Spilanthes yellow vein virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000873265.1
Isolate Viet Nam: Dalat
Release date 2015/2/13
Submitter Ha,C., Coombs,S., Revill,P., Harding,R., Vu,M., Dale,J., Ha,C.V., Revill,P.A., Harding,R.M., Vu,M.T., Dale,J.L.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_009545
ACCGGACGGCCGCGATTTTTTATACATGGCCCCACCACGCATTAACAAAGGAAAAAGGAAAAAATGGTCCCCTGGGTTTTATCCAATCAGATCTTTTATTCAAACGTTAATAATAAATGTGGTCCCCTATTAAATGCGCTCCCCCCAAGCAAAATTCAAAAAATGTGGGATCCGCTCCTCCATCCTTTTCCAGAAACCGTACATGGTTTCCGTTGTATGTTAGCCGTAAAGTATTTACAGTTAGTAGAGTCTACGTATTCCCCAGATACGTTAGGGTTTGATCTTATACGTGATTTAATTACAGTAATTAGGTGTAGTAACTATGTCGAAGCGACCAGCAAGTATTGTCATTTCCACGCCCTCATCGAAGGTACGTCGGAGACTCAACTTCGACAGCCCGTATGCGAACCGTGCCTCTGCCCCCATTGTCCGCGTCACAAAGGGTCAGGTATGGACCAACAGACCTATGTTCCGAAAGCCTCGGATGTACAGAATGTTCAGAAGCCCTGATGTTCCCAGAGGTTGTGAGGGTCCTTGTAAGGTTCAGTCTTATGATTCTAAGCATGACATTGGTCATCTTGGTAAGGTACTTTGTGTTTCGGATGTTACCCGTGGTAACGGCCTTACCCATCGTACTGGTAAACGTTTTTGTGTTAAGTCGTTGTATGTTATTGGGAAGATATGGATGGATGAGAAGATTAAGAATAAGAATCATACTAACACCGTTATGTTCTGGTTAGTTAGAGATAGAAGGCCTTCAGGTGTACCTCAGGATTTTCAACAGGTTTTTAATGTTTATGATAATGAACCTGCGACAGCTACTGTGAAGAACGATTCTCGAGATCGTTACCAGGTTTTACGGCGTTTTCAGTCTACTGTTACTGGTGGTCAGTATGCTTCTAAAGAACAGGCTATTATTCGGAAGTTTATCCGTGTAAACACACATGTGACGTATAATCATCAAGAGGATGCGAAATATGCCAATCATACGGAGAATGCTTTGTTATTGTATATGTGTTGTACTCATCATGAGAACCCTGTGTATGGAACTCTAAAGATCCGCAGTTATTTTTACGACTCGGTATCTAATTAATAAATGTTGTATTTTATATCATTTGTCTCTTCGATATCAACTGTACCGTTAAGACGTTCATACAATACATATTTAACTGCTCTAATTACATTATTAACAGAAATTACACCTAAATTATTCAAATACATCATTAATTGGGTCTTGAAGACTCTCAAGAAACGCGATGTCTGAGGTTGTAAGCTCGTCCAGACTCGATAGGTTAGAAAACATTTGTGTATCCCCAATGCTTTCCGAAGGTTGTAGTTGAATTGTATCCTTATTGTTATGATGTCTGTCTCCATGAGGAATGGTCGGTTCTCGTGGTTGATGATCTTGAAATATAGGGGATTTGTTATTGTCCAGATATAGACGCCATTCTCTGCTTGAGCTGCAGTGATAAGTTCCCCTGTGCGAGAATCCATGGTTGACACAGTTTATTGATAGGTAGTATGTGCAACCACACTTCAGGTCAATCCTCCGTCTCCTGATGGTCTTCTTCTTCGCCTCTCGGTGCTGGACCTTGATATTCGGTAGAGTACAATGGCTCGTTGAGGGTGATGAAGATCGCATTGTAATTAGACCACCTCTTGAGCTTTGCGTTCTTTTCCTCTTCTAAAAACTCTGTATATGAAGAGGTTGGACCTGGATTGCAGAGGAAGATAGTGGGTATCCCACCTTTAATTTGAACCGGCTTTCCGTACTTTCTGTTGCTTTGCCAGTTTGTTTGGGACCCCATGAATTCTTTATAGTGCTTTAGATAGTGCGGGTCGACGTCATCTATTACGTTATACCATGCGTCGTTAGAGAACACATTAGGGTTTAAGTCTAAATGTCCACATAAGTAATTATGTGGCCCTAATGACCTGGCCCACAACGTTTTCCCGGTTCGACTTTCACCTTCAATGACAATGCCTTTGGGCCTTAGAGGCCGCGCAGCGGAATTTGTCACAAATTCTTGAGCCCATACCTTCATCATGGTCGGGACATTGTCAAATGCTGTCGTGGGAAATGGACACACAAACGGTTCTGGTGGTTTCTCGAATTCTTTTTCGATATTTGCCACTATGTTGTGCCGTTGTAATAGATATGTCCACGGTTGCTTCTCCTTTACTAATTGCTTGGCAGCATTTACGGATGTTGCGTTCCAGACCTCTGCACCAAGATCGTTAAGATCCTGTTGGCCTCCTCTAGCACTCCTTCCGTCGATCTGGAATTCTCCCCATTCCAGTGTGTCTCCGTCCTTGTCGATATAGGACTTGACATCGGAGCTTGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGTTGACCGGGTTGGGGATACAAGGTCGAAGAATCGTTTATTCGTGCAGACGTATTTCCCCTCGAATTGAATAAGCACGTGGAGATGAGGGCTCCCATCTTCGTGTAGCTCTCTGCAGATTTTAATGAATTTTTTATTTGTTGGACAAACTAGGTTACTTAATTGGGAAAGTGTTTCTTCTTTGGTGAGAGAGCAGTGTGGGTATGTAAGAAAATAATTTCTGGCTGAAACTCTAAATCTGTTATTCGGAGCCATTTATTGCTCTGGATTGGTGACACTCTGAGCTCGAAGAGTATAATAGTATTGGTGACTGGTGTACAATATATAGAGGTGAGTAAAAGCCTCAAATTCCACGTGGAATCTATCGCGGCCGTCCTTATAATATT

Gene Information

NCBI Accession YP_001285760.1
Location 163-510
Gene Name AV2
Protein Name AV2 protein
Coding Region ATGTGGGATCCGCTCCTCCATCCTTTTCCAGAAACCGTACATGGTTTCCGTTGTATGTTAGCCGTAAAGTATTTACAGTTAGTAGAGTCTACGTATTCCCCAGATACGTTAGGGTTTGATCTTATACGTGATTTAATTACAGTAATTAGGTGTAGTAACTATGTCGAAGCGACCAGCAAGTATTGTCATTTCCACGCCCTCATCGAAGGTACGTCGGAGACTCAACTTCGACAGCCCGTATGCGAACCGTGCCTCTGCCCCCATTGTCCGCGTCACAAAGGGTCAGGTATGGACCAACAGACCTATGTTCCGAAAGCCTCGGATGTACAGAATGTTCAGAAGCCCTGA
Protein Sequence MWDPLLHPFPETVHGFRCMLAVKYLQLVESTYSPDTLGFDLIRDLITVIRCSNYVEATSKYCHFHALIEGTSETQLRQPVCEPCLCPHCPRHKGSGMDQQTYVPKASDVQNVQKP

NCBI Accession YP_001285761.1
Location 323-1093
Gene Name AV1
Protein Name CP protein
Coding Region ATGTCGAAGCGACCAGCAAGTATTGTCATTTCCACGCCCTCATCGAAGGTACGTCGGAGACTCAACTTCGACAGCCCGTATGCGAACCGTGCCTCTGCCCCCATTGTCCGCGTCACAAAGGGTCAGGTATGGACCAACAGACCTATGTTCCGAAAGCCTCGGATGTACAGAATGTTCAGAAGCCCTGATGTTCCCAGAGGTTGTGAGGGTCCTTGTAAGGTTCAGTCTTATGATTCTAAGCATGACATTGGTCATCTTGGTAAGGTACTTTGTGTTTCGGATGTTACCCGTGGTAACGGCCTTACCCATCGTACTGGTAAACGTTTTTGTGTTAAGTCGTTGTATGTTATTGGGAAGATATGGATGGATGAGAAGATTAAGAATAAGAATCATACTAACACCGTTATGTTCTGGTTAGTTAGAGATAGAAGGCCTTCAGGTGTACCTCAGGATTTTCAACAGGTTTTTAATGTTTATGATAATGAACCTGCGACAGCTACTGTGAAGAACGATTCTCGAGATCGTTACCAGGTTTTACGGCGTTTTCAGTCTACTGTTACTGGTGGTCAGTATGCTTCTAAAGAACAGGCTATTATTCGGAAGTTTATCCGTGTAAACACACATGTGACGTATAATCATCAAGAGGATGCGAAATATGCCAATCATACGGAGAATGCTTTGTTATTGTATATGTGTTGTACTCATCATGAGAACCCTGTGTATGGAACTCTAAAGATCCGCAGTTATTTTTACGACTCGGTATCTAATTAA
Protein Sequence MSKRPASIVISTPSSKVRRRLNFDSPYANRASAPIVRVTKGQVWTNRPMFRKPRMYRMFRSPDVPRGCEGPCKVQSYDSKHDIGHLGKVLCVSDVTRGNGLTHRTGKRFCVKSLYVIGKIWMDEKIKNKNHTNTVMFWLVRDRRPSGVPQDFQQVFNVYDNEPATATVKNDSRDRYQVLRRFQSTVTGGQYASKEQAIIRKFIRVNTHVTYNHQEDAKYANHTENALLLYMCCTHHENPVYGTLKIRSYFYDSVSN

NCBI Accession YP_001285762.1
Location 1090-1494
Gene Name AC3
Protein Name REn protein
Coding Region ATGGATTCTCGCACAGGGGAACTTATCACTGCAGCTCAAGCAGAGAATGGCGTCTATATCTGGACAATAACAAATCCCCTATATTTCAAGATCATCAACCACGAGAACCGACCATTCCTCATGGAGACAGACATCATAACAATAAGGATACAATTCAACTACAACCTTCGGAAAGCATTGGGGATACACAAATGTTTTCTAACCTATCGAGTCTGGACGAGCTTACAACCTCAGACATCGCGTTTCTTGAGAGTCTTCAAGACCCAATTAATGATGTATTTGAATAATTTAGGTGTAATTTCTGTTAATAATGTAATTAGAGCAGTTAAATATGTATTGTATGAACGTCTTAACGGTACAGTTGATATCGAAGAGACAAATGATATAAAATACAACATTTATTAA
Protein Sequence MDSRTGELITAAQAENGVYIWTITNPLYFKIINHENRPFLMETDIITIRIQFNYNLRKALGIHKCFLTYRVWTSLQPQTSRFLRVFKTQLMMYLNNLGVISVNNVIRAVKYVLYERLNGTVDIEETNDIKYNIY

NCBI Accession YP_001285763.1
Location 1208-1642
Gene Name AC2
Protein Name TrAP protein
Coding Region ATGCGATCTTCATCACCCTCAACGAGCCATTGTACTCTACCGAATATCAAGGTCCAGCACCGAGAGGCGAAGAAGAAGACCATCAGGAGACGGAGGATTGACCTGAAGTGTGGTTGCACATACTACCTATCAATAAACTGTGTCAACCATGGATTCTCGCACAGGGGAACTTATCACTGCAGCTCAAGCAGAGAATGGCGTCTATATCTGGACAATAACAAATCCCCTATATTTCAAGATCATCAACCACGAGAACCGACCATTCCTCATGGAGACAGACATCATAACAATAAGGATACAATTCAACTACAACCTTCGGAAAGCATTGGGGATACACAAATGTTTTCTAACCTATCGAGTCTGGACGAGCTTACAACCTCAGACATCGCGTTTCTTGAGAGTCTTCAAGACCCAATTAATGATGTATTTGAATAA
Protein Sequence MRSSSPSTSHCTLPNIKVQHREAKKKTIRRRRIDLKCGCTYYLSINCVNHGFSHRGTYHCSSSREWRLYLDNNKSPIFQDHQPREPTIPHGDRHHNNKDTIQLQPSESIGDTQMFSNLSSLDELTTSDIAFLESLQDPINDVFE

NCBI Accession YP_001285764.1
Location 1542-2630
Gene Name AC1
Protein Name rep protein
Coding Region ATGGCTCCGAATAACAGATTTAGAGTTTCAGCCAGAAATTATTTTCTTACATACCCACACTGCTCTCTCACCAAAGAAGAAACACTTTCCCAATTAAGTAACCTAGTTTGTCCAACAAATAAAAAATTCATTAAAATCTGCAGAGAGCTACACGAAGATGGGAGCCCTCATCTCCACGTGCTTATTCAATTCGAGGGGAAATACGTCTGCACGAATAAACGATTCTTCGACCTTGTATCCCCAACCCGGTCAACACATTTCCATCCGAACATACAGGGAGCTAAATCAAGCTCCGATGTCAAGTCCTATATCGACAAGGACGGAGACACACTGGAATGGGGAGAATTCCAGATCGACGGAAGGAGTGCTAGAGGAGGCCAACAGGATCTTAACGATCTTGGTGCAGAGGTCTGGAACGCAACATCCGTAAATGCTGCCAAGCAATTAGTAAAGGAGAAGCAACCGTGGACATATCTATTACAACGGCACAACATAGTGGCAAATATCGAAAAAGAATTCGAGAAACCACCAGAACCGTTTGTGTGTCCATTTCCCACGACAGCATTTGACAATGTCCCGACCATGATGAAGGTATGGGCTCAAGAATTTGTGACAAATTCCGCTGCGCGGCCTCTAAGGCCCAAAGGCATTGTCATTGAAGGTGAAAGTCGAACCGGGAAAACGTTGTGGGCCAGGTCATTAGGGCCACATAATTACTTATGTGGACATTTAGACTTAAACCCTAATGTGTTCTCTAACGACGCATGGTATAACGTAATAGATGACGTCGACCCGCACTATCTAAAGCACTATAAAGAATTCATGGGGTCCCAAACAAACTGGCAAAGCAACAGAAAGTACGGAAAGCCGGTTCAAATTAAAGGTGGGATACCCACTATCTTCCTCTGCAATCCAGGTCCAACCTCTTCATATACAGAGTTTTTAGAAGAGGAAAAGAACGCAAAGCTCAAGAGGTGGTCTAATTACAATGCGATCTTCATCACCCTCAACGAGCCATTGTACTCTACCGAATATCAAGGTCCAGCACCGAGAGGCGAAGAAGAAGACCATCAGGAGACGGAGGATTGA
Protein Sequence MAPNNRFRVSARNYFLTYPHCSLTKEETLSQLSNLVCPTNKKFIKICRELHEDGSPHLHVLIQFEGKYVCTNKRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQDLNDLGAEVWNATSVNAAKQLVKEKQPWTYLLQRHNIVANIEKEFEKPPEPFVCPFPTTAFDNVPTMMKVWAQEFVTNSAARPLRPKGIVIEGESRTGKTLWARSLGPHNYLCGHLDLNPNVFSNDAWYNVIDDVDPHYLKHYKEFMGSQTNWQSNRKYGKPVQIKGGIPTIFLCNPGPTSSYTEFLEEEKNAKLKRWSNYNAIFITLNEPLYSTEYQGPAPRGEEEDHQETED

NCBI Accession YP_001285765.1
Location 2201-2473
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGAGCCCTCATCTCCACGTGCTTATTCAATTCGAGGGGAAATACGTCTGCACGAATAAACGATTCTTCGACCTTGTATCCCCAACCCGGTCAACACATTTCCATCCGAACATACAGGGAGCTAAATCAAGCTCCGATGTCAAGTCCTATATCGACAAGGACGGAGACACACTGGAATGGGGAGAATTCCAGATCGACGGAAGGAGTGCTAGAGGAGGCCAACAGGATCTTAACGATCTTGGTGCAGAGGTCTGGAACGCAACATCCGTAA
Protein Sequence MGALISTCLFNSRGNTSARINDSSTLYPQPGQHISIRTYRELNQAPMSSPISTRTETHWNGENSRSTEGVLEEANRILTILVQRSGTQHP

References More References in PubMed

1

Rhizomania: Hide and Seek of Polymyxa betae and the Beet Necrotic Yellow Vein Virus with Beta vulgaris.

Decroës A, et al.  Mol Plant Microbe Interact. 2022 Nov;35(11):989-1005. doi: 10.1094/MPMI-03-22-0063-R. Epub 2022 Oct 31.

PMID: 35816413
2

Relative frequency dynamics and loading of beet necrotic yellow vein virus genomic RNAs during the acquisition by its vector Polymyxa betae.

Guo Y, et al.  J Virol. 2025 Jan 31;99(1):e0141024. doi: 10.1128/jvi.01410-24. Epub 2024 Dec 16.

PMID: 39679720
3

Beet Necrotic Yellow Vein Virus Noncoding RNA Production Depends on a 5' 3' Xrn Exoribonuclease Activity.

Flobinus A, et al.  Viruses. 2018 Mar 19;10(3):137. doi: 10.3390/v10030137.

PMID: 29562720
4

Two proteins encoded by beet necrotic yellow vein virus RNA 3 influence symptom phenotype on leaves.

Jupin I, et al.  EMBO J. 1992 Feb;11(2):479-88. doi: 10.1002/j.1460-2075.1992.tb05078.x.

PMID: 1537331
5

Biological properties of Beet soil-borne mosaic virus and Beet necrotic yellow vein virus cDNA clones produced by isothermal in vitro recombination: Insights for reassortant appearance.

Laufer M, et al.  Virology. 2018 May;518:25-33. doi: 10.1016/j.virol.2018.01.029. Epub 2018 Feb 16.

PMID: 29453056
6

Rapid and Visual Screening of Virus Infection in Sugar Beets Through Polerovirus-Induced Gene Silencing.

Bunwaree HD, et al.  Viruses. 2024 Nov 23;16(12):1823. doi: 10.3390/v16121823.

PMID: 39772132
7

Immunodetection in vivo of beet necrotic yellow vein virus-encoded proteins.

Niesbach-Klösgen U, et al.  Virology. 1990 Sep;178(1):52-61. doi: 10.1016/0042-6822(90)90378-5.

PMID: 2202150
8

Vascular movement of beet necrotic yellow vein virus in Beta macrocarpa is probably dependent on an RNA 3 sequence domain rather than a gene product.

Lauber E, et al.  J Gen Virol. 1998 Feb;79 ( Pt 2):385-93. doi: 10.1099/0022-1317-79-2-385.

PMID: 9472625
9

Beet necrotic yellow vein virus subgenomic RNA3 is a cleavage product leading to stable non-coding RNA required for long-distance movement.

Peltier C, et al.  J Gen Virol. 2012 May;93(Pt 5):1093-1102. doi: 10.1099/vir.0.039685-0. Epub 2012 Jan 18.

PMID: 22258860
10

In vitro synthesis of biologically active beet necrotic yellow vein virus RNA.

Quillet L, et al.  Virology. 1989 Sep;172(1):293-301. doi: 10.1016/0042-6822(89)90131-1.

PMID: 2773320