Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_002823505.1 |
Isolate | Argentina |
Release date | 2018/8/25 |
Submitter | Rodriguez Pardina,P.E., Hanada,K., Zerbini,F.M., Ducasse,D.A. |
Host | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_009506489.1 |
---|---|
Location | 357-1100 |
Gene Name | CP |
Protein Name | capsid protein |
Coding Region | ATGCCTAAGCGCGATGCCCCATGGCGTTTAATGGCGGGGACCTCAAAGGTTAGTCGTACCACCAATTATTCGCCTCGAGGAGGTATGCCCAAGCGTGATGCTTGGGTTAACAGGCCCATGTACAGGAAGCCCAGGATCTATCGCATCTGGAGAGGTCCAGATGTTCCTAGAGGGTGTGAAGGTCCTTGTAAGGTCCAGTCGTACGAGCAGCGTCATGACATCTCTCACGTTGGCAAAGTCATGTGCGTTTCTGACGTGACACGTGGTAACGGTATTACCCACCGCGTTGGTAAGCGTTTTTGTGTTAAGTCCGTGTACATTTTGGGGAAGATATGGATGGACGAGAATATCAAGTTGAAGAACCACACCAACAGCGTCATGTTCTGGTTGGTGCGAGATCGTAGACCGTATGGGACACCTATGGATTTTGGCCAGGTGTTCAACATGTTTGACAATGAGCCTAGCACTGCTACCGTGAAGAACGATCTTCGGGACCGTTACCAAGTAATGCATAAGTTTTATGCAAAGGTTACGGGTGGACAATACGCTAGCAATGAGCAGGCTCTCGTGAAGCGTTTCTGGAAGGTGAACAATTACGTGGTGTACAACCATCAAGAAGCTGGGAAATATGAGAATCATACTGAGAACGCCCTATTATTGTATATGGCATGTACTCATGCTTCTAATCCCGTGTACGCGACATTGAAAATTCGGATCTATTTTTACGATTCGATCAGTAATTAA |
Protein Sequence | MPKRDAPWRLMAGTSKVSRTTNYSPRGGMPKRDAWVNRPMYRKPRIYRIWRGPDVPRGCEGPCKVQSYEQRHDISHVGKVMCVSDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSISN |
NCBI Accession | YP_009506490.1 |
---|---|
Location | 399-995 |
Gene Name | AC5 |
Protein Name | AC5 |
Coding Region | ATGATTCTCATATTTCCCAGCTTCTTGATGGTTGTACACCACGTAATTGTTCACCTTCCAGAAACGCTTCACGAGAGCCTGCTCATTGCTAGCGTATTGTCCACCCGTAACCTTTGCATAAAACTTATGCATTACTTGGTAACGGTCCCGAAGATCGTTCTTCACGGTAGCAGTGCTAGGCTCATTGTCAAACATGTTGAACACCTGGCCAAAATCCATAGGTGTCCCATACGGTCTACGATCTCGCACCAACCAGAACATGACGCTGTTGGTGTGGTTCTTCAACTTGATATTCTCGTCCATCCATATCTTCCCCAAAATGTACACGGACTTAACACAAAAACGCTTACCAACGCGGTGGGTAATACCGTTACCACGTGTCACGTCAGAAACGCACATGACTTTGCCAACGTGAGAGATGTCATGACGCTGCTCGTACGACTGGACCTTACAAGGACCTTCACACCCTCTAGGAACATCTGGACCTCTCCAGATGCGATAGATCCTGGGCTTCCTGTACATGGGCCTGTTAACCCAAGCATCACGCTTGGGCATACCTCCTCGAGGCGAATAATTGGTGGTACGACTAACCTTTGA |
Protein Sequence | MILIFPSFLMVVHHVIVHLPETLHESLLIASVLSTRNLCIKLMHYLVTVPKIVLHGSSARLIVKHVEHLAKIHRCPIRSTISHQPEHDAVGVVLQLDILVHPYLPQNVHGLNTKTLTNAVGNTVTTCHVRNAHDFANVRDVMTLLVRLDLTRTFTPSRNIWTSPDAIDPGLPVHGPVNPSITLGHTSSRRIIGGTTNL |
NCBI Accession | YP_009506491.1 |
---|---|
Location | 1097-1495 |
Gene Name | REn |
Protein Name | replication enhancer |
Coding Region | ATGGATTCACGCACCGGGGAACTCATCACTGCGCCTCAAGCAGAGAATGGCGTCTTTATCTGGGAGATATCAAATCCCCTTTATTTCAAGATAACCAACGTGGAGGATCCACTATACACCAACACCAGGATATACCACCTCCAGATACGGTTCAACCACAACGCGAGGAAAGCGTTGGATCTCCACAAGGCATTTCTGAATTTCCAAGTCTGGACGACATCACTAACAGCTTCTGGGACGACATATTTAAATAGATTTAGACATTTAGTTTTATTATATCTAGATCAATTAGGTGTTATTTCCATTAACAATGTAATTAGAGCTGTTCGCTCCGCGACAGACAGATCGTATGTAAATCATGTACTTGAGAATCATTCAATAAAATTCAAACTTTATTAA |
Protein Sequence | MDSRTGELITAPQAENGVFIWEISNPLYFKITNVEDPLYTNTRIYHLQIRFNHNARKALDLHKAFLNFQVWTTSLTASGTTYLNRFRHLVLLYLDQLGVISINNVIRAVRSATDRSYVNHVLENHSIKFKLY |
NCBI Accession | YP_009506492.1 |
---|---|
Location | 1242-1631 |
Gene Name | TrAP |
Protein Name | tanscriptional activator protein |
Coding Region | ATGCTAAATTCATCTTCCTCAACTCCCCCCTCTATCAAGACACGGCACAGAGCAGCCAAACGCAGAGCAGTTAGACGCAGACGCATAGACCTAAATTGCGGCTGCTCCATCTACATTCACATCGACTGCAGAAACAATGGATTCACGCACCGGGGAACTCATCACTGCGCCTCAAGCAGAGAATGGCGTCTTTATCTGGGAGATATCAAATCCCCTTTATTTCAAGATAACCAACGTGGAGGATCCACTATACACCAACACCAGGATATACCACCTCCAGATACGGTTCAACCACAACGCGAGGAAAGCGTTGGATCTCCACAAGGCATTTCTGAATTTCCAAGTCTGGACGACATCACTAACAGCTTCTGGGACGACATATTTAAATAG |
Protein Sequence | MLNSSSSTPPSIKTRHRAAKRRAVRRRRIDLNCGCSIYIHIDCRNNGFTHRGTHHCASSREWRLYLGDIKSPLFQDNQRGGSTIHQHQDIPPPDTVQPQREESVGSPQGISEFPSLDDITNSFWDDIFK |
NCBI Accession | YP_009506493.1 |
---|---|
Location | 1558-2604 |
Gene Name | Rep |
Protein Name | replication asociated protein |
Coding Region | ATGCTTCCAAAAACTATTTTATCACATATCCTAGATGTTCTCTCTCCAAAGAAGACGCACTTTCCCAATTACAAACCCTACAGGACACCAACCAACAAGAAATTCATCAAGATCTGTAGAGAACTTCACGAGGATGGGGAGCCTCATCTCCATGTGCTTATACAATTCGAAGGCAAATACCAATGCACGAATAACAGATTCTTCGACTTGGTATCCCCAACAAGATCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCATCGTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACTCTCGAATGGGGAGAATTCCAGATCGACGGTAGAAGTGCTAGAGGAGGTCAGCAGACGGCTAACGACGCCGCCGCAGAGGCATTAAACGCCCATTCTAAAGAAGCCGCTATCCAAATAATCAGGGAAAAGCTCCCTGAAAAATATTTATTTCAATATCATAATTTAAATTCCAATTTAGATAGGATTTTTAGTAAGCCTCCAGAACCGTGGGTTCCTCCGTTTCGACTCTCATCTTTCACTAACGTGCCTGACGAGATGCAAAATTGGGCTGATGATTATTTTGGAAAGGATTCCGCTGCGCGGCCAGAGAGACCTATAAGTATTATCATCGAAGGCGATAGTCGAACGGGGAAGACGATGTGGGCTCGTGCATTGGGCCCACATAATTATTTAAGTGGACATCTCGACTTTAATTCAAAGGTTTATTCAAATAATGTTGAGTATAACGTCATTGATGATGTCACTCCGCATTACCTAAAGTTAAAGCACTGGAAAGAGTTAATTGGGGCCCAAAGAGATTGGCAGTCCAACTGCAAATATGGAAAGCCAGTTCAAATTAAAGGAGGGATCCCATCAATCGTGCTGTGCAATCCAGGAGAGGGGGCTAGCTATAAAGACTTCCTAGACAAAGAGGAAAATGCATCTCTAAGAGCTTGGACACTTCATAATGCTAAATTCATCTTCCTCAACTCCCCCCTCTATCAAGACACGGCACAGAGCAGCCAAACGCAGAGCAGTTAG |
Protein Sequence | MLPKTILSHILDVLSPKKTHFPNYKPYRTPTNKKFIKICRELHEDGEPHLHVLIQFEGKYQCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDGDTLEWGEFQIDGRSARGGQQTANDAAAEALNAHSKEAAIQIIREKLPEKYLFQYHNLNSNLDRIFSKPPEPWVPPFRLSSFTNVPDEMQNWADDYFGKDSAARPERPISIIIEGDSRTGKTMWARALGPHNYLSGHLDFNSKVYSNNVEYNVIDDVTPHYLKLKHWKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENASLRAWTLHNAKFIFLNSPLYQDTAQSSQTQSS |
NCBI Accession | YP_009506494.1 |
---|---|
Location | 2214-2570 |
Gene Name | AC4 |
Protein Name | AC4 |
Coding Region | ATGTTCTCTCTCCAAAGAAGACGCACTTTCCCAATTACAAACCCTACAGGACACCAACCAACAAGAAATTCATCAAGATCTGTAGAGAACTTCACGAGGATGGGGAGCCTCATCTCCATGTGCTTATACAATTCGAAGGCAAATACCAATGCACGAATAACAGATTCTTCGACTTGGTATCCCCAACAAGATCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCATCGTCCGACGTCAAGTCCTACATCGACAAGGACGGAGATACTCTCGAATGGGGAGAATTCCAGATCGACGGTAGAAGTGCTAGAGGAGGTCAGCAGACGGCTAACGACGCCGCCGCAGAGGCATTAA |
Protein Sequence | MFSLQRRRTFPITNPTGHQPTRNSSRSVENFTRMGSLISMCLYNSKANTNARITDSSTWYPQQDQHISIRTFRELNHRPTSSPTSTRTEILSNGENSRSTVEVLEEVSRRLTTPPQRH |
1 |
Soybean chlorotic spot virus, a novel begomovirus infecting soybean in Brazil. Coco D, et al. Arch Virol. 2013 Feb;158(2):457-62. doi: 10.1007/s00705-012-1499-0. Epub 2012 Oct 10. PMID: 23053525 |
---|---|
2 |
Molecular variability of cowpea mild mottle virus infecting soybean in Brazil. Zanardo LG, et al. Arch Virol. 2014 Apr;159(4):727-37. doi: 10.1007/s00705-013-1879-0. Epub 2013 Oct 19. PMID: 24142270 |
3 |
Bornancini VA, et al. Viruses. 2020 Feb 11;12(2):202. doi: 10.3390/v12020202. PMID: 32054104 |
4 |
Tomato mottle wrinkle virus, a recombinant begomovirus infecting tomato in Argentina. Vaghi Medina CG, et al. Arch Virol. 2015 Feb;160(2):581-5. doi: 10.1007/s00705-014-2216-y. Epub 2014 Sep 25. PMID: 25252814 |
5 |
Reyna P, et al. Viruses. 2023 Feb 7;15(2):462. doi: 10.3390/v15020462. PMID: 36851675 |
6 |
Characterization of tomato yellow vein streak virus, a begomovirus from Brazil. Albuquerque LC, et al. Virus Genes. 2010 Feb;40(1):140-7. doi: 10.1007/s11262-009-0426-2. Epub 2009 Nov 24. PMID: 19937269 |
7 |
Gu H, et al. Virology. 2005 Mar 15;333(2):271-83. doi: 10.1016/j.virol.2005.01.020. PMID: 15721361 |