Soybean mild mottle virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000888375.1
Isolate Nigeria
Release date 2015/2/22
Submitter Alabi,O.J., Kumar,P.L., Mgbechi-Ezeri,J.U., Naidu,R.A.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_014140
ACAGGGATGGCCGCGCCCGCCCCCCCTTTATTGTGGCGCCCACATCTTTGATTTCAGCCAATCAGGAAGCAGCCTCAATCCTTATTTATCTGTTTCTCCACTATAAACTTGTTGCGCAAGTTGGTATTTGAATTAAAGATGTGGGATCCTCTGCAGAACCCGTTTCCCCATACCGTACACGGTCTTCGATGTATGCTTGCGATAAAGTACGTGCAATTGGTGATTGACACGTACCCCCAAGACAGTATAGGCGAGGATCTATTGCGCCAGATTATTCAGATATTGAGGTGCAGGAACCATGACCAAGCGGAGTTTCGATACAGCATTCTCTTCGCCGATGTCGAACGTACGGAGAAGACTCAGCTTCGCAACCCCTATGGCACTACCTGCACCTGCCGTTTCTGTCCCAAACACGTACAAGCGAAGAGCTTGGAGGAACCGACCCATGTACAGGAAGCCCAGAATTTACAGGATGTATCGTTCGAGAGATGTTCCAAAGGGGTGTGAAGGTCCTTGTAAGGTTCAGTCTTACGATCAGCGGTTCGACTGTAAGCACACGGGCAGTGTGCTGTGTGTTTCAGATATTACTCGCGGAACTGGTCTTACCCATCGTGTTGGTAAGCGTTTCTGCATAAAATCCATGATGTTCAAAGGTAAAGTCTGGATGGACGACAACATCAAGGCTAAGAGCCATACGAATCACGTAATGTTTTTCTTGGTACGTGATAGAAGGCCTTATGGCTCCCCCATGGATTTTGGTCAGGTGTTCAACATGTTTGACAATGAGCCCAGTACTGCTACAGTTAAGCAGGATTATCGAGACCGTTTTCAGGTCATGAGACGATGGTACGTAGGAGTCACCGGTGGTCAGTATGCGTCGAAGGAACAGGCGTTAGTTAATAAGTTTTTTTATTGTAACAATTATGTTGTTTACAATCACCAGGAGGCTGGAAAGTACGAGAACCACACTGAGAACGCATTGTTATTGTATATGGCATGTACTCATGCCTCAAATCCAGTGTATGCAACTCTAAAAATACGGGTCTATTTTTATGACTCAATCAGCAATTAATAAAGATTGAATTTTATATCATATTTAATCTCGAAATGGGATACAATGACGAACTGCTCAAGCAATACTTTGTTGATAGCAGTCTGGACACTTAAAATAGAAATTGAACCTATACTATTCAAGAACGACATCATTAAAAACTTGAAAGCTCGAAAAAATCTCCAGTTCTGACTCTGTGAGTGGAGAAAGATCTTTAAATCCAGGAAGCATTTGTGAATCTCCAACTTCCTCTTGACACAGTTGTTGAACATTATTCGAATGTTCATCTCGTCGTATGGGAGACCCATCACCCCATAGTCTTCCCGGAGGAGTTTGAAACAGAGGGGATTGTTCACCTCCCAGATATACACGCCACGCTCTAGTTCCGATTGTGTGAGTAACTCCCCTGTGCGAGAATCCATGGTCTGTGCAGTCGAGGTGAACGTATATAGAACACCCACAAGGACAGTCTATGCGACGCCGTCTAGTCGCCCTATGACGCTTTGCGTCCCTATGTTGAGCCTTGATGTTCGGTGGAGAACAGTGGCTCTTCGAGGGTGTAGAAGATCGCATTTTTTAAAGCCCACTCCTTAAGCGCTGCATTCGACTCCTCATCCATATATTCTTTATAGGAAGATCTGGGGCCAGGATTGCAGAGGAAAATTGTTGGTATTCCACCTTTAATTTGAGTGGGCTTGCCGTACTTCACGTTGCTTTGCCAGTCTCTTTGGGACCCCATGAATTCTTTCATATGCTTTAGATAGTGGGGATCTACGTCATCGATGACGTTGTACCAGGCATCGTTTGAATAGACCTTGGCGCTGAGATCTAAATGACCACATAGGTAATTGTGCCTACCAAGGCTTCTGGCCCACATCGTCTTCCCCGTCCTGGATTCACCTTCCAGGACGATGCTTATGGGTCTCATCGGCCGCGCAGCGGAAGCTTTCACATTATCTGATGCCCATTGAGACAGAACTTCCGGCACATTGTTAAATTGTTCAACTTTAAAAGGCGATTTGTAAATCGTCGTTGGAGGCGTAAAAATCTTATTGAGGTTGCTAATAACATTATGATACTGAAAAACATAATCTCGTGGAAGCTGCTCTTTGATGATCTGTAAAGCAGCTTCAGCGGAACCAGCATTTAATGCCGACGCACATGCGTCGTTAGCATTTTTGCAACCTCCTCTGGCACTTCGACCATCAATCTGGAAAGACCCCCATTGTATGGTGTCTCCGTCTTTGTCGATGTATGTTTTGACGTCCGAACTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGACCTTCTTGGGGAAGTGAGGTCGAAGTGTCTTTCGTTCGTAATTTGACACTTTCCTTCAAACTGGATAAGCACATGGAGATGTGGTTCCCCATTCTCGTGTAGTTCACGAGCTATCTTGATGAACTTCTTGTTAGATGGACATTGAATGCTCTGCAATTGTGAAAGTGCTTCTTCTTTTGTGAGAGAACATCTGGGATATGTGAGGAAAATGTTCTTTGCCTTCACACAAAAATAACCACTCCGGGGCATATCGGTAAAAGCAAATGTACCCCCAATTGCCCCCCCCTTCTAAAACTCTATACAATTGGGGGTAATGGGGGTGAATATATACCTACTACTATTAAATTCTCTTTAGCGAGGATTTCAAATCCGCCACGTGTACAAAAGGCCATCCCTTATAATATT

Gene Information

NCBI Accession YP_003622548.1
Location 139-507
Gene Name V2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCTCTGCAGAACCCGTTTCCCCATACCGTACACGGTCTTCGATGTATGCTTGCGATAAAGTACGTGCAATTGGTGATTGACACGTACCCCCAAGACAGTATAGGCGAGGATCTATTGCGCCAGATTATTCAGATATTGAGGTGCAGGAACCATGACCAAGCGGAGTTTCGATACAGCATTCTCTTCGCCGATGTCGAACGTACGGAGAAGACTCAGCTTCGCAACCCCTATGGCACTACCTGCACCTGCCGTTTCTGTCCCAAACACGTACAAGCGAAGAGCTTGGAGGAACCGACCCATGTACAGGAAGCCCAGAATTTACAGGATGTATCGTTCGAGAGATGTTCCAAAGGGGTGTGA
Protein Sequence MWDPLQNPFPHTVHGLRCMLAIKYVQLVIDTYPQDSIGEDLLRQIIQILRCRNHDQAEFRYSILFADVERTEKTQLRNPYGTTCTCRFCPKHVQAKSLEEPTHVQEAQNLQDVSFERCSKGV

NCBI Accession YP_003622549.1
Location 299-1072
Gene Name V1
Protein Name coat protein
Coding Region ATGACCAAGCGGAGTTTCGATACAGCATTCTCTTCGCCGATGTCGAACGTACGGAGAAGACTCAGCTTCGCAACCCCTATGGCACTACCTGCACCTGCCGTTTCTGTCCCAAACACGTACAAGCGAAGAGCTTGGAGGAACCGACCCATGTACAGGAAGCCCAGAATTTACAGGATGTATCGTTCGAGAGATGTTCCAAAGGGGTGTGAAGGTCCTTGTAAGGTTCAGTCTTACGATCAGCGGTTCGACTGTAAGCACACGGGCAGTGTGCTGTGTGTTTCAGATATTACTCGCGGAACTGGTCTTACCCATCGTGTTGGTAAGCGTTTCTGCATAAAATCCATGATGTTCAAAGGTAAAGTCTGGATGGACGACAACATCAAGGCTAAGAGCCATACGAATCACGTAATGTTTTTCTTGGTACGTGATAGAAGGCCTTATGGCTCCCCCATGGATTTTGGTCAGGTGTTCAACATGTTTGACAATGAGCCCAGTACTGCTACAGTTAAGCAGGATTATCGAGACCGTTTTCAGGTCATGAGACGATGGTACGTAGGAGTCACCGGTGGTCAGTATGCGTCGAAGGAACAGGCGTTAGTTAATAAGTTTTTTTATTGTAACAATTATGTTGTTTACAATCACCAGGAGGCTGGAAAGTACGAGAACCACACTGAGAACGCATTGTTATTGTATATGGCATGTACTCATGCCTCAAATCCAGTGTATGCAACTCTAAAAATACGGGTCTATTTTTATGACTCAATCAGCAATTAA
Protein Sequence MTKRSFDTAFSSPMSNVRRRLSFATPMALPAPAVSVPNTYKRRAWRNRPMYRKPRIYRMYRSRDVPKGCEGPCKVQSYDQRFDCKHTGSVLCVSDITRGTGLTHRVGKRFCIKSMMFKGKVWMDDNIKAKSHTNHVMFFLVRDRRPYGSPMDFGQVFNMFDNEPSTATVKQDYRDRFQVMRRWYVGVTGGQYASKEQALVNKFFYCNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRVYFYDSISN

NCBI Accession YP_003622550.1
Location 1069-1473
Gene Name C3
Protein Name replication enhancer
Coding Region ATGGATTCTCGCACAGGGGAGTTACTCACACAATCGGAACTAGAGCGTGGCGTGTATATCTGGGAGGTGAACAATCCCCTCTGTTTCAAACTCCTCCGGGAAGACTATGGGGTGATGGGTCTCCCATACGACGAGATGAACATTCGAATAATGTTCAACAACTGTGTCAAGAGGAAGTTGGAGATTCACAAATGCTTCCTGGATTTAAAGATCTTTCTCCACTCACAGAGTCAGAACTGGAGATTTTTTCGAGCTTTCAAGTTTTTAATGATGTCGTTCTTGAATAGTATAGGTTCAATTTCTATTTTAAGTGTCCAGACTGCTATCAACAAAGTATTGCTTGAGCAGTTCGTCATTGTATCCCATTTCGAGATTAAATATGATATAAAATTCAATCTTTATTAA
Protein Sequence MDSRTGELLTQSELERGVYIWEVNNPLCFKLLREDYGVMGLPYDEMNIRIMFNNCVKRKLEIHKCFLDLKIFLHSQSQNWRFFRAFKFLMMSFLNSIGSISILSVQTAINKVLLEQFVIVSHFEIKYDIKFNLY

NCBI Accession YP_003622551.1
Location 1187-1624
Gene Name C2
Protein Name transcriptional activator protein
Coding Region ATGCGATCTTCTACACCCTCGAAGAGCCACTGTTCTCCACCGAACATCAAGGCTCAACATAGGGACGCAAAGCGTCATAGGGCGACTAGACGGCGTCGCATAGACTGTCCTTGTGGGTGTTCTATATACGTTCACCTCGACTGCACAGACCATGGATTCTCGCACAGGGGAGTTACTCACACAATCGGAACTAGAGCGTGGCGTGTATATCTGGGAGGTGAACAATCCCCTCTGTTTCAAACTCCTCCGGGAAGACTATGGGGTGATGGGTCTCCCATACGACGAGATGAACATTCGAATAATGTTCAACAACTGTGTCAAGAGGAAGTTGGAGATTCACAAATGCTTCCTGGATTTAAAGATCTTTCTCCACTCACAGAGTCAGAACTGGAGATTTTTTCGAGCTTTCAAGTTTTTAATGATGTCGTTCTTGAATAG
Protein Sequence MRSSTPSKSHCSPPNIKAQHRDAKRHRATRRRRIDCPCGCSIYVHLDCTDHGFSHRGVTHTIGTRAWRVYLGGEQSPLFQTPPGRLWGDGSPIRRDEHSNNVQQLCQEEVGDSQMLPGFKDLSPLTESELEIFSSFQVFNDVVLE

NCBI Accession YP_003622552.1
Location 1563-2612
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGCCCCGGAGTGGTTATTTTTGTGTGAAGGCAAAGAACATTTTCCTCACATATCCCAGATGTTCTCTCACAAAAGAAGAAGCACTTTCACAATTGCAGAGCATTCAATGTCCATCTAACAAGAAGTTCATCAAGATAGCTCGTGAACTACACGAGAATGGGGAACCACATCTCCATGTGCTTATCCAGTTTGAAGGAAAGTGTCAAATTACGAACGAAAGACACTTCGACCTCACTTCCCCAAGAAGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGTTCGGACGTCAAAACATACATCGACAAAGACGGAGACACCATACAATGGGGGTCTTTCCAGATTGATGGTCGAAGTGCCAGAGGAGGTTGCAAAAATGCTAACGACGCATGTGCGTCGGCATTAAATGCTGGTTCCGCTGAAGCTGCTTTACAGATCATCAAAGAGCAGCTTCCACGAGATTATGTTTTTCAGTATCATAATGTTATTAGCAACCTCAATAAGATTTTTACGCCTCCAACGACGATTTACAAATCGCCTTTTAAAGTTGAACAATTTAACAATGTGCCGGAAGTTCTGTCTCAATGGGCATCAGATAATGTGAAAGCTTCCGCTGCGCGGCCGATGAGACCCATAAGCATCGTCCTGGAAGGTGAATCCAGGACGGGGAAGACGATGTGGGCCAGAAGCCTTGGTAGGCACAATTACCTATGTGGTCATTTAGATCTCAGCGCCAAGGTCTATTCAAACGATGCCTGGTACAACGTCATCGATGACGTAGATCCCCACTATCTAAAGCATATGAAAGAATTCATGGGGTCCCAAAGAGACTGGCAAAGCAACGTGAAGTACGGCAAGCCCACTCAAATTAAAGGTGGAATACCAACAATTTTCCTCTGCAATCCTGGCCCCAGATCTTCCTATAAAGAATATATGGATGAGGAGTCGAATGCAGCGCTTAAGGAGTGGGCTTTAAAAAATGCGATCTTCTACACCCTCGAAGAGCCACTGTTCTCCACCGAACATCAAGGCTCAACATAG
Protein Sequence MPRSGYFCVKAKNIFLTYPRCSLTKEEALSQLQSIQCPSNKKFIKIARELHENGEPHLHVLIQFEGKCQITNERHFDLTSPRRSTHFHPNIQGAKSSSDVKTYIDKDGDTIQWGSFQIDGRSARGGCKNANDACASALNAGSAEAALQIIKEQLPRDYVFQYHNVISNLNKIFTPPTTIYKSPFKVEQFNNVPEVLSQWASDNVKASAARPMRPISIVLEGESRTGKTMWARSLGRHNYLCGHLDLSAKVYSNDAWYNVIDDVDPHYLKHMKEFMGSQRDWQSNVKYGKPTQIKGGIPTIFLCNPGPRSSYKEYMDEESNAALKEWALKNAIFYTLEEPLFSTEHQGST

NCBI Accession YP_003622553.1
Location 2198-2455
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGGAACCACATCTCCATGTGCTTATCCAGTTTGAAGGAAAGTGTCAAATTACGAACGAAAGACACTTCGACCTCACTTCCCCAAGAAGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGTTCGGACGTCAAAACATACATCGACAAAGACGGAGACACCATACAATGGGGGTCTTTCCAGATTGATGGTCGAAGTGCCAGAGGAGGTTGCAAAAATGCTAACGACGCATGTGCGTCGGCATTAA
Protein Sequence MGNHISMCLSSLKESVKLRTKDTSTSLPQEGQHISIRTFRELNQVRTSKHTSTKTETPYNGGLSRLMVEVPEEVAKMLTTHVRRH

References More References in PubMed

1

Effects of cowpea mild mottle virus on soybean cultivars in Brazil.

Barreto da Silva F, et al.  PeerJ. 2020 Aug 31;8:e9828. doi: 10.7717/peerj.9828. eCollection 2020.

PMID: 32944424
2

Exploring Bemisia tabaci Middle East-Asia Minor I and Mediterranean Cryptic Species Relationship with Cowpea Mild Mottle Virus and Their Dynamics in Soybean Fields.

Barreto da Silva F, et al.  Insects. 2024 Aug 19;15(8):624. doi: 10.3390/insects15080624.

PMID: 39194828
3

Experimental evolution of cowpea mild mottle virus reveals recombination-driven reduction in virulence accompanied by increases in diversity and viral fitness.

Zanardo LG, et al.  Virus Res. 2021 Oct 2;303:198389. doi: 10.1016/j.virusres.2021.198389. Epub 2021 Mar 11.

PMID: 33716182
4

Seed Transmission of Cowpea Mild Mottle Virus in Common Beans in Brazil.

Pinheiro-Lima B, et al.  Viruses. 2026 Jul 7;18(7):752. doi: 10.3390/v18070752.

PMID: 42515604
5

Identification of a New Genetic Clade of Cowpea Mild Mottle Virus and Characterization of Its Interaction With Soybean Mosaic Virus in Co-infected Soybean.

Wei Z, et al.  Front Microbiol. 2021 Apr 8;12:650773. doi: 10.3389/fmicb.2021.650773. eCollection 2021.

PMID: 33897664
6

Analysis of soybean cultivars response to mosaic and mottle disease caused by soybean yellow mottle mosaic virus.

Srikant M, et al.  Virusdisease. 2025 Mar;36(1):41-47. doi: 10.1007/s13337-024-00905-7. Epub 2025 Jan 23.

PMID: 40290768
7

Quantification of Gammacarmovirus glycinis (Soybean yellow mottle mosaic virus) to evaluate mungbean (Vigna radiata) and soybean (Glycine max) genotypes for resistance to seed transmission.

Sandra N, et al.  3 Biotech. 2025 Jun;15(6):174. doi: 10.1007/s13205-025-04347-w. Epub 2025 May 16.

PMID: 40386632
8

Molecular and biological characterization of soybean yellow mottle mosaic virus severe strain infecting soybean in India.

Sandra N, et al.  3 Biotech. 2021 Aug;11(8):381. doi: 10.1007/s13205-021-02925-2. Epub 2021 Jul 25.

PMID: 34458057
9

Molecular variability of cowpea mild mottle virus infecting soybean in Brazil.

Zanardo LG, et al.  Arch Virol. 2014 Apr;159(4):727-37. doi: 10.1007/s00705-013-1879-0. Epub 2013 Oct 19.

PMID: 24142270
10

Construction of a full-length infectious cDNA clone of Cowpea mild mottle virus.

Carvalho SL, et al.  Virus Genes. 2017 Feb;53(1):137-140. doi: 10.1007/s11262-016-1395-x. Epub 2016 Oct 11.

PMID: 27730428