Spinach yellow vein virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_000915875.1 |
| Isolate | India: Sikar, Rajasthan |
| Release date | 2015/2/22 |
| Submitter | Sahu,A.K., Marwal,A., Sharma,P., Gaur,R.K. |
| Host | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_023023
ACCCGGATGGGCGCGATTTTTTTTGTGGCCCCCACAAAGCACTAATTGACAATGACATATGGACCAATCAGAATCGTTCCTCATAACCTAATTGTTTGCGTGGTCCCCCCTATAAACTTAGTGCGCAAGTTGTGTTTTCCATTCACCATGTGGGATCCGTTATTGAACGAGTTTCCCGAAACCGTTCACGGTTTTAGGTGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAAAATACGTATTCCCCAGATACTCTGGGATACGATTTAATTAGGGATTTGATTTCAGTAATAAGGGCTAGGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATACGTGAGCCGTGTTGCTGCCCCCATTGTCCGCGTGAGATTTTGTGTGAAGTCTGTGTATGTGTTGGGTAAGATCTGGATGGATGAGAACATTAAGTACAGAAGTCCAGATGTTCCTAGAGGATGTGAAGGCCCATGTAAGGTTCAGTCCTTTGAGTCCAGACATGATATTCAGCATATAGGTAAAGTCATGTGTGTCAGTGATGTTACTCGTGGTAAACCTCAAGATTTTGGAGAGGTGTTTAACATGTTTGATAATGAGCCCAGTACGGCGACTAAGATCTGGATGGATGAGAACATTAAGACCAAGAATCACACGAATAGTGTGATGTTTTTCGGTGGACAATACGCTTCAAAGGAACAAGCTCTTGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAAGCTGGCAAGTATGAACATCGTGATAGGTATCAAGTGCTGCGCAAATGGTATGCAACTGTCACCGGTGGACAATACGCTTCAAAGGAACAAGCTCTTGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAAGCTGGCAAGTATGAAAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACTCATGCCTCTAACCCAGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTGACAAATTAATAAATATTGAATTTTATTGAAGATGATTGGTCTACATATACAACATGCTCTAATACATTCCAAATATTGAATTTTATTGAAGATGATTGGTCTACATATACAACATGCTCTAATACATTCCAATGATTGGTCACTTGGGTCTTAAAGACCCTTAAGAAACGACCAATCGGAGGCTGTGAGGTCATCCAGATTCGGAAGGCTAGGAAACATTTGTGTATCCCCAACGCTTTCCTCAGGCTGTGATTGAACTGTATCTGGACGGTGATGATGTCTCTGTTCATTAGGAATGGCCTGTTGTGGTGCATCCAGATTCGGAAGGCTAGGAAACATTTGTGTATCCCCAACGCTTTCCTCAGGCTGTGTTGAGCTGCAGTGATGAGTTCCCCTGTGCGAAAGCATGGGGGCGTGGCAAATGATTGGTCTGAAGTATGAACACCCACAAGGGAGATCAACTCTCCGACGTCTGGTCCCCTTCTTGGCTAGCCTGTGCTGCACTTTGATTAAAGCATGGGTAGAGTGGGCCTTCGAGGGTGACGAAGATCGCATTCTTTAAAGCCCAATTTTTGAGTGCAGAATTCTTCTCTTCGTCCAAAAACTCCTTAAATATTGAATTTTATTGAAGATGATTGGTCTACATATACAACATGCTCTAATACATTCCAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCATTACTGAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCATTACTGGCCCACATTGTTTTGCCCGTTCTGCTATCACCCTCTATGACTATACTTATTGGTCTATTGGCCCGCGCAGCGTCACCGACAACATTCTCGGCAGCCCACTCTTCAAGTTCTTCTGGAACTTGATCAAAAGAAGAAGAAGAAAAAGGAGAAACATAAACCTCCATCGGAGGTGTATAAATCCTTTCTAAATTACATTTTAAATTATGATATTGAAAAATAAAATCTTTAGGGAGTTTTTCCCTAATTATTGCTAAAGCAGCTTCAGCCGAACCTGCGTTTAGGGCCTCTGCATGATTGGTCAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCATTACTGATGTAATCACTGTCCTTCTCGATGTAGGACTTGACATCAGAGCTGGACTTAGCTCCCTGGAAGTTTGGGTGGAATTGGGTGGAGTTATTAGGGTGAGTGACATCGAAATGTCTGGGGTTTCGGAACTTGGATTTACCTTTGAACTGGATGAGGGCATGGATATGCAGAGACCCATCTTGGTGTTTTTCTTGTGCCACTCTAAAGCATGGGTTATCAGATGGGCAATTTATTGACTGAAGAATTTCGAGCAGTATGAAAATGGGTATTGGGGTATGAAAATAAGTAAGGAAGATATTTTTGGCATTAACACAAAAAGAGTTAATACGAGGCATATTGAATTGGGGACACTCAAAACTCTGAGGAATGGGGGACTCCGGGGACGCATTTATATGGCGTCCCCCAATGGCTTTTTCGTAATTACGAAAGAAATTTCAAAATCCTAACGCTCCAAAAGCGGGCATCCGTATAATATT
Gene Information
| NCBI Accession | YP_008888538.1 |
|---|---|
| Location | 52-456 |
| Gene Name | AV2 |
| Protein Name | pre-coat protein |
| Coding Region | ATGACATATGGACCAATCAGAATCGTTCCTCATAACCTAATTGTTTGCGTGGTCCCCCCTATAAACTTAGTGCGCAAGTTGTGTTTTCCATTCACCATGTGGGATCCGTTATTGAACGAGTTTCCCGAAACCGTTCACGGTTTTAGGTGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAAAATACGTATTCCCCAGATACTCTGGGATACGATTTAATTAGGGATTTGATTTCAGTAATAAGGGCTAGGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATACGTGAGCCGTGTTGCTGCCCCCATTGTCCGCGTGAGATTTTGTGTGAAGTCTGTGTATGTGTTGGGTAA |
| Protein Sequence | MTYGPIRIVPHNLIVCVVPPINLVRKLCFPFTMWDPLLNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHARFEGTPPSQLRQPIREPCCCPHCPREILCEVCVCVG |
| NCBI Accession | YP_008888539.1 |
|---|---|
| Location | 308-1078 |
| Gene Name | AV1 |
| Protein Name | coat protein |
| Coding Region | ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATACGTGAGCCGTGTTGCTGCCCCCATTGTCCGCGTGAGATTTTGTGTGAAGTCTGTGTATGTGTTGGGTAAGATCTGGATGGATGAGAACATTAAGTACAGAAGTCCAGATGTTCCTAGAGGATGTGAAGGCCCATGTAAGGTTCAGTCCTTTGAGTCCAGACATGATATTCAGCATATAGGTAAAGTCATGTGTGTCAGTGATGTTACTCGTGGTAAACCTCAAGATTTTGGAGAGGTGTTTAACATGTTTGATAATGAGCCCAGTACGGCGACTAAGATCTGGATGGATGAGAACATTAAGACCAAGAATCACACGAATAGTGTGATGTTTTTCGGTGGACAATACGCTTCAAAGGAACAAGCTCTTGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAAGCTGGCAAGTATGAACATCGTGATAGGTATCAAGTGCTGCGCAAATGGTATGCAACTGTCACCGGTGGACAATACGCTTCAAAGGAACAAGCTCTTGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAAGCTGGCAAGTATGAAAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACTCATGCCTCTAACCCAGTGTATGCTACTTTGAAGATACGGATCTATTTCTATGATTCCGTGACAAATTAA |
| Protein Sequence | MSKRPADIIISTPASKVRRRLNFDSPYVSRVAAPIVRVRFCVKSVYVLGKIWMDENIKYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGKPQDFGEVFNMFDNEPSTATKIWMDENIKTKNHTNSVMFFGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYEHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
| NCBI Accession | YP_008888540.1 |
|---|---|
| Location | 1075-1383 |
| Gene Name | AC3 |
| Protein Name | replication enhancer protein |
| Coding Region | ATGCACCACAACAGGCCATTCCTAATGAACAGAGACATCATCACCGTCCAGATACAGTTCAATCACAGCCTGAGGAAAGCGTTGGGGATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGATTGGTCGTTTCTTAAGGGTCTTTAAGACCCAAGTGACCAATCATTGGAATGTATTAGAGCATGTTGTATATGTAGACCAATCATCTTCAATAAAATTCAATATTTGGAATGTATTAGAGCATGTTGTATATGTAGACCAATCATCTTCAATAAAATTCAATATTTATTAA |
| Protein Sequence | MHHNRPFLMNRDIITVQIQFNHSLRKALGIHKCFLAFRIWMTSQPPIGRFLRVFKTQVTNHWNVLEHVVYVDQSSSIKFNIWNVLEHVVYVDQSSSIKFNIY |
| NCBI Accession | YP_008888541.1 |
|---|---|
| Location | 1220-1624 |
| Gene Name | AC2 |
| Protein Name | transcriptional activator protein |
| Coding Region | ATGCGATCTTCGTCACCCTCGAAGGCCCACTCTACCCATGCTTTAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGACGTCGGAGAGTTGATCTCCCTTGTGGGTGTTCATACTTCAGACCAATCATTTGCCACGCCCCCATGCTTTCGCACAGGGGAACTCATCACTGCAGCTCAACACAGCCTGAGGAAAGCGTTGGGGATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGCACCACAACAGGCCATTCCTAATGAACAGAGACATCATCACCGTCCAGATACAGTTCAATCACAGCCTGAGGAAAGCGTTGGGGATACACAAATGTTTCCTAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGATTGGTCGTTTCTTAAGGGTCTTTAA |
| Protein Sequence | MRSSSPSKAHSTHALIKVQHRLAKKGTRRRRVDLPCGCSYFRPIICHAPMLSHRGTHHCSSTQPEESVGDTQMFPSLPNLDAPQQAIPNEQRHHHRPDTVQSQPEESVGDTQMFPSLPNLDDLTASDWSFLKGL |
| NCBI Accession | YP_008888542.1 |
|---|---|
| Location | 1728-2612 |
| Gene Name | AC1 |
| Protein Name | replication associated protein |
| Coding Region | ATGCCTCGTATTAACTCTTTTTGTGTTAATGCCAAAAATATCTTCCTTACTTATTTTCATACCCCAATACCCATTTTCATACTGCTCGAAATTCTTCAGTCAATAAATTGCCCATCTGATAACCCATGCTTTAGAGTGGCACAAGAAAAACACCAAGATGGGTCTCTGCATATCCATGCCCTCATCCAGTTCAAAGGTAAATCCAAGTTCCGAAACCCCAGACATTTCGATGTCACTCACCCTAATAACTCCACCCAATTCCACCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTCAAGTCCTACATCGAGAAGGACAGTGATTACATCAGTAATGAGGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTACCTAAAGCACTTGACCAATCATGCAGAGGCCCTAAACGCAGGTTCGGCTGAAGCTGCTTTAGCAATAATTAGGGAAAAACTCCCTAAAGATTTTATTTTTCAATATCATAATTTAAAATGTAATTTAGAAAGGATTTATACACCTCCGATGGAGGTTTATGTTTCTCCTTTTTCTTCTTCTTCTTTTGATCAAGTTCCAGAAGAACTTGAAGAGTGGGCTGCCGAGAATGTTGTCGGTGACGCTGCGCGGGCCAATAGACCAATAAGTATAGTCATAGAGGGTGATAGCAGAACGGGCAAAACAATGTGGGCCAGTAATGAGGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTACCTAAAGCACTTCAGTAATGAGGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTACCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAGTACGGAAAGCCAGTTGGAATGTATTAG |
| Protein Sequence | MPRINSFCVNAKNIFLTYFHTPIPIFILLEILQSINCPSDNPCFRVAQEKHQDGSLHIHALIQFKGKSKFRNPRHFDVTHPNNSTQFHPNFQGAKSSSDVKSYIEKDSDYISNEAWYNVIDDVDPHYLKHLTNHAEALNAGSAEAALAIIREKLPKDFIFQYHNLKCNLERIYTPPMEVYVSPFSSSSFDQVPEELEEWAAENVVGDAARANRPISIVIEGDSRTGKTMWASNEAWYNVIDDVDPHYLKHFSNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVGMY |
| NCBI Accession | YP_008888543.1 |
|---|---|
| Location | 2228-2455 |
| Gene Name | AC4 |
| Protein Name | C4 protein |
| Coding Region | ATGGGTCTCTGCATATCCATGCCCTCATCCAGTTCAAAGGTAAATCCAAGTTCCGAAACCCCAGACATTTCGATGTCACTCACCCTAATAACTCCACCCAATTCCACCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTCAAGTCCTACATCGAGAAGGACAGTGATTACATCAGTAATGAGGCCTGGTACAACGTCATTGATGACGTCGATCCCCACTACCTAA |
| Protein Sequence | MGLCISMPSSSSKVNPSSETPDISMSLTLITPPNSTQTSRELSPALMSSPTSRRTVITSVMRPGTTSLMTSIPTT |
References More References in PubMed
| 1 |
Effects of Beet necrotic yellow vein virus in Spinach Cultivars. Mou B, et al. Plant Dis. 2012 May;96(5):618-622. doi: 10.1094/PDIS-09-11-0748. PMID: 30727521 |
|---|---|
| 2 |
First Report of Beet necrotic yellow vein virus Infecting Spinach in California. Liu HY, et al. Plant Dis. 2010 May;94(5):640. doi: 10.1094/PDIS-94-5-0640A. PMID: 30754430 |
| 3 |
Ramachandran V, et al. Plant Dis. 2023 Apr 27. doi: 10.1094/PDIS-12-22-2855-PDN. Online ahead of print. PMID: 37102723 |
| 4 |
First Report of Olive mild mosaic virus and Sowbane mosaic virus in Spinach in Greece. Gratsia ME, et al. Plant Dis. 2012 Aug;96(8):1230. doi: 10.1094/PDIS-03-12-0273-PDN. PMID: 30727072 |
| 5 |
In vitro synthesis of biologically active beet necrotic yellow vein virus RNA. Quillet L, et al. Virology. 1989 Sep;172(1):293-301. doi: 10.1016/0042-6822(89)90131-1. PMID: 2773320 |
| 6 |
Berger MR, et al. J Gen Virol. 2013 Jun;94(Pt 6):1398-1406. doi: 10.1099/vir.0.050161-0. Epub 2013 Mar 13. PMID: 23486662 |
| 7 |
First Report of Beet Yellows Virus Causing Virus Yellows in Sugar Beet in Serbia. Stanković I, et al. Plant Dis. 2023 Jun 9. doi: 10.1094/PDIS-04-23-0660-PDN. Online ahead of print. PMID: 37294151 |