Soybean mild mottle virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_000888375.1 |
| Isolate | Nigeria |
| Release date | 2015/2/22 |
| Submitter | Alabi,O.J., Kumar,P.L., Mgbechi-Ezeri,J.U., Naidu,R.A. |
| Host | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_014140
Gene Information
| NCBI Accession | YP_003622548.1 |
|---|---|
| Location | 139-507 |
| Gene Name | V2 |
| Protein Name | pre-coat protein |
| Coding Region | ATGTGGGATCCTCTGCAGAACCCGTTTCCCCATACCGTACACGGTCTTCGATGTATGCTTGCGATAAAGTACGTGCAATTGGTGATTGACACGTACCCCCAAGACAGTATAGGCGAGGATCTATTGCGCCAGATTATTCAGATATTGAGGTGCAGGAACCATGACCAAGCGGAGTTTCGATACAGCATTCTCTTCGCCGATGTCGAACGTACGGAGAAGACTCAGCTTCGCAACCCCTATGGCACTACCTGCACCTGCCGTTTCTGTCCCAAACACGTACAAGCGAAGAGCTTGGAGGAACCGACCCATGTACAGGAAGCCCAGAATTTACAGGATGTATCGTTCGAGAGATGTTCCAAAGGGGTGTGA |
| Protein Sequence | MWDPLQNPFPHTVHGLRCMLAIKYVQLVIDTYPQDSIGEDLLRQIIQILRCRNHDQAEFRYSILFADVERTEKTQLRNPYGTTCTCRFCPKHVQAKSLEEPTHVQEAQNLQDVSFERCSKGV |
| NCBI Accession | YP_003622549.1 |
|---|---|
| Location | 299-1072 |
| Gene Name | V1 |
| Protein Name | coat protein |
| Coding Region | ATGACCAAGCGGAGTTTCGATACAGCATTCTCTTCGCCGATGTCGAACGTACGGAGAAGACTCAGCTTCGCAACCCCTATGGCACTACCTGCACCTGCCGTTTCTGTCCCAAACACGTACAAGCGAAGAGCTTGGAGGAACCGACCCATGTACAGGAAGCCCAGAATTTACAGGATGTATCGTTCGAGAGATGTTCCAAAGGGGTGTGAAGGTCCTTGTAAGGTTCAGTCTTACGATCAGCGGTTCGACTGTAAGCACACGGGCAGTGTGCTGTGTGTTTCAGATATTACTCGCGGAACTGGTCTTACCCATCGTGTTGGTAAGCGTTTCTGCATAAAATCCATGATGTTCAAAGGTAAAGTCTGGATGGACGACAACATCAAGGCTAAGAGCCATACGAATCACGTAATGTTTTTCTTGGTACGTGATAGAAGGCCTTATGGCTCCCCCATGGATTTTGGTCAGGTGTTCAACATGTTTGACAATGAGCCCAGTACTGCTACAGTTAAGCAGGATTATCGAGACCGTTTTCAGGTCATGAGACGATGGTACGTAGGAGTCACCGGTGGTCAGTATGCGTCGAAGGAACAGGCGTTAGTTAATAAGTTTTTTTATTGTAACAATTATGTTGTTTACAATCACCAGGAGGCTGGAAAGTACGAGAACCACACTGAGAACGCATTGTTATTGTATATGGCATGTACTCATGCCTCAAATCCAGTGTATGCAACTCTAAAAATACGGGTCTATTTTTATGACTCAATCAGCAATTAA |
| Protein Sequence | MTKRSFDTAFSSPMSNVRRRLSFATPMALPAPAVSVPNTYKRRAWRNRPMYRKPRIYRMYRSRDVPKGCEGPCKVQSYDQRFDCKHTGSVLCVSDITRGTGLTHRVGKRFCIKSMMFKGKVWMDDNIKAKSHTNHVMFFLVRDRRPYGSPMDFGQVFNMFDNEPSTATVKQDYRDRFQVMRRWYVGVTGGQYASKEQALVNKFFYCNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRVYFYDSISN |
| NCBI Accession | YP_003622550.1 |
|---|---|
| Location | 1069-1473 |
| Gene Name | C3 |
| Protein Name | replication enhancer |
| Coding Region | ATGGATTCTCGCACAGGGGAGTTACTCACACAATCGGAACTAGAGCGTGGCGTGTATATCTGGGAGGTGAACAATCCCCTCTGTTTCAAACTCCTCCGGGAAGACTATGGGGTGATGGGTCTCCCATACGACGAGATGAACATTCGAATAATGTTCAACAACTGTGTCAAGAGGAAGTTGGAGATTCACAAATGCTTCCTGGATTTAAAGATCTTTCTCCACTCACAGAGTCAGAACTGGAGATTTTTTCGAGCTTTCAAGTTTTTAATGATGTCGTTCTTGAATAGTATAGGTTCAATTTCTATTTTAAGTGTCCAGACTGCTATCAACAAAGTATTGCTTGAGCAGTTCGTCATTGTATCCCATTTCGAGATTAAATATGATATAAAATTCAATCTTTATTAA |
| Protein Sequence | MDSRTGELLTQSELERGVYIWEVNNPLCFKLLREDYGVMGLPYDEMNIRIMFNNCVKRKLEIHKCFLDLKIFLHSQSQNWRFFRAFKFLMMSFLNSIGSISILSVQTAINKVLLEQFVIVSHFEIKYDIKFNLY |
| NCBI Accession | YP_003622551.1 |
|---|---|
| Location | 1187-1624 |
| Gene Name | C2 |
| Protein Name | transcriptional activator protein |
| Coding Region | ATGCGATCTTCTACACCCTCGAAGAGCCACTGTTCTCCACCGAACATCAAGGCTCAACATAGGGACGCAAAGCGTCATAGGGCGACTAGACGGCGTCGCATAGACTGTCCTTGTGGGTGTTCTATATACGTTCACCTCGACTGCACAGACCATGGATTCTCGCACAGGGGAGTTACTCACACAATCGGAACTAGAGCGTGGCGTGTATATCTGGGAGGTGAACAATCCCCTCTGTTTCAAACTCCTCCGGGAAGACTATGGGGTGATGGGTCTCCCATACGACGAGATGAACATTCGAATAATGTTCAACAACTGTGTCAAGAGGAAGTTGGAGATTCACAAATGCTTCCTGGATTTAAAGATCTTTCTCCACTCACAGAGTCAGAACTGGAGATTTTTTCGAGCTTTCAAGTTTTTAATGATGTCGTTCTTGAATAG |
| Protein Sequence | MRSSTPSKSHCSPPNIKAQHRDAKRHRATRRRRIDCPCGCSIYVHLDCTDHGFSHRGVTHTIGTRAWRVYLGGEQSPLFQTPPGRLWGDGSPIRRDEHSNNVQQLCQEEVGDSQMLPGFKDLSPLTESELEIFSSFQVFNDVVLE |
| NCBI Accession | YP_003622552.1 |
|---|---|
| Location | 1563-2612 |
| Gene Name | C1 |
| Protein Name | replication-associated protein |
| Coding Region | ATGCCCCGGAGTGGTTATTTTTGTGTGAAGGCAAAGAACATTTTCCTCACATATCCCAGATGTTCTCTCACAAAAGAAGAAGCACTTTCACAATTGCAGAGCATTCAATGTCCATCTAACAAGAAGTTCATCAAGATAGCTCGTGAACTACACGAGAATGGGGAACCACATCTCCATGTGCTTATCCAGTTTGAAGGAAAGTGTCAAATTACGAACGAAAGACACTTCGACCTCACTTCCCCAAGAAGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGTTCGGACGTCAAAACATACATCGACAAAGACGGAGACACCATACAATGGGGGTCTTTCCAGATTGATGGTCGAAGTGCCAGAGGAGGTTGCAAAAATGCTAACGACGCATGTGCGTCGGCATTAAATGCTGGTTCCGCTGAAGCTGCTTTACAGATCATCAAAGAGCAGCTTCCACGAGATTATGTTTTTCAGTATCATAATGTTATTAGCAACCTCAATAAGATTTTTACGCCTCCAACGACGATTTACAAATCGCCTTTTAAAGTTGAACAATTTAACAATGTGCCGGAAGTTCTGTCTCAATGGGCATCAGATAATGTGAAAGCTTCCGCTGCGCGGCCGATGAGACCCATAAGCATCGTCCTGGAAGGTGAATCCAGGACGGGGAAGACGATGTGGGCCAGAAGCCTTGGTAGGCACAATTACCTATGTGGTCATTTAGATCTCAGCGCCAAGGTCTATTCAAACGATGCCTGGTACAACGTCATCGATGACGTAGATCCCCACTATCTAAAGCATATGAAAGAATTCATGGGGTCCCAAAGAGACTGGCAAAGCAACGTGAAGTACGGCAAGCCCACTCAAATTAAAGGTGGAATACCAACAATTTTCCTCTGCAATCCTGGCCCCAGATCTTCCTATAAAGAATATATGGATGAGGAGTCGAATGCAGCGCTTAAGGAGTGGGCTTTAAAAAATGCGATCTTCTACACCCTCGAAGAGCCACTGTTCTCCACCGAACATCAAGGCTCAACATAG |
| Protein Sequence | MPRSGYFCVKAKNIFLTYPRCSLTKEEALSQLQSIQCPSNKKFIKIARELHENGEPHLHVLIQFEGKCQITNERHFDLTSPRRSTHFHPNIQGAKSSSDVKTYIDKDGDTIQWGSFQIDGRSARGGCKNANDACASALNAGSAEAALQIIKEQLPRDYVFQYHNVISNLNKIFTPPTTIYKSPFKVEQFNNVPEVLSQWASDNVKASAARPMRPISIVLEGESRTGKTMWARSLGRHNYLCGHLDLSAKVYSNDAWYNVIDDVDPHYLKHMKEFMGSQRDWQSNVKYGKPTQIKGGIPTIFLCNPGPRSSYKEYMDEESNAALKEWALKNAIFYTLEEPLFSTEHQGST |
| NCBI Accession | YP_003622553.1 |
|---|---|
| Location | 2198-2455 |
| Gene Name | C4 |
| Protein Name | C4 protein |
| Coding Region | ATGGGGAACCACATCTCCATGTGCTTATCCAGTTTGAAGGAAAGTGTCAAATTACGAACGAAAGACACTTCGACCTCACTTCCCCAAGAAGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGTTCGGACGTCAAAACATACATCGACAAAGACGGAGACACCATACAATGGGGGTCTTTCCAGATTGATGGTCGAAGTGCCAGAGGAGGTTGCAAAAATGCTAACGACGCATGTGCGTCGGCATTAA |
| Protein Sequence | MGNHISMCLSSLKESVKLRTKDTSTSLPQEGQHISIRTFRELNQVRTSKHTSTKTETPYNGGLSRLMVEVPEEVAKMLTTHVRRH |
References More References in PubMed
| 1 |
Effects of cowpea mild mottle virus on soybean cultivars in Brazil. Barreto da Silva F, et al. PeerJ. 2020 Aug 31;8:e9828. doi: 10.7717/peerj.9828. eCollection 2020. PMID: 32944424 |
|---|---|
| 2 |
Wei Z, et al. Front Microbiol. 2021 Apr 8;12:650773. doi: 10.3389/fmicb.2021.650773. eCollection 2021. PMID: 33897664 |
| 3 |
Molecular variability of cowpea mild mottle virus infecting soybean in Brazil. Zanardo LG, et al. Arch Virol. 2014 Apr;159(4):727-37. doi: 10.1007/s00705-013-1879-0. Epub 2013 Oct 19. PMID: 24142270 |
| 4 |
Construction of a full-length infectious cDNA clone of Cowpea mild mottle virus. Carvalho SL, et al. Virus Genes. 2017 Feb;53(1):137-140. doi: 10.1007/s11262-016-1395-x. Epub 2016 Oct 11. PMID: 27730428 |
| 5 |
Sandra N, et al. Virus Res. 2017 Mar 15;232:96-105. doi: 10.1016/j.virusres.2017.02.006. Epub 2017 Feb 17. PMID: 28215614 |
| 6 |
Sandra N, et al. 3 Biotech. 2021 Aug;11(8):381. doi: 10.1007/s13205-021-02925-2. Epub 2021 Jul 25. PMID: 34458057 |
| 7 |
Diagnosis of a new variant of soybean yellow mottle mosaic virus with extended host-range in India. Sandra N, et al. Virusdisease. 2015 Dec;26(4):304-14. doi: 10.1007/s13337-015-0288-2. Epub 2015 Nov 23. PMID: 26645042 |
| 8 |
Yang S, et al. Pathogens. 2022 Mar 30;11(4):419. doi: 10.3390/pathogens11040419. PMID: 35456094 |
| 9 |
Zanardo LG, et al. Virus Res. 2021 Oct 2;303:198389. doi: 10.1016/j.virusres.2021.198389. Epub 2021 Mar 11. PMID: 33716182 |
| 10 |
Detection and some properties of cowpea mild mottle virus isolated from soybean in Iran. Tavassoli M, et al. Pak J Biol Sci. 2008 Dec 1;11(23):2624-8. doi: 10.3923/pjbs.2008.2624.2628. PMID: 19630214 |