Bean leaf crumple virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_004787795.1
Isolate Colombia
Release date 2019/6/28
Submitter Carvajal-Yepes,M., Zambrano,L., Bueno,J.M., Raatz,B., Cuellar,W.J.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_043524
ACCGGATGGCCGCCGATTTTTGGTGTCCCCCACGTGTCCAAATCCCCGCATTCTCACCTCGCACCTAAAATGACAAGTAAAGCTGAACAATCAGCACGCGTCTGTACAGCCAACATATTTAAGACTTAGCGCCTAAGTTGTGGGCCTATAAATAAAGATACTTGTCATTTTATCCTTTAATTCAAAATGGTGAAGAGGGATGCCCCATGGCGTAATATGGCGGGGACCTCGAAGGTTAGCCGCAACGTCAATTATTCACCTCGTAGTGGATTGGGCTTTCAATCCAACAAGGCCGCTGCTTGGGTGAACAGGCCCATGTACAGGAAGCCCCGGATATATCGAATGTACAGAACCCCCGATGTGCCCAAGGGCTGTGAGGGCCCTTGCAAGGTCCAGTCTTACGAGCAGCGGCATGATATATCTCATGTTGGGAAGGTGATGTGTATTTCCGACGTCACACGTGGAAATGGTATCACTCACCGCGTTGGTAAGCGTTTTTGTGTTAAGTCTGTGTACATACTAGGCAAGATATGGATGGACGAGAACATCAAGCTCAAGAACCACACAAACAGTGTCATGTTTTGGTTGGTCAGAGATCGTAGACCGTATGGCACCCCTATGGAATTTGGTCAGGTGTTCAACATGTTCGATAATGAGCCCAGTACAGCCACTGTTAAGAACGATCTTCGTGATCGTTATCAGGTTATGCACAAGTTCTATGCTAAGGTGACTGGTGGACAATATGCGAGCAATGAACAGGCGCTGGTCAAGCGGTTTTGGAAAGTAAACAATCATGTGGTGTACAACCACCAGGAAGCAGGGAAATACGAGAATCATACGGAGAACGCTTTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCGACATTGAAAATTCGGATCTATTTTTACGATTCGATAACCAATTAATAAAACTTGAATTTTATTTCATGATTCTCGAGTATATAATTTACATAAGATTTGTCTGTTGCAAAACGAACAGCTCTTATTACATTGTTAATACCGATAACGCCAATCCTATCCAAATACAACAAGACTAAATATCTAAAGCGATTTAAATATGTCGTCCCAGAAGCCCGAACTAATGTTGTCCAAACTTGGAAGTTCAGGAATGCTTTGTGTAGACCCAGCTCCTTCCTGAGGTTGTGGTTGAATCGGACTTGGATGTGATATATCCTTGTCCTTGTGTATAGTGGATCCTCGACGAGGTTCATCTTGAAATAGAGGGGATTTGGAACCTCCCAGATAAAAACGGAATTCTCTGCTTGATGCGCAGTGATGCTCTCCCCTGTGCGTGAATCCATTGTCTGCACAGTTGATATGGAGGAATATGGAACAGCCGCAGTTCAAGTCTATCCTTCTTCGACGAATGGGTCTTCTTTTAGCGATCCTGTGCTGTGCTTTGATAGAGGGGGGCGTTGAGGAAGATGAATTTTGCATTTTTGAGAGTCCAGTTTTGTAGTGGTGCATTTTCCTCTTTGTCGAGAAAATCTTTATAACTGGCCCCCTCGCCTGGATTGCACAGCACGATTGATGGGATTCCACCTTTAATTTGAACCGGCTTTCCATATTTACAGTTCGATTGCCAGTCCTTTTGGGCCCCTATCAATTCTTTCCAGTGCTTTAGCTTTAGGTAGTTGGGCGCAACGTCATCGATAACGTTATACTCAGCCTCGTTGGAATACACTCGAGAATTGAAATCCAAGTGACCGCTCAAGTAATTATGTGGGCCTAGAGCACGTGCCCACATTGTTTTGCCGGTTCGACTATCCCCTTCGATGAATATACTAATAGGTCTATCTGTCCGCGCAGCGGCCCCCCTCCCGAAATAATCATCAGCCCAGGCTTGCATCTCAGACGGAACGTTAGTAAAGGACGAGAGTTGAAACGGAGGAGCCCATGGTTCCGGAGCTTTTTGAAATAGGCTCTCGATGTTAGCCTTGACATGATGATAACTGACTACGAACGTCTTTGGATCTCCGACCTTGATAATGTCGAGAGCCTCTCCCGCACTTCCTGCATTGATGGCGTTATAATAGACGACTTCTTTATTTGATTTGGAACCCCCAGACACTTTATATTGCCCGGATTCACAATAATCACCCTCTTTGGTGATGTAATTCTTGACGGCATTGGTGTCTTTGGCTGCCTGAATGTTTGGGTGAAAACGGGCAGACCGTCTGGGGTGAGTAAGGTCGAAAAATCTAACATCCTTGATGTTGGGCTTACCGGATAGTTGTACAAGGCAGTGTAAGTGCGGGAACCCGTCGGAATGTTCCTCTCTGGCGACTCTGATGTACGTGGGTTTGACGATCGACCAGGACAGATGTTGAAGCATTTGAAGAGCTTCATCTTTCGATATGTCGCACTGGGGATATGTTAAGAAAATGTTTTTGGCTACTAAACGAAATGAACTGGTGTTCCGTGGCATTTTCTGTAAATAACAGTGAAGACACCACGGGAGCTCTCGTCTAAAAGTCTATATTCGTGGTGTCTTGGTGTCCCATTTATACTAAAACCCTCTGGGGGACACTAGGGGCAAAATAGGCCATCCGAAATAATATT

Gene Information

NCBI Accession YP_009666506.1
Location 187-942
Gene Name AV1
Protein Name coat protein
Coding Region ATGGTGAAGAGGGATGCCCCATGGCGTAATATGGCGGGGACCTCGAAGGTTAGCCGCAACGTCAATTATTCACCTCGTAGTGGATTGGGCTTTCAATCCAACAAGGCCGCTGCTTGGGTGAACAGGCCCATGTACAGGAAGCCCCGGATATATCGAATGTACAGAACCCCCGATGTGCCCAAGGGCTGTGAGGGCCCTTGCAAGGTCCAGTCTTACGAGCAGCGGCATGATATATCTCATGTTGGGAAGGTGATGTGTATTTCCGACGTCACACGTGGAAATGGTATCACTCACCGCGTTGGTAAGCGTTTTTGTGTTAAGTCTGTGTACATACTAGGCAAGATATGGATGGACGAGAACATCAAGCTCAAGAACCACACAAACAGTGTCATGTTTTGGTTGGTCAGAGATCGTAGACCGTATGGCACCCCTATGGAATTTGGTCAGGTGTTCAACATGTTCGATAATGAGCCCAGTACAGCCACTGTTAAGAACGATCTTCGTGATCGTTATCAGGTTATGCACAAGTTCTATGCTAAGGTGACTGGTGGACAATATGCGAGCAATGAACAGGCGCTGGTCAAGCGGTTTTGGAAAGTAAACAATCATGTGGTGTACAACCACCAGGAAGCAGGGAAATACGAGAATCATACGGAGAACGCTTTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCGACATTGAAAATTCGGATCTATTTTTACGATTCGATAACCAATTAA
Protein Sequence MVKRDAPWRNMAGTSKVSRNVNYSPRSGLGFQSNKAAAWVNRPMYRKPRIYRMYRTPDVPKGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMEFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN

NCBI Accession YP_009666507.1
Location 939-1337
Gene Name AC3
Protein Name replication enhancement protein
Coding Region ATGGATTCACGCACAGGGGAGAGCATCACTGCGCATCAAGCAGAGAATTCCGTTTTTATCTGGGAGGTTCCAAATCCCCTCTATTTCAAGATGAACCTCGTCGAGGATCCACTATACACAAGGACAAGGATATATCACATCCAAGTCCGATTCAACCACAACCTCAGGAAGGAGCTGGGTCTACACAAAGCATTCCTGAACTTCCAAGTTTGGACAACATTAGTTCGGGCTTCTGGGACGACATATTTAAATCGCTTTAGATATTTAGTCTTGTTGTATTTGGATAGGATTGGCGTTATCGGTATTAACAATGTAATAAGAGCTGTTCGTTTTGCAACAGACAAATCTTATGTAAATTATATACTCGAGAATCATGAAATAAAATTCAAGTTTTATTAA
Protein Sequence MDSRTGESITAHQAENSVFIWEVPNPLYFKMNLVEDPLYTRTRIYHIQVRFNHNLRKELGLHKAFLNFQVWTTLVRASGTTYLNRFRYLVLLYLDRIGVIGINNVIRAVRFATDKSYVNYILENHEIKFKFY

NCBI Accession YP_009666508.1
Location 1078-1602
Gene Name AC2
Protein Name transactivator protein
Coding Region ATGGAAAGCCGGTTCAAATTAAAGGTGGAATCCCATCAATCGTGCTGTGCAATCCAGGCGAGGGGGCCAGTTATAAAGATTTTCTCGACAAAGAGGAAAATGCACCACTACAAAACTGGACTCTCAAAAATGCAAAATTCATCTTCCTCAACGCCCCCCTCTATCAAAGCACAGCACAGGATCGCTAAAAGAAGACCCATTCGTCGAAGAAGGATAGACTTGAACTGCGGCTGTTCCATATTCCTCCATATCAACTGTGCAGACAATGGATTCACGCACAGGGGAGAGCATCACTGCGCATCAAGCAGAGAATTCCGTTTTTATCTGGGAGGTTCCAAATCCCCTCTATTTCAAGATGAACCTCGTCGAGGATCCACTATACACAAGGACAAGGATATATCACATCCAAGTCCGATTCAACCACAACCTCAGGAAGGAGCTGGGTCTACACAAAGCATTCCTGAACTTCCAAGTTTGGACAACATTAGTTCGGGCTTCTGGGACGACATATTTAAATCGCTTTAG
Protein Sequence MESRFKLKVESHQSCCAIQARGPVIKIFSTKRKMHHYKTGLSKMQNSSSSTPPSIKAQHRIAKRRPIRRRRIDLNCGCSIFLHINCADNGFTHRGEHHCASSREFRFYLGGSKSPLFQDEPRRGSTIHKDKDISHPSPIQPQPQEGAGSTQSIPELPSLDNISSGFWDDIFKSL

NCBI Accession YP_009666509.1
Location 1415-2464
Gene Name AC1
Protein Name replication associated protein
Coding Region ATGCCACGGAACACCAGTTCATTTCGTTTAGTAGCCAAAAACATTTTCTTAACATATCCCCAGTGCGACATATCGAAAGATGAAGCTCTTCAAATGCTTCAACATCTGTCCTGGTCGATCGTCAAACCCACGTACATCAGAGTCGCCAGAGAGGAACATTCCGACGGGTTCCCGCACTTACACTGCCTTGTACAACTATCCGGTAAGCCCAACATCAAGGATGTTAGATTTTTCGACCTTACTCACCCCAGACGGTCTGCCCGTTTTCACCCAAACATTCAGGCAGCCAAAGACACCAATGCCGTCAAGAATTACATCACCAAAGAGGGTGATTATTGTGAATCCGGGCAATATAAAGTGTCTGGGGGTTCCAAATCAAATAAAGAAGTCGTCTATTATAACGCCATCAATGCAGGAAGTGCGGGAGAGGCTCTCGACATTATCAAGGTCGGAGATCCAAAGACGTTCGTAGTCAGTTATCATCATGTCAAGGCTAACATCGAGAGCCTATTTCAAAAAGCTCCGGAACCATGGGCTCCTCCGTTTCAACTCTCGTCCTTTACTAACGTTCCGTCTGAGATGCAAGCCTGGGCTGATGATTATTTCGGGAGGGGGGCCGCTGCGCGGACAGATAGACCTATTAGTATATTCATCGAAGGGGATAGTCGAACCGGCAAAACAATGTGGGCACGTGCTCTAGGCCCACATAATTACTTGAGCGGTCACTTGGATTTCAATTCTCGAGTGTATTCCAACGAGGCTGAGTATAACGTTATCGATGACGTTGCGCCCAACTACCTAAAGCTAAAGCACTGGAAAGAATTGATAGGGGCCCAAAAGGACTGGCAATCGAACTGTAAATATGGAAAGCCGGTTCAAATTAAAGGTGGAATCCCATCAATCGTGCTGTGCAATCCAGGCGAGGGGGCCAGTTATAAAGATTTTCTCGACAAAGAGGAAAATGCACCACTACAAAACTGGACTCTCAAAAATGCAAAATTCATCTTCCTCAACGCCCCCCTCTATCAAAGCACAGCACAGGATCGCTAA
Protein Sequence MPRNTSSFRLVAKNIFLTYPQCDISKDEALQMLQHLSWSIVKPTYIRVAREEHSDGFPHLHCLVQLSGKPNIKDVRFFDLTHPRRSARFHPNIQAAKDTNAVKNYITKEGDYCESGQYKVSGGSKSNKEVVYYNAINAGSAGEALDIIKVGDPKTFVVSYHHVKANIESLFQKAPEPWAPPFQLSSFTNVPSEMQAWADDYFGRGAAARTDRPISIFIEGDSRTGKTMWARALGPHNYLSGHLDFNSRVYSNEAEYNVIDDVAPNYLKLKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENAPLQNWTLKNAKFIFLNAPLYQSTAQDR

NCBI Accession YP_009666510.1
Location 1993-2385
Gene Name AC4
Protein Name AC4
Coding Region ATGAAGCTCTTCAAATGCTTCAACATCTGTCCTGGTCGATCGTCAAACCCACGTACATCAGAGTCGCCAGAGAGGAACATTCCGACGGGTTCCCGCACTTACACTGCCTTGTACAACTATCCGGTAAGCCCAACATCAAGGATGTTAGATTTTTCGACCTTACTCACCCCAGACGGTCTGCCCGTTTTCACCCAAACATTCAGGCAGCCAAAGACACCAATGCCGTCAAGAATTACATCACCAAAGAGGGTGATTATTGTGAATCCGGGCAATATAAAGTGTCTGGGGGTTCCAAATCAAATAAAGAAGTCGTCTATTATAACGCCATCAATGCAGGAAGTGCGGGAGAGGCTCTCGACATTATCAAGGTCGGAGATCCAAAGACGTTCGTAG
Protein Sequence MKLFKCFNICPGRSSNPRTSESPERNIPTGSRTYTALYNYPVSPTSRMLDFSTLLTPDGLPVFTQTFRQPKTPMPSRITSPKRVIIVNPGNIKCLGVPNQIKKSSIITPSMQEVRERLSTLSRSEIQRRS

References More References in PubMed

1

Genetic analysis of resistance to bean leaf crumple virus identifies a candidate LRR-RLK gene.

Ariza-Suarez D, et al.  Plant J. 2023 Apr;114(1):23-38. doi: 10.1111/tpj.15810. Epub 2023 Feb 22.

PMID: 35574650
2

Complete genome sequence of bean leaf crumple virus, a novel begomovirus infecting common bean in Colombia.

Carvajal-Yepes M, et al.  Arch Virol. 2017 Jun;162(6):1773-1776. doi: 10.1007/s00705-017-3271-y. Epub 2017 Feb 10.

PMID: 28188374
3

Cucurbit leaf crumple virus Identified in Common Bean in Florida.

Adkins S, et al.  Plant Dis. 2009 Mar;93(3):320. doi: 10.1094/PDIS-93-3-0320B.

PMID: 30764208
4

Microneedle assisted delivery of the cloned components of cucurbit leaf crumple virus in yellow squash (Cucurbita pepo).

Kavalappara SR, et al.  J Virol Methods. 2024 Sep;329:114992. doi: 10.1016/j.jviromet.2024.114992. Epub 2024 Jun 25.

PMID: 38936512
5

Evidence of local evolution of tomato-infecting begomovirus species in West Africa: characterization of tomato leaf curl Mali virus and tomato yellow leaf crumple virus from Mali.

Zhou YC, et al.  Arch Virol. 2008;153(4):693-706. doi: 10.1007/s00705-008-0042-9. Epub 2008 Feb 16.

PMID: 18278427
6

Cotton leaf crumple virus Is a Distinct Western Hemisphere Begomovirus Species with Complex Evolutionary Relationships Indicative of Recombination and Reassortment.

Idris AM, et al.  Phytopathology. 2004 Oct;94(10):1068-74. doi: 10.1094/PHYTO.2004.94.10.1068.

PMID: 18943795
7

First Report of Tomato yellow leaf curl virus Infecting Common Bean in China.

Ji YH, et al.  Plant Dis. 2012 Aug;96(8):1229. doi: 10.1094/PDIS-03-12-0258-PDN.

PMID: 30727082
8

Resistance to Monopartite Begomoviruses Associated with the Bean Leaf Crumple Disease in Phaseolus vulgaris Controlled by a Single Dominant Gene.

Monci F, et al.  Phytopathology. 2005 Jul;95(7):819-26. doi: 10.1094/PHYTO-95-0819.

PMID: 18943015
9

First Report of Tomato yellow leaf curl virus Infecting Common Bean (Phaseolus vulgaris) in Greece.

Papayiannis LC, et al.  Plant Dis. 2007 Apr;91(4):465. doi: 10.1094/PDIS-91-4-0465C.

PMID: 30781210
10

Melon chlorotic leaf curl virus: characterization and differential reassortment with closest relatives reveal adaptive virulence in the squash leaf curl virus clade and host shifting by the host-restricted bean calico mosaic virus.

Idris AM, et al.  J Virol. 2008 Feb;82(4):1959-67. doi: 10.1128/JVI.01992-07. Epub 2007 Dec 5.

PMID: 18057231