Soybean mild mottle virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000888375.1
Isolate Nigeria
Release date 2015/2/22
Submitter Alabi,O.J., Kumar,P.L., Mgbechi-Ezeri,J.U., Naidu,R.A.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_014140
ACAGGGATGGCCGCGCCCGCCCCCCCTTTATTGTGGCGCCCACATCTTTGATTTCAGCCAATCAGGAAGCAGCCTCAATCCTTATTTATCTGTTTCTCCACTATAAACTTGTTGCGCAAGTTGGTATTTGAATTAAAGATGTGGGATCCTCTGCAGAACCCGTTTCCCCATACCGTACACGGTCTTCGATGTATGCTTGCGATAAAGTACGTGCAATTGGTGATTGACACGTACCCCCAAGACAGTATAGGCGAGGATCTATTGCGCCAGATTATTCAGATATTGAGGTGCAGGAACCATGACCAAGCGGAGTTTCGATACAGCATTCTCTTCGCCGATGTCGAACGTACGGAGAAGACTCAGCTTCGCAACCCCTATGGCACTACCTGCACCTGCCGTTTCTGTCCCAAACACGTACAAGCGAAGAGCTTGGAGGAACCGACCCATGTACAGGAAGCCCAGAATTTACAGGATGTATCGTTCGAGAGATGTTCCAAAGGGGTGTGAAGGTCCTTGTAAGGTTCAGTCTTACGATCAGCGGTTCGACTGTAAGCACACGGGCAGTGTGCTGTGTGTTTCAGATATTACTCGCGGAACTGGTCTTACCCATCGTGTTGGTAAGCGTTTCTGCATAAAATCCATGATGTTCAAAGGTAAAGTCTGGATGGACGACAACATCAAGGCTAAGAGCCATACGAATCACGTAATGTTTTTCTTGGTACGTGATAGAAGGCCTTATGGCTCCCCCATGGATTTTGGTCAGGTGTTCAACATGTTTGACAATGAGCCCAGTACTGCTACAGTTAAGCAGGATTATCGAGACCGTTTTCAGGTCATGAGACGATGGTACGTAGGAGTCACCGGTGGTCAGTATGCGTCGAAGGAACAGGCGTTAGTTAATAAGTTTTTTTATTGTAACAATTATGTTGTTTACAATCACCAGGAGGCTGGAAAGTACGAGAACCACACTGAGAACGCATTGTTATTGTATATGGCATGTACTCATGCCTCAAATCCAGTGTATGCAACTCTAAAAATACGGGTCTATTTTTATGACTCAATCAGCAATTAATAAAGATTGAATTTTATATCATATTTAATCTCGAAATGGGATACAATGACGAACTGCTCAAGCAATACTTTGTTGATAGCAGTCTGGACACTTAAAATAGAAATTGAACCTATACTATTCAAGAACGACATCATTAAAAACTTGAAAGCTCGAAAAAATCTCCAGTTCTGACTCTGTGAGTGGAGAAAGATCTTTAAATCCAGGAAGCATTTGTGAATCTCCAACTTCCTCTTGACACAGTTGTTGAACATTATTCGAATGTTCATCTCGTCGTATGGGAGACCCATCACCCCATAGTCTTCCCGGAGGAGTTTGAAACAGAGGGGATTGTTCACCTCCCAGATATACACGCCACGCTCTAGTTCCGATTGTGTGAGTAACTCCCCTGTGCGAGAATCCATGGTCTGTGCAGTCGAGGTGAACGTATATAGAACACCCACAAGGACAGTCTATGCGACGCCGTCTAGTCGCCCTATGACGCTTTGCGTCCCTATGTTGAGCCTTGATGTTCGGTGGAGAACAGTGGCTCTTCGAGGGTGTAGAAGATCGCATTTTTTAAAGCCCACTCCTTAAGCGCTGCATTCGACTCCTCATCCATATATTCTTTATAGGAAGATCTGGGGCCAGGATTGCAGAGGAAAATTGTTGGTATTCCACCTTTAATTTGAGTGGGCTTGCCGTACTTCACGTTGCTTTGCCAGTCTCTTTGGGACCCCATGAATTCTTTCATATGCTTTAGATAGTGGGGATCTACGTCATCGATGACGTTGTACCAGGCATCGTTTGAATAGACCTTGGCGCTGAGATCTAAATGACCACATAGGTAATTGTGCCTACCAAGGCTTCTGGCCCACATCGTCTTCCCCGTCCTGGATTCACCTTCCAGGACGATGCTTATGGGTCTCATCGGCCGCGCAGCGGAAGCTTTCACATTATCTGATGCCCATTGAGACAGAACTTCCGGCACATTGTTAAATTGTTCAACTTTAAAAGGCGATTTGTAAATCGTCGTTGGAGGCGTAAAAATCTTATTGAGGTTGCTAATAACATTATGATACTGAAAAACATAATCTCGTGGAAGCTGCTCTTTGATGATCTGTAAAGCAGCTTCAGCGGAACCAGCATTTAATGCCGACGCACATGCGTCGTTAGCATTTTTGCAACCTCCTCTGGCACTTCGACCATCAATCTGGAAAGACCCCCATTGTATGGTGTCTCCGTCTTTGTCGATGTATGTTTTGACGTCCGAACTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGACCTTCTTGGGGAAGTGAGGTCGAAGTGTCTTTCGTTCGTAATTTGACACTTTCCTTCAAACTGGATAAGCACATGGAGATGTGGTTCCCCATTCTCGTGTAGTTCACGAGCTATCTTGATGAACTTCTTGTTAGATGGACATTGAATGCTCTGCAATTGTGAAAGTGCTTCTTCTTTTGTGAGAGAACATCTGGGATATGTGAGGAAAATGTTCTTTGCCTTCACACAAAAATAACCACTCCGGGGCATATCGGTAAAAGCAAATGTACCCCCAATTGCCCCCCCCTTCTAAAACTCTATACAATTGGGGGTAATGGGGGTGAATATATACCTACTACTATTAAATTCTCTTTAGCGAGGATTTCAAATCCGCCACGTGTACAAAAGGCCATCCCTTATAATATT

Gene Information

NCBI Accession YP_003622548.1
Location 139-507
Gene Name V2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCTCTGCAGAACCCGTTTCCCCATACCGTACACGGTCTTCGATGTATGCTTGCGATAAAGTACGTGCAATTGGTGATTGACACGTACCCCCAAGACAGTATAGGCGAGGATCTATTGCGCCAGATTATTCAGATATTGAGGTGCAGGAACCATGACCAAGCGGAGTTTCGATACAGCATTCTCTTCGCCGATGTCGAACGTACGGAGAAGACTCAGCTTCGCAACCCCTATGGCACTACCTGCACCTGCCGTTTCTGTCCCAAACACGTACAAGCGAAGAGCTTGGAGGAACCGACCCATGTACAGGAAGCCCAGAATTTACAGGATGTATCGTTCGAGAGATGTTCCAAAGGGGTGTGA
Protein Sequence MWDPLQNPFPHTVHGLRCMLAIKYVQLVIDTYPQDSIGEDLLRQIIQILRCRNHDQAEFRYSILFADVERTEKTQLRNPYGTTCTCRFCPKHVQAKSLEEPTHVQEAQNLQDVSFERCSKGV

NCBI Accession YP_003622549.1
Location 299-1072
Gene Name V1
Protein Name coat protein
Coding Region ATGACCAAGCGGAGTTTCGATACAGCATTCTCTTCGCCGATGTCGAACGTACGGAGAAGACTCAGCTTCGCAACCCCTATGGCACTACCTGCACCTGCCGTTTCTGTCCCAAACACGTACAAGCGAAGAGCTTGGAGGAACCGACCCATGTACAGGAAGCCCAGAATTTACAGGATGTATCGTTCGAGAGATGTTCCAAAGGGGTGTGAAGGTCCTTGTAAGGTTCAGTCTTACGATCAGCGGTTCGACTGTAAGCACACGGGCAGTGTGCTGTGTGTTTCAGATATTACTCGCGGAACTGGTCTTACCCATCGTGTTGGTAAGCGTTTCTGCATAAAATCCATGATGTTCAAAGGTAAAGTCTGGATGGACGACAACATCAAGGCTAAGAGCCATACGAATCACGTAATGTTTTTCTTGGTACGTGATAGAAGGCCTTATGGCTCCCCCATGGATTTTGGTCAGGTGTTCAACATGTTTGACAATGAGCCCAGTACTGCTACAGTTAAGCAGGATTATCGAGACCGTTTTCAGGTCATGAGACGATGGTACGTAGGAGTCACCGGTGGTCAGTATGCGTCGAAGGAACAGGCGTTAGTTAATAAGTTTTTTTATTGTAACAATTATGTTGTTTACAATCACCAGGAGGCTGGAAAGTACGAGAACCACACTGAGAACGCATTGTTATTGTATATGGCATGTACTCATGCCTCAAATCCAGTGTATGCAACTCTAAAAATACGGGTCTATTTTTATGACTCAATCAGCAATTAA
Protein Sequence MTKRSFDTAFSSPMSNVRRRLSFATPMALPAPAVSVPNTYKRRAWRNRPMYRKPRIYRMYRSRDVPKGCEGPCKVQSYDQRFDCKHTGSVLCVSDITRGTGLTHRVGKRFCIKSMMFKGKVWMDDNIKAKSHTNHVMFFLVRDRRPYGSPMDFGQVFNMFDNEPSTATVKQDYRDRFQVMRRWYVGVTGGQYASKEQALVNKFFYCNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRVYFYDSISN

NCBI Accession YP_003622550.1
Location 1069-1473
Gene Name C3
Protein Name replication enhancer
Coding Region ATGGATTCTCGCACAGGGGAGTTACTCACACAATCGGAACTAGAGCGTGGCGTGTATATCTGGGAGGTGAACAATCCCCTCTGTTTCAAACTCCTCCGGGAAGACTATGGGGTGATGGGTCTCCCATACGACGAGATGAACATTCGAATAATGTTCAACAACTGTGTCAAGAGGAAGTTGGAGATTCACAAATGCTTCCTGGATTTAAAGATCTTTCTCCACTCACAGAGTCAGAACTGGAGATTTTTTCGAGCTTTCAAGTTTTTAATGATGTCGTTCTTGAATAGTATAGGTTCAATTTCTATTTTAAGTGTCCAGACTGCTATCAACAAAGTATTGCTTGAGCAGTTCGTCATTGTATCCCATTTCGAGATTAAATATGATATAAAATTCAATCTTTATTAA
Protein Sequence MDSRTGELLTQSELERGVYIWEVNNPLCFKLLREDYGVMGLPYDEMNIRIMFNNCVKRKLEIHKCFLDLKIFLHSQSQNWRFFRAFKFLMMSFLNSIGSISILSVQTAINKVLLEQFVIVSHFEIKYDIKFNLY

NCBI Accession YP_003622551.1
Location 1187-1624
Gene Name C2
Protein Name transcriptional activator protein
Coding Region ATGCGATCTTCTACACCCTCGAAGAGCCACTGTTCTCCACCGAACATCAAGGCTCAACATAGGGACGCAAAGCGTCATAGGGCGACTAGACGGCGTCGCATAGACTGTCCTTGTGGGTGTTCTATATACGTTCACCTCGACTGCACAGACCATGGATTCTCGCACAGGGGAGTTACTCACACAATCGGAACTAGAGCGTGGCGTGTATATCTGGGAGGTGAACAATCCCCTCTGTTTCAAACTCCTCCGGGAAGACTATGGGGTGATGGGTCTCCCATACGACGAGATGAACATTCGAATAATGTTCAACAACTGTGTCAAGAGGAAGTTGGAGATTCACAAATGCTTCCTGGATTTAAAGATCTTTCTCCACTCACAGAGTCAGAACTGGAGATTTTTTCGAGCTTTCAAGTTTTTAATGATGTCGTTCTTGAATAG
Protein Sequence MRSSTPSKSHCSPPNIKAQHRDAKRHRATRRRRIDCPCGCSIYVHLDCTDHGFSHRGVTHTIGTRAWRVYLGGEQSPLFQTPPGRLWGDGSPIRRDEHSNNVQQLCQEEVGDSQMLPGFKDLSPLTESELEIFSSFQVFNDVVLE

NCBI Accession YP_003622552.1
Location 1563-2612
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGCCCCGGAGTGGTTATTTTTGTGTGAAGGCAAAGAACATTTTCCTCACATATCCCAGATGTTCTCTCACAAAAGAAGAAGCACTTTCACAATTGCAGAGCATTCAATGTCCATCTAACAAGAAGTTCATCAAGATAGCTCGTGAACTACACGAGAATGGGGAACCACATCTCCATGTGCTTATCCAGTTTGAAGGAAAGTGTCAAATTACGAACGAAAGACACTTCGACCTCACTTCCCCAAGAAGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGTTCGGACGTCAAAACATACATCGACAAAGACGGAGACACCATACAATGGGGGTCTTTCCAGATTGATGGTCGAAGTGCCAGAGGAGGTTGCAAAAATGCTAACGACGCATGTGCGTCGGCATTAAATGCTGGTTCCGCTGAAGCTGCTTTACAGATCATCAAAGAGCAGCTTCCACGAGATTATGTTTTTCAGTATCATAATGTTATTAGCAACCTCAATAAGATTTTTACGCCTCCAACGACGATTTACAAATCGCCTTTTAAAGTTGAACAATTTAACAATGTGCCGGAAGTTCTGTCTCAATGGGCATCAGATAATGTGAAAGCTTCCGCTGCGCGGCCGATGAGACCCATAAGCATCGTCCTGGAAGGTGAATCCAGGACGGGGAAGACGATGTGGGCCAGAAGCCTTGGTAGGCACAATTACCTATGTGGTCATTTAGATCTCAGCGCCAAGGTCTATTCAAACGATGCCTGGTACAACGTCATCGATGACGTAGATCCCCACTATCTAAAGCATATGAAAGAATTCATGGGGTCCCAAAGAGACTGGCAAAGCAACGTGAAGTACGGCAAGCCCACTCAAATTAAAGGTGGAATACCAACAATTTTCCTCTGCAATCCTGGCCCCAGATCTTCCTATAAAGAATATATGGATGAGGAGTCGAATGCAGCGCTTAAGGAGTGGGCTTTAAAAAATGCGATCTTCTACACCCTCGAAGAGCCACTGTTCTCCACCGAACATCAAGGCTCAACATAG
Protein Sequence MPRSGYFCVKAKNIFLTYPRCSLTKEEALSQLQSIQCPSNKKFIKIARELHENGEPHLHVLIQFEGKCQITNERHFDLTSPRRSTHFHPNIQGAKSSSDVKTYIDKDGDTIQWGSFQIDGRSARGGCKNANDACASALNAGSAEAALQIIKEQLPRDYVFQYHNVISNLNKIFTPPTTIYKSPFKVEQFNNVPEVLSQWASDNVKASAARPMRPISIVLEGESRTGKTMWARSLGRHNYLCGHLDLSAKVYSNDAWYNVIDDVDPHYLKHMKEFMGSQRDWQSNVKYGKPTQIKGGIPTIFLCNPGPRSSYKEYMDEESNAALKEWALKNAIFYTLEEPLFSTEHQGST

NCBI Accession YP_003622553.1
Location 2198-2455
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGGAACCACATCTCCATGTGCTTATCCAGTTTGAAGGAAAGTGTCAAATTACGAACGAAAGACACTTCGACCTCACTTCCCCAAGAAGGTCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGTTCGGACGTCAAAACATACATCGACAAAGACGGAGACACCATACAATGGGGGTCTTTCCAGATTGATGGTCGAAGTGCCAGAGGAGGTTGCAAAAATGCTAACGACGCATGTGCGTCGGCATTAA
Protein Sequence MGNHISMCLSSLKESVKLRTKDTSTSLPQEGQHISIRTFRELNQVRTSKHTSTKTETPYNGGLSRLMVEVPEEVAKMLTTHVRRH

References More References in PubMed

1

Effects of cowpea mild mottle virus on soybean cultivars in Brazil.

Barreto da Silva F, et al.  PeerJ. 2020 Aug 31;8:e9828. doi: 10.7717/peerj.9828. eCollection 2020.

PMID: 32944424
2

Exploring Bemisia tabaci Middle East-Asia Minor I and Mediterranean Cryptic Species Relationship with Cowpea Mild Mottle Virus and Their Dynamics in Soybean Fields.

Barreto da Silva F, et al.  Insects. 2024 Aug 19;15(8):624. doi: 10.3390/insects15080624.

PMID: 39194828
3

Experimental evolution of cowpea mild mottle virus reveals recombination-driven reduction in virulence accompanied by increases in diversity and viral fitness.

Zanardo LG, et al.  Virus Res. 2021 Oct 2;303:198389. doi: 10.1016/j.virusres.2021.198389. Epub 2021 Mar 11.

PMID: 33716182
4

Identification of a New Genetic Clade of Cowpea Mild Mottle Virus and Characterization of Its Interaction With Soybean Mosaic Virus in Co-infected Soybean.

Wei Z, et al.  Front Microbiol. 2021 Apr 8;12:650773. doi: 10.3389/fmicb.2021.650773. eCollection 2021.

PMID: 33897664
5

Molecular variability of cowpea mild mottle virus infecting soybean in Brazil.

Zanardo LG, et al.  Arch Virol. 2014 Apr;159(4):727-37. doi: 10.1007/s00705-013-1879-0. Epub 2013 Oct 19.

PMID: 24142270
6

Synonymous Codon Pattern of Cowpea Mild Mottle Virus Sheds Light on Its Host Adaptation and Genome Evolution.

Yang S, et al.  Pathogens. 2022 Mar 30;11(4):419. doi: 10.3390/pathogens11040419.

PMID: 35456094
7

Molecular and biological characterization of soybean yellow mottle mosaic virus severe strain infecting soybean in India.

Sandra N, et al.  3 Biotech. 2021 Aug;11(8):381. doi: 10.1007/s13205-021-02925-2. Epub 2021 Jul 25.

PMID: 34458057
8

The C-Terminal Transmembrane Domain of Cowpea Mild Mottle Virus TGBp2 Is Critical for Plasmodesmata Localization and for Its Interaction With TGBp1 and TGBp3.

Jiang C, et al.  Front Microbiol. 2022 Apr 15;13:860695. doi: 10.3389/fmicb.2022.860695. eCollection 2022.

PMID: 35495691
9

Analysis of soybean cultivars response to mosaic and mottle disease caused by soybean yellow mottle mosaic virus.

Srikant M, et al.  Virusdisease. 2025 Mar;36(1):41-47. doi: 10.1007/s13337-024-00905-7. Epub 2025 Jan 23.

PMID: 40290768
10

Construction of a full-length infectious cDNA clone of Cowpea mild mottle virus.

Carvalho SL, et al.  Virus Genes. 2017 Feb;53(1):137-140. doi: 10.1007/s11262-016-1395-x. Epub 2016 Oct 11.

PMID: 27730428