCAAGAACTACATCACCAAAGAAGGTGATTATTGTGAATCCGGGCAATATAAAGTGTCTGGGGGTTCAAAGTCAAACAAAGACGACGTATATCACAATGCCGTTAATGCAGGTAGTGCGGGAGAAGCTCTCGACATTATAAAAGCTGGTGATCCAAAGACGTTTATCGTTAATTATCACAATTTATTAGCTAACGTCGAGAGATTATTTCAGAAACCTCCGGAACCGTGGGTTCCTCCGTTTGAGCTCTCTTCGTTCACGTCAGTTCCAGAAGAGTTACAAGATTGGGCTGATGATTATTTTAATGAGTGTTCCGCTGCGGCAAGGCCAACTAGTATAATCATAGAAGGTGGTTCAAGAACGGGCAAGACAATGTGGGCTAGGTCGTTAGGCCCACATAATTACTTGAGCGGCCATCTTGATTTCAATTCTAGGGTTTTCTCAAATGACGTCAAGTATAACGTCATTGATGACGTCGCTCCGCATTACCTAAAGCTAAAGCACTGGAAGGAATTGATTGGGGCCCAAAGGGACTGGCAGTCCAACTGTAAATATGGAAAGCCGGTTCAAATTAAAGGTGGAATCCCATCAATCGTGCTGTGCAATCCTGGAGAGGGGTCCAGTTATAAAGATTTCCTCGACAAAGCCGAGAACTCGGCTCTAAGAGAGTGGACTGAAAAAAATGCCAAATTCATCTTCCTCGAAGGTCCCCTCTATCAAAGCACAGCACAGGATTGCTAA |
Protein Sequence | MPRNPNSFRLTARNIFLTYPRCDVPKEEVLEMLLHLSWSVVKPNYVRVAREEHSDGSPHLHCLIQLSGKSNIKDAGFFDLTHPRRSARFHPNIQAAKDTNAVKNYITKEGDYCESGQYKVSGGSKSNKDDVYHNAVNAGSAGEALDIIKAGDPKTFIVNYHNLLANVERLFQKPPEPWVPPFELSSFTSVPEELQDWADDYFNECSAAARPTSIIIEGGSRTGKTMWARSLGPHNYLSGHLDFNSRVFSNDVKYNVIDDVAPHYLKLKHWKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLDKAENSALREWTEKNAKFIFLEGPLYQSTAQDC |
NCBI Accession | NP_047244.1 |
---|---|
Location | 385-1140 |
Protein Name | hypothetical protein |
Coding Region | ATGGTTAAGAGAGATGCCCCATGGCGTTTAATGGCGGGGACCTCAAAGGTCTCACGCTCTGCTAACTTTTCGCCTCGTGAAGGTATGGGCCCAAAATTCAACAAGGCCGCTGCATGGGTTAACAGGCCCATGTACAGGAAGCCCAGGATCTATCGCACAATGAGAGGCCCAGACATCCCCAAGGGATGTGAGGGGCCATGCAAGGTTCAGTCTTACGAGCAGCGGCATGATATCTCTCATCTTGGCAAGGTAATGTGTATTTCTGACGTGACGCGTGGTAATGGCATTACTCACCGCGTCGGCAAGCGCTTTTGTGTTAAGTCTGTATATATTTTAGGCAAGATATGGATGGACGAAAATATCAAGTTGAAGAATCACACGAACAGTGTGATGTTTTGGTTAGTTCGAGACCGTAGACCATATGGCACTCCTATGGATTTCGGCCAGGTGTTCAATATGTTCGACAACGAGCCCAGTACGGCAACTATCAAGAACGATCTACGTGATCGTTATCAAGTCATGCACAGGTTCTACGCGAAGGTCACTGGTGGTCAGTATGCGAGCAACGAACAAGCCTTGGTTAGGCGTTTCTGGAAGGTCAACAACCATGTTGTGTATAACCACCAGGAAGCCGGGAAATACGAGAATCATACGGAGAACGCTCTGTTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTATATGCGACATTGAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAA |
Protein Sequence | MVKRDAPWRLMAGTSKVSRSANFSPREGMGPKFNKAAAWVNRPMYRKPRIYRTMRGPDIPKGCEGPCKVQSYEQRHDISHLGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATIKNDLRDRYQVMHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
NCBI Accession | NP_047245.1 |
---|---|
Location | 1137-1541 |
Protein Name | hypothetical protein |
Coding Region | ATGGTAATGGATTTACGCACATGGGACGACATCACTGTGCATCAGGCAGAGAATTCCGTTTTTATTTGGGAGGTTCCAAATCCCCTCTATTTCAAGATGTACAANGTGGAGGATCCACTCTACACGCACACAAGGATATACCACATACAAATCCGGTTCAACCACAACCTGAGGAGAGCACTAAATCTTCACAAAGCGTTCCTGAACTTCCAAGTCTGGACGGAATCGATTCGAGCTTCTGGGACGACATATTTGAATAGATTTAGGCATTTAGTTATGTTGTACTTAGATAGGTTAGGAGTTATTGGTCTCAATAACGTTATACGAGCTGTATCTTGGGCAACAGACCGTTCATATGTAAATTATGTACTCGAGAATCATGAAATAAAATTCAAAATTTATTAA |
Protein Sequence | MVMDLRTWDDITVHQAENSVFIWEVPNPLYFKMYXVEDPLYTHTRIYHIQIRFNHNLRRALNLHKAFLNFQVWTESIRASGTTYLNRFRHLVMLYLDRLGVIGLNNVIRAVSWATDRSYVNYVLENHEIKFKIY |
NCBI Accession | NP_047246.1 |
---|---|
Location | 1282-1677 |
Protein Name | hypothetical protein |
Coding Region | ATGCCAAATTCATCTTCCTCGAAGGTCCCCTCTATCAAAGCACAGCACAGGATTGCTAAAAAGAGAGCTGTTCGTCGTCGAAGAATCGACTTAGACTGTGGCTGTTCCATATACATTCATATCAACTGCGCCAAAGATGGTAATGGATTTACGCACATGGGACGACATCACTGTGCATCAGGCAGAGAATTCCGTTTTTATTTGGGAGGTTCCAAATCCCCTCTATTTCAAGATGTACAANGTGGAGGATCCACTCTACACGCACACAAGGATATACCACATACAAATCCGGTTCAACCACAACCTGAGGAGAGCACTAAATCTTCACAAAGCGTTCCTGAACTTCCAAGTCTGGACGGAATCGATTCGAGCTTCTGGGACGACATATTTGAATAG |
Protein Sequence | MPNSSSSKVPSIKAQHRIAKKRAVRRRRIDLDCGCSIYIHINCAKDGNGFTHMGRHHCASGREFRFYLGGSKSPLFQDVQXGGSTLHAHKDIPHTNPVQPQPEESTKSSQSVPELPSLDGIDSSFWDDIFE |
NCBI Accession | NP_047247.2 |
---|---|
Location | 705-1475 |
Protein Name | Nuclear shuttle protein |
Coding Region | ATGTATTCGACGAGCAATAGACGGGGTCGATCGCAAACTCAGCGAGGTTCTCATGTACGCCGTACAGGTGTCAAGCGTTCATATGGTGCAGCCCGTGGTGATGATAGGCGTCGACCCAACGTGGTATCAAAGACTCAAGTTGAACCGAGAATGACTATTCAGCGTGTTCAAGAGAACCAGTTTGGCCCAGAATTTGTCTTGAGTCAAAACTCAGCGTTGTCCACGTTTGTAACATATCCTAGCTATGTTAAGACTGTTCCCAATCGCACTAGAACGTATATAAAATTGAAACGAGTGCGTTTTAAGGGAACTCTGAAAATTGAACGTGGACAAGGTGACACTATTATGGACGGGCCCAGTTCTAATATTGAAGGAGTATTTTCTATGGTCATCGTGGTTGATCGGAAACCACATGTTAGTCAATCTGGCCGTCTACATACATTTGATGAGTTGTTTGGCGCGCGTATCCATTGTCACGGTAATTTATCTGTCGTACCTGCATTGAAGGACCGTTACTACATTAGACACGTTACGAAGCGTGTGGTGTCTCTTGAAAAGGACACGTTACTGATTGATCTCCATGGTACGACACAACTGTCTAACAAGCGTTATAATTGTTGGGCATCGTTCAGCGATCTTGAACGGGATTCATGTAATGGCGTTTACGGTAACATAACCAAGAACGCTCTGTTAGTGTATTACTGTTGGCTGTCGGATGCCCAGTCCAAGGCATCAACATATGTATCGTTTGAACTGGACTATTTGGGATGA |
Protein Sequence | MYSTSNRRGRSQTQRGSHVRRTGVKRSYGAARGDDRRRPNVVSKTQVEPRMTIQRVQENQFGPEFVLSQNSALSTFVTYPSYVKTVPNRTRTYIKLKRVRFKGTLKIERGQGDTIMDGPSSNIEGVFSMVIVVDRKPHVSQSGRLHTFDELFGARIHCHGNLSVVPALKDRYYIRHVTKRVVSLEKDTLLIDLHGTTQLSNKRYNCWASFSDLERDSCNGVYGNITKNALLVYYCWLSDAQSKASTYVSFELDYLG |
NCBI Accession | NP_047248.1 |
---|---|
Location | 1647-2528 |
Protein Name | hypothetical protein |
Coding Region | ATGGGTTCTCAATTAGTTCCACCCCCAAGCGCATTCAATTACATAGAATCGCAGAGGGACGAATTTCAGTTATCGCACGACCTAACGGAAATTGTTCTGCAATTTCCCTCGACGGCATCTCAGATAACAGCGAGGCTGAGTCGTAGTTGTATGAAAATCGACCACTGCGTCATAGAATATCGGCAACAGGTTCCGATCAACGCATCTGGTACGGTGATAGTGGAGATTCACGACAAACGCATGACGGACAATGAATCTCTGCAAGCGTCGTGGACTTTTCCGATAAGATGTAACATAGATCTCCACTATTTTTCATCATCGTTCTTCTCTCTAAAAGACCCAATCCCATGGAAGTTATACTATCGAGTCTCAGACTCGAATGTGCATCAAATGACGCATTTCGCTAAATTCAAGGGCAAACTGAAGCTATCGTCGGCGAAGCACTCCGTTGATATCCCTTTCCGGGCACCAACAGTAAAGATACTTGCAAAACAATTTAGCGAAAAGGACATTGATTTCTGGCACGTGGGATACGGCAAGTGGGAGAGAAGACTGGTCAAATCCGCATCATCATCTAGATTTGGGCTAAGAGGCCCAATTGAAATTAATCCAGGTGAATCTTGGGCCACAAAAAGTGCAATAGGCCCAACTAACAGAAATGCGGATTTGGATATTGAAGAAGAGCTGCTTCCATACAGGGAACTCAACAGATTGGGAACTAACATCTTAGATCCTGGGGAATCAGCTTCAATAGTCGGAATACAACGGTCGCAATCGAACATCACCATGTCAATGTCACAGTTGAACGAATTAGTTAGATCCACTGTACATGAATGCATTAAAACCAGTTGTATCCCGAGCACTCCAAAATCCCTAAGCTAA |
Protein Sequence | MGSQLVPPPSAFNYIESQRDEFQLSHDLTEIVLQFPSTASQITARLSRSCMKIDHCVIEYRQQVPINASGTVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYFSSSFFSLKDPIPWKLYYRVSDSNVHQMTHFAKFKGKLKLSSAKHSVDIPFRAPTVKILAKQFSEKDIDFWHVGYGKWERRLVKSASSSRFGLRGPIEINPGESWATKSAIGPTNRNADLDIEEELLPYRELNRLGTNILDPGESASIVGIQRSQSNITMSMSQLNELVRSTVHECIKTSCIPSTPKSLS |
1 |
Tomato Yellow Leaf Curl Virus: Impact, Challenges, and Management. Prasad A, et al. Trends Plant Sci. 2020 Sep;25(9):897-911. doi: 10.1016/j.tplants.2020.03.015. Epub 2020 May 1. PMID: 32371058 |
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2 |
Squash leaf curl virus (SLCV): a serious disease threatening cucurbits production in Palestine. Ali-Shtayeh MS, et al. Virus Genes. 2014 Apr;48(2):320-8. doi: 10.1007/s11262-013-1012-1. Epub 2013 Nov 21. PMID: 24258392 |
3 |
Tobacco leaf curl Puer virus: a novel monopartite begomovirus infecting Nicotiana tabacum in China. Jiang N, et al. Arch Virol. 2022 Jan;167(1):229-232. doi: 10.1007/s00705-021-05267-9. Epub 2021 Oct 15. PMID: 34652555 |
4 |
Tomato Leaf Curl New Delhi Virus: An Emerging Virus Complex Threatening Vegetable and Fiber Crops. Moriones E, et al. Viruses. 2017 Sep 21;9(10):264. doi: 10.3390/v9100264. PMID: 28934148 |
5 |
Donati L, et al. Viruses. 2022 Mar 15;14(3):607. doi: 10.3390/v14030607. PMID: 35337014 |
6 |
Zaidi SS, et al. Mol Plant Pathol. 2017 Sep;18(7):901-911. doi: 10.1111/mpp.12481. Epub 2016 Oct 17. PMID: 27553982 |
7 |
Azeem H, et al. Mol Biol Rep. 2022 Jun;49(6):5635-5644. doi: 10.1007/s11033-022-07557-0. Epub 2022 May 22. PMID: 35598198 |
8 |
Gireeshbai S, et al. Lett Appl Microbiol. 2022 Oct;75(4):1000-1009. doi: 10.1111/lam.13774. Epub 2022 Jul 2. PMID: 35723883 |
9 |
Senna leaf curl virus: a novel begomovirus identified in Senna occidentalis. Kumar J, et al. Arch Virol. 2016 Sep;161(9):2609-12. doi: 10.1007/s00705-016-2931-7. Epub 2016 Jun 17. PMID: 27314944 |
10 |
Rapid detection of squash leaf curl virus by loop-mediated isothermal amplification. Kuan CP, et al. J Virol Methods. 2010 Oct;169(1):61-5. doi: 10.1016/j.jviromet.2010.06.017. Epub 2010 Jul 13. PMID: 20603151 |