Spinach yellow vein virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000915875.1 |
| Isolate |
India: Sikar, Rajasthan |
| Release date |
2015/2/22 |
| Submitter |
Sahu,A.K., Marwal,A., Sharma,P., Gaur,R.K. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCCGGATGGGCGCGATTTTTTTTGTGGCCCCCACAAAGCACTAATTGACAATGACATATGGACCAATCAGAATCGTTCCTCATAACCTAATTGTTTGCGTGGTCCCCCCTATAAACTTAGTGCGCAAGTTGTGTTTTCCATTCACCATGTGGGATCCGTTATTGAACGAGTTTCCCGAAACCGTTCACGGTTTTAGGTGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAAAATACGTATTCCCCAGATACTCTGGGATACGATTTAATTAGGGATTTGATTTCAGTAATAAGGGCTAGGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATACGTGAGCCGTGTTGCTGCCCCCATTGTCCGCGTGAGATTTTGTGTGAAGTCTGTGTATGTGTTGGGTAAGATCTGGATGGATGAGAACATTAAGTACAGAAGTCCAGATGTTCCTAGAGGATGTGAAGGCCCATGTAAGGTTCAGTCCTTTGAGTCCAGACATGATATTCAGCATATAGGTAAAGTCATGTGTGTCAGTGATGTTACTCGTGGTAAACCTCAAGATTTTGGAGAGGTGTTTAACATGTTTGATAATGAGCCCAGTACGGCGACTAAGATCTGGATGGATGAGAACATTAAGACCAAGAATCACACGAATAGTGTGATGTTTTTCGGTGGACAATACGCTTCAAAGGAACAAGCTCTTGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAAGCTGGCAAGTATGAACATCGTGATAGGTATCAAGTGCTGCGCAAATGGTATGCAACTGTCACCGGTGGACAATACGCTTCAAAGGAACAAGCTCTTGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAAGCTGGCAAGTATGAAAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACTCATGCCTCTAACCCAGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTGACAAATTAATAAATATTGAATTTTATTGAAGATGATTGGTCTACATATACAACATGCTCTAATACATTCCAAATATTGAATTTTATTGAAGATGATTGGTCTACATATACAACATGCTCTAATACATTCCAATGATTGGTCACTTGGGTCTTAAAGACCCTTAAGAAACGACCAATCGGAGGCTGTGAGGTCATCCAGATTCGGAAGGCTAGGAAACATTTGTGTATCCCCAACGCTTTCCTCAGGCTGTGATTGAACTGTATCTGGACGGTGATGATGTCTCTGTTCATTAGGAATGGCCTGTTGTGGTGCATCCAGATTCGGAAGGCTAGGAAACATTTGTGTATCCCCAACGCTTTCCTCAGGCTGTGTTGAGCTGCAGTGATGAGTTCCCCTGTGCGAAAGCATGGGGGCGTGGCAAATGATTGGTCTGAAGTATGAACACCCACAAGGGAGATCAACTCTCCGACGTCTGGTCCCCTTCTTGGCTAGCCTGTGCTGCACTTTGATTAAAGCATGGGTAGAGTGGGCCTTCGAGGGTGACGAAGATCGCATTCTTTAAAGCCCAATTTTTGAGTGCAGAATTCTTCTCTTCGTCCAAAAACTCCTTAAATATTGAATTTTATTGAAGATGATTGGTCTACATATACAACATGCTCTAATACATTCCAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCATTACTGAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCATTACTGGCCCACATTGTTTTGCCCGTTCTGCTATCACCCTCTATGACTATACTTATTGGTCTATTGGCCCGCGCAGCGTCACCGACAACATTCTCGGCAGCCCACTCTTCAAGTTCTTCTGGAACTTGATCAAAAGAAGAAGAAGAAAAAGGAGAAACATAAACCTCCATCGGAGGTGTATAAATCCTTTCTAAATTACATTTTAAATTATGATATTGAAAAATAAAATCTTTAGGGAGTTTTTCCCTAATTATTGCTAAAGCAGCTTCAGCCGAACCTGCGTTTAGGGCCTCTGCATGATTGGTCAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCATTACTGATGTAATCACTGTCCTTCTCGATGTAGGACTTGACATCAGAGCTGGACTTAGCTCCCTGGAAGTTTGGGTGGAATTGGGTGGAGTTATTAGGGTGAGTGACATCGAAATGTCTGGGGTTTCGGAACTTGGATTTACCTTTGAACTGGATGAGGGCATGGATATGCAGAGACCCATCTTGGTGTTTTTCTTGTGCCACTCTAAAGCATGGGTTATCAGATGGGCAATTTATTGACTGAAGAATTTCGAGCAGTATGAAAATGGGTATTGGGGTATGAAAATAAGTAAGGAAGATATTTTTGGCATTAACACAAAAAGAGTTAATACGAGGCATATTGAATTGGGGACACTCAAAACTCTGAGGAATGGGGGACTCCGGGGACGCATTTATATGGCGTCCCCCAATGGCTTTTTCGTAATTACGAAAGAAATTTCAAAATCCTAACGCTCCAAAAGCGGGCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_008888538.1
|
|
Location
|
52-456 |
|
Gene Name
|
AV2 |
|
Protein Name
|
pre-coat protein |
|
Coding Region
|
ATGACATATGGACCAATCAGAATCGTTCCTCATAACCTAATTGTTTGCGTGGTCCCCCCTATAAACTTAGTGCGCAAGTTGTGTTTTCCATTCACCATGTGGGATCCGTTATTGAACGAGTTTCCCGAAACCGTTCACGGTTTTAGGTGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAAAATACGTATTCCCCAGATACTCTGGGATACGATTTAATTAGGGATTTGATTTCAGTAATAAGGGCTAGGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATACGTGAGCCGTGTTGCTGCCCCCATTGTCCGCGTGAGATTTTGTGTGAAGTCTGTGTATGTGTTGGGTAA |
|
Protein Sequence
|
MTYGPIRIVPHNLIVCVVPPINLVRKLCFPFTMWDPLLNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHARFEGTPPSQLRQPIREPCCCPHCPREILCEVCVCVG |
|
NCBI Accession
|
YP_008888539.1
|
|
Location
|
308-1078 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATACGTGAGCCGTGTTGCTGCCCCCATTGTCCGCGTGAGATTTTGTGTGAAGTCTGTGTATGTGTTGGGTAAGATCTGGATGGATGAGAACATTAAGTACAGAAGTCCAGATGTTCCTAGAGGATGTGAAGGCCCATGTAAGGTTCAGTCCTTTGAGTCCAGACATGATATTCAGCATATAGGTAAAGTCATGTGTGTCAGTGATGTTACTCGTGGTAAACCTCAAGATTTTGGAGAGGTGTTTAACATGTTTGATAATGAGCCCAGTACGGCGACTAAGATCTGGATGGATGAGAACATTAAGACCAAGAATCACACGAATAGTGTGATGTTTTTCGGTGGACAATACGCTTCAAAGGAACAAGCTCTTGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAAGCTGGCAAGTATGAACATCGTGATAGGTATCAAGTGCTGCGCAAATGGTATGCAACTGTCACCGGTGGACAATACGCTTCAAAGGAACAAGCTCTTGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAAGCTGGCAAGTATGAAAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACTCATGCCTCTAACCCAGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTGACAAATTAA |
|
Protein Sequence
|
MSKRPADIIISTPASKVRRRLNFDSPYVSRVAAPIVRVRFCVKSVYVLGKIWMDENIKYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGKPQDFGEVFNMFDNEPSTATKIWMDENIKTKNHTNSVMFFGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYEHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
|
NCBI Accession
|
YP_008888540.1
|
|
Location
|
1075-1383 |
|
Gene Name
|
AC3 |
|
Protein Name
|
replication enhancer protein |
|
Coding Region
|
ATGCACCACAACAGGCCATTCCTAATGAACAGAGACATCATCACCGTCCAGATACAGTTCAATCACAGCCTGAGGAAAGCGTTGGGGATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGATTGGTCGTTTCTTAAGGGTCTTTAAGACCCAAGTGACCAATCATTGGAATGTATTAGAGCATGTTGTATATGTAGACCAATCATCTTCAATAAAATTCAATATTTGGAATGTATTAGAGCATGTTGTATATGTAGACCAATCATCTTCAATAAAATTCAATATTTATTAA |
|
Protein Sequence
|
MHHNRPFLMNRDIITVQIQFNHSLRKALGIHKCFLAFRIWMTSQPPIGRFLRVFKTQVTNHWNVLEHVVYVDQSSSIKFNIWNVLEHVVYVDQSSSIKFNIY |
|
NCBI Accession
|
YP_008888541.1
|
|
Location
|
1220-1624 |
|
Gene Name
|
AC2 |
|
Protein Name
|
transcriptional activator protein |
|
Coding Region
|
ATGCGATCTTCGTCACCCTCGAAGGCCCACTCTACCCATGCTTTAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGACGTCGGAGAGTTGATCTCCCTTGTGGGTGTTCATACTTCAGACCAATCATTTGCCACGCCCCCATGCTTTCGCACAGGGGAACTCATCACTGCAGCTCAACACAGCCTGAGGAAAGCGTTGGGGATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGCACCACAACAGGCCATTCCTAATGAACAGAGACATCATCACCGTCCAGATACAGTTCAATCACAGCCTGAGGAAAGCGTTGGGGATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGATTGGTCGTTTCTTAAGGGTCTTTAA |
|
Protein Sequence
|
MRSSSPSKAHSTHALIKVQHRLAKKGTRRRRVDLPCGCSYFRPIICHAPMLSHRGTHHCSSTQPEESVGDTQMFPSLPNLDAPQQAIPNEQRHHHRPDTVQSQPEESVGDTQMFPSLPNLDDLTASDWSFLKGL |
|
NCBI Accession
|
YP_008888542.1
|
|
Location
|
1728-2612 |
|
Gene Name
|
AC1 |
|
Protein Name
|
replication associated protein |
|
Coding Region
|
ATGCCTCGTATTAACTCTTTTTGTGTTAATGCCAAAAATATCTTCCTTACTTATTTTCATACCCCAATACCCATTTTCATACTGCTCGAAATTCTTCAGTCAATAAATTGCCCATCTGATAACCCATGCTTTAGAGTGGCACAAGAAAAACACCAAGATGGGTCTCTGCATATCCATGCCCTCATCCAGTTCAAAGGTAAATCCAAGTTCCGAAACCCCAGACATTTCGATGTCACTCACCCTAATAACTCCACCCAATTCCACCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTCAAGTCCTACATCGAGAAGGACAGTGATTACATCAGTAATGAGGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTACCTAAAGCACTTGACCAATCATGCAGAGGCCCTAAACGCAGGTTCGGCTGAAGCTGCTTTAGCAATAATTAGGGAAAAACTCCCTAAAGATTTTATTTTTCAATATCATAATTTAAAATGTAATTTAGAAAGGATTTATACACCTCCGATGGAGGTTTATGTTTCTCCTTTTTCTTCTTCTTCTTTTGATCAAGTTCCAGAAGAACTTGAAGAGTGGGCTGCCGAGAATGTTGTCGGTGACGCTGCGCGGGCCAATAGACCAATAAGTATAGTCATAGAGGGTGATAGCAGAACGGGCAAAACAATGTGGGCCAGTAATGAGGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTACCTAAAGCACTTCAGTAATGAGGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTACCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAGTACGGAAAGCCAGTTGGAATGTATTAG |
|
Protein Sequence
|
MPRINSFCVNAKNIFLTYFHTPIPIFILLEILQSINCPSDNPCFRVAQEKHQDGSLHIHALIQFKGKSKFRNPRHFDVTHPNNSTQFHPNFQGAKSSSDVKSYIEKDSDYISNEAWYNVIDDVDPHYLKHLTNHAEALNAGSAEAALAIIREKLPKDFIFQYHNLKCNLERIYTPPMEVYVSPFSSSSFDQVPEELEEWAAENVVGDAARANRPISIVIEGDSRTGKTMWASNEAWYNVIDDVDPHYLKHFSNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVGMY |
|
NCBI Accession
|
YP_008888543.1
|
|
Location
|
2228-2455 |
|
Gene Name
|
AC4 |
|
Protein Name
|
C4 protein |
|
Coding Region
|
ATGGGTCTCTGCATATCCATGCCCTCATCCAGTTCAAAGGTAAATCCAAGTTCCGAAACCCCAGACATTTCGATGTCACTCACCCTAATAACTCCACCCAATTCCACCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTCAAGTCCTACATCGAGAAGGACAGTGATTACATCAGTAATGAGGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTACCTAA |
|
Protein Sequence
|
MGLCISMPSSSSKVNPSSETPDISMSLTLITPPNSTQTSRELSPALMSSPTSRRTVITSVMRPGTTSLMTSIPTT |