Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_004787795.1 |
Isolate | Colombia |
Release date | 2019/6/28 |
Submitter | Carvajal-Yepes,M., Zambrano,L., Bueno,J.M., Raatz,B., Cuellar,W.J. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_009666506.1 |
---|---|
Location | 187-942 |
Gene Name | AV1 |
Protein Name | coat protein |
Coding Region | ATGGTGAAGAGGGATGCCCCATGGCGTAATATGGCGGGGACCTCGAAGGTTAGCCGCAACGTCAATTATTCACCTCGTAGTGGATTGGGCTTTCAATCCAACAAGGCCGCTGCTTGGGTGAACAGGCCCATGTACAGGAAGCCCCGGATATATCGAATGTACAGAACCCCCGATGTGCCCAAGGGCTGTGAGGGCCCTTGCAAGGTCCAGTCTTACGAGCAGCGGCATGATATATCTCATGTTGGGAAGGTGATGTGTATTTCCGACGTCACACGTGGAAATGGTATCACTCACCGCGTTGGTAAGCGTTTTTGTGTTAAGTCTGTGTACATACTAGGCAAGATATGGATGGACGAGAACATCAAGCTCAAGAACCACACAAACAGTGTCATGTTTTGGTTGGTCAGAGATCGTAGACCGTATGGCACCCCTATGGAATTTGGTCAGGTGTTCAACATGTTCGATAATGAGCCCAGTACAGCCACTGTTAAGAACGATCTTCGTGATCGTTATCAGGTTATGCACAAGTTCTATGCTAAGGTGACTGGTGGACAATATGCGAGCAATGAACAGGCGCTGGTCAAGCGGTTTTGGAAAGTAAACAATCATGTGGTGTACAACCACCAGGAAGCAGGGAAATACGAGAATCATACGGAGAACGCTTTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCGACATTGAAAATTCGGATCTATTTTTACGATTCGATAACCAATTAA |
Protein Sequence | MVKRDAPWRNMAGTSKVSRNVNYSPRSGLGFQSNKAAAWVNRPMYRKPRIYRMYRTPDVPKGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMEFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
NCBI Accession | YP_009666507.1 |
---|---|
Location | 939-1337 |
Gene Name | AC3 |
Protein Name | replication enhancement protein |
Coding Region | ATGGATTCACGCACAGGGGAGAGCATCACTGCGCATCAAGCAGAGAATTCCGTTTTTATCTGGGAGGTTCCAAATCCCCTCTATTTCAAGATGAACCTCGTCGAGGATCCACTATACACAAGGACAAGGATATATCACATCCAAGTCCGATTCAACCACAACCTCAGGAAGGAGCTGGGTCTACACAAAGCATTCCTGAACTTCCAAGTTTGGACAACATTAGTTCGGGCTTCTGGGACGACATATTTAAATCGCTTTAGATATTTAGTCTTGTTGTATTTGGATAGGATTGGCGTTATCGGTATTAACAATGTAATAAGAGCTGTTCGTTTTGCAACAGACAAATCTTATGTAAATTATATACTCGAGAATCATGAAATAAAATTCAAGTTTTATTAA |
Protein Sequence | MDSRTGESITAHQAENSVFIWEVPNPLYFKMNLVEDPLYTRTRIYHIQVRFNHNLRKELGLHKAFLNFQVWTTLVRASGTTYLNRFRYLVLLYLDRIGVIGINNVIRAVRFATDKSYVNYILENHEIKFKFY |
NCBI Accession | YP_009666508.1 |
---|---|
Location | 1078-1602 |
Gene Name | AC2 |
Protein Name | transactivator protein |
Coding Region | ATGGAAAGCCGGTTCAAATTAAAGGTGGAATCCCATCAATCGTGCTGTGCAATCCAGGCGAGGGGGCCAGTTATAAAGATTTTCTCGACAAAGAGGAAAATGCACCACTACAAAACTGGACTCTCAAAAATGCAAAATTCATCTTCCTCAACGCCCCCCTCTATCAAAGCACAGCACAGGATCGCTAAAAGAAGACCCATTCGTCGAAGAAGGATAGACTTGAACTGCGGCTGTTCCATATTCCTCCATATCAACTGTGCAGACAATGGATTCACGCACAGGGGAGAGCATCACTGCGCATCAAGCAGAGAATTCCGTTTTTATCTGGGAGGTTCCAAATCCCCTCTATTTCAAGATGAACCTCGTCGAGGATCCACTATACACAAGGACAAGGATATATCACATCCAAGTCCGATTCAACCACAACCTCAGGAAGGAGCTGGGTCTACACAAAGCATTCCTGAACTTCCAAGTTTGGACAACATTAGTTCGGGCTTCTGGGACGACATATTTAAATCGCTTTAG |
Protein Sequence | MESRFKLKVESHQSCCAIQARGPVIKIFSTKRKMHHYKTGLSKMQNSSSSTPPSIKAQHRIAKRRPIRRRRIDLNCGCSIFLHINCADNGFTHRGEHHCASSREFRFYLGGSKSPLFQDEPRRGSTIHKDKDISHPSPIQPQPQEGAGSTQSIPELPSLDNISSGFWDDIFKSL |
NCBI Accession | YP_009666509.1 |
---|---|
Location | 1415-2464 |
Gene Name | AC1 |
Protein Name | replication associated protein |
Coding Region | ATGCCACGGAACACCAGTTCATTTCGTTTAGTAGCCAAAAACATTTTCTTAACATATCCCCAGTGCGACATATCGAAAGATGAAGCTCTTCAAATGCTTCAACATCTGTCCTGGTCGATCGTCAAACCCACGTACATCAGAGTCGCCAGAGAGGAACATTCCGACGGGTTCCCGCACTTACACTGCCTTGTACAACTATCCGGTAAGCCCAACATCAAGGATGTTAGATTTTTCGACCTTACTCACCCCAGACGGTCTGCCCGTTTTCACCCAAACATTCAGGCAGCCAAAGACACCAATGCCGTCAAGAATTACATCACCAAAGAGGGTGATTATTGTGAATCCGGGCAATATAAAGTGTCTGGGGGTTCCAAATCAAATAAAGAAGTCGTCTATTATAACGCCATCAATGCAGGAAGTGCGGGAGAGGCTCTCGACATTATCAAGGTCGGAGATCCAAAGACGTTCGTAGTCAGTTATCATCATGTCAAGGCTAACATCGAGAGCCTATTTCAAAAAGCTCCGGAACCATGGGCTCCTCCGTTTCAACTCTCGTCCTTTACTAACGTTCCGTCTGAGATGCAAGCCTGGGCTGATGATTATTTCGGGAGGGGGGCCGCTGCGCGGACAGATAGACCTATTAGTATATTCATCGAAGGGGATAGTCGAACCGGCAAAACAATGTGGGCACGTGCTCTAGGCCCACATAATTACTTGAGCGGTCACTTGGATTTCAATTCTCGAGTGTATTCCAACGAGGCTGAGTATAACGTTATCGATGACGTTGCGCCCAACTACCTAAAGCTAAAGCACTGGAAAGAATTGATAGGGGCCCAAAAGGACTGGCAATCGAACTGTAAATATGGAAAGCCGGTTCAAATTAAAGGTGGAATCCCATCAATCGTGCTGTGCAATCCAGGCGAGGGGGCCAGTTATAAAGATTTTCTCGACAAAGAGGAAAATGCACCACTACAAAACTGGACTCTCAAAAATGCAAAATTCATCTTCCTCAACGCCCCCCTCTATCAAAGCACAGCACAGGATCGCTAA |
Protein Sequence | MPRNTSSFRLVAKNIFLTYPQCDISKDEALQMLQHLSWSIVKPTYIRVAREEHSDGFPHLHCLVQLSGKPNIKDVRFFDLTHPRRSARFHPNIQAAKDTNAVKNYITKEGDYCESGQYKVSGGSKSNKEVVYYNAINAGSAGEALDIIKVGDPKTFVVSYHHVKANIESLFQKAPEPWAPPFQLSSFTNVPSEMQAWADDYFGRGAAARTDRPISIFIEGDSRTGKTMWARALGPHNYLSGHLDFNSRVYSNEAEYNVIDDVAPNYLKLKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENAPLQNWTLKNAKFIFLNAPLYQSTAQDR |
NCBI Accession | YP_009666510.1 |
---|---|
Location | 1993-2385 |
Gene Name | AC4 |
Protein Name | AC4 |
Coding Region | ATGAAGCTCTTCAAATGCTTCAACATCTGTCCTGGTCGATCGTCAAACCCACGTACATCAGAGTCGCCAGAGAGGAACATTCCGACGGGTTCCCGCACTTACACTGCCTTGTACAACTATCCGGTAAGCCCAACATCAAGGATGTTAGATTTTTCGACCTTACTCACCCCAGACGGTCTGCCCGTTTTCACCCAAACATTCAGGCAGCCAAAGACACCAATGCCGTCAAGAATTACATCACCAAAGAGGGTGATTATTGTGAATCCGGGCAATATAAAGTGTCTGGGGGTTCCAAATCAAATAAAGAAGTCGTCTATTATAACGCCATCAATGCAGGAAGTGCGGGAGAGGCTCTCGACATTATCAAGGTCGGAGATCCAAAGACGTTCGTAG |
Protein Sequence | MKLFKCFNICPGRSSNPRTSESPERNIPTGSRTYTALYNYPVSPTSRMLDFSTLLTPDGLPVFTQTFRQPKTPMPSRITSPKRVIIVNPGNIKCLGVPNQIKKSSIITPSMQEVRERLSTLSRSEIQRRS |
1 |
Genetic analysis of resistance to bean leaf crumple virus identifies a candidate LRR-RLK gene. Ariza-Suarez D, et al. Plant J. 2023 Apr;114(1):23-38. doi: 10.1111/tpj.15810. Epub 2023 Feb 22. PMID: 35574650 |
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2 |
Carvajal-Yepes M, et al. Arch Virol. 2017 Jun;162(6):1773-1776. doi: 10.1007/s00705-017-3271-y. Epub 2017 Feb 10. PMID: 28188374 |
3 |
Cucurbit leaf crumple virus Identified in Common Bean in Florida. Adkins S, et al. Plant Dis. 2009 Mar;93(3):320. doi: 10.1094/PDIS-93-3-0320B. PMID: 30764208 |
4 |
Kavalappara SR, et al. J Virol Methods. 2024 Sep;329:114992. doi: 10.1016/j.jviromet.2024.114992. Epub 2024 Jun 25. PMID: 38936512 |
5 |
Zhou YC, et al. Arch Virol. 2008;153(4):693-706. doi: 10.1007/s00705-008-0042-9. Epub 2008 Feb 16. PMID: 18278427 |
6 |
First Report of Tomato yellow leaf curl virus Infecting Common Bean in China. Ji YH, et al. Plant Dis. 2012 Aug;96(8):1229. doi: 10.1094/PDIS-03-12-0258-PDN. PMID: 30727082 |
7 |
Idris AM, et al. Phytopathology. 2004 Oct;94(10):1068-74. doi: 10.1094/PHYTO.2004.94.10.1068. PMID: 18943795 |
8 |
Monci F, et al. Phytopathology. 2005 Jul;95(7):819-26. doi: 10.1094/PHYTO-95-0819. PMID: 18943015 |
9 |
First Report of Tomato yellow leaf curl virus Infecting Common Bean (Phaseolus vulgaris) in Greece. Papayiannis LC, et al. Plant Dis. 2007 Apr;91(4):465. doi: 10.1094/PDIS-91-4-0465C. PMID: 30781210 |
10 |
Navas-Castillo J, et al. Plant Dis. 1999 Jan;83(1):29-32. doi: 10.1094/PDIS.1999.83.1.29. PMID: 30845435 |