Siegesbeckia yellow vein virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_000867465.1
Isolate China:Guangdong province
Release date 2015/2/13
Submitter Wu,J.B., Zhou,X.P., Cai,J.H., Wu,J.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_008236
ACCGGATGGCCGCCGATTTTTTTAAAGTGGGCCCCCAAAAAAATGATCTAGACCGTTGCTCAAAGCTAACTAAAAAATATCCACGTATGCTTTTGTATATTTAAATGTATTTCCTTTTGATTTATATATGAAAATGTGGGATCCTTTAATTAACGAATTCCCTGAGACCGTTCACGGTTTTAGATGTATGCTTGCAATAAAATATCTGCAAGCCGTTCAATTGACGTACTCCCCTGATACGGTAGGATACGATTTAATTCGTGAACTTATACGTATTTTACGTACTAAGGATTATGGCCAAGCGACCTGCAGATATAGTCATTTCCACTCCCGCCTCCAAGGTACGTCGGAGGTTGAACTTCGACAGCCCCTATCGCAGCAGTGCTGCTGCCCCAACTGTCCTTGTCACCAACAAAAGGAGGACATGGGTCAATCGGCCCATGTACAGAAAGCCCAGAATGTACAGGATGTACAAAAGCCCTGATGTTCCTCGTGGTTGTGAAGGTCCATGTAAGGTTCAGTCGTTTGAACAGCGTCACGATGTAGTCCATGTAGGTAAAGTAATATGCGTGTCTGATGTTACCCGTGGTAATGGGTTGACTCACCGTGTGGGTAAGAGGTTCTGTATTAAATCTGTATACGTTTTGGGTAAAATCTGGATGGATGAAAATATTAAGACCAAGAATCACACTAATACGGTCATGTTCTACCTAGTCCGTGATAGAAGACCCTTTGGTACTCCTCAGGATTTTGGACAAGTTTTTAACATGTATGATAATGAACCTAGTACTGCAACTGTGAAGAATGACAACAGAGATCGATTTCAAGTACTTAGAAGATTTCAGTCTACCGTTACTGGTGGCCAGTATGCATCTAAGGAGCAAGCCATAGTTAGGAAATTTATGAAGATTAACAACCACGTTACTTACAACCATCAGGAAGCTGCGAAGTACGATAACCATACAGAGAACGCCTTGTTATTGTATATGGCATGTACTCATGCCAGTAACCCTGTGTATGCTACTTTGAAAATCAGGATCTATTTTTACGATTCTGTTCAGAATTAATAAATATTGAATTTTATATCATGAAATTCCTGTACATACATTGTGTGTTGTAGTTTATTATATAATACATGATCTACTGCTCTAATTACATTATTAATAGATATTACACCTAAATTATCTAAATACTGCATGACTTGCTTCTTAAATACTCTCAAGAAACGCCATGTCTGAGGCTGTAAGCGAGTCCAGACTTCGAAAATCAGAAAGCATTTGTGAATTCCCAGTTGAGTTCTCAGGTTGTAGTTGAATTGAATCTGGACGGTAATCTTGTCTTGTTCTTTGTTGAATGGCCTGCTGAGGTGATCTGTTATCTTGAAATATAGGGGATTTGGCACCGTCCAGATATACACGCCATTCTTTGCCTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATCGTTGGCACAGTGTATTCCTATGTATATTGTGCAACCACAGTCTAGGTCAACCCTACGTCTCCTGGTCACTTTCTTCCTCTTGGCTAGCTTGTGCTGGACTTTGATTGGTATTGGAGTAGAGTGGCTCGTTGAGGGTGATGAAGGTTGCATTTTTTATTGCCCAGGCTTTTAATGCACTATTCTTTTCTTCATCAAGATATTCTATATAGGAGGCAGTTGGTCCTGGATTGCAAAGGAAGATTGTTGGGATTCCACCTTTAATTTGAATTGGCTTCCCATACTTTGTGTTGCTTTGCCAGTCTCGTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGATAGTGCGGGTCTACGTCATCAATGACGTTGTACCATGCATCATTGCTGTAGACTTTTGGGCTCAAGTCAAGATGACCACACAAATAGTTGTGTGGTCCCAGTGATCTTGCCCACATTGTCTTCCCTGTCCTGCTATCACCCTGTATGACTATACTTACAGGTCTCCATGGCCGCGCAGCGGCATTGGCTATGTTTTCAGAGACCCATTCTTCAAGTTCTTCTGGAACTTGATTAAAAGAAGATGAAATAAAAGGAGAAACATAAATATCTATAGGAGGTGTAAAGATCCTATCTAAATTACTATTTAAATTATGAAACTGTAAAACATAATCTTTGGGAGCTTTCTCCCTTAATATATTGAGGGCCGAAACTTTGGACCCTGAGTTGATTGCCTCGGCATACGCGTCGTTTGCAGATTGGCAACCTCCTCTAGCTGATCGTCCATCGATCTGGAAAACTCCAGAATCAAGGATGTCTCCGTCTTTCTCCATGTAGGTTTTGACATCAGACGAGCTTTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTACTTGGGGATGTGAGATCGAAGAATCTATTATTTTTGCATTGGAATTTTCCTTCGAACTGGATGAGAACATGCAGGTGAGGATTCCCATCGTTGTGTAGTTCTCTGCAGATTCTGATGAATAATATATTAGTTGGGGTTTCTAGGGTTTGTAATTGTGAAAGTGCTTCTTCTTTTGTAAGTGAGCACTGTGGGTATGTTAGAAAATAATTTTTTGCATTTATTCTGAATTTAGTAGGTGGAGGCATGTTGACTTGGTCAATCGGTGTCTCTCAATCTTTGCTATGCAATCGGTGTCTGGGGTCTTATTTATATGAGACACCAAATGGCAATATTGTAATTTGGTAAAGTGGAGCGTATAACTTTAATTCAAACTCCAGAATGGTAAAGCGGCCATCCGTCTAATATT

Gene Information

NCBI Accession YP_665621.1
Location 128-484
Gene Name AV2
Protein Name precoat protein
Coding Region ATGAAAATGTGGGATCCTTTAATTAACGAATTCCCTGAGACCGTTCACGGTTTTAGATGTATGCTTGCAATAAAATATCTGCAAGCCGTTCAATTGACGTACTCCCCTGATACGGTAGGATACGATTTAATTCGTGAACTTATACGTATTTTACGTACTAAGGATTATGGCCAAGCGACCTGCAGATATAGTCATTTCCACTCCCGCCTCCAAGGTACGTCGGAGGTTGAACTTCGACAGCCCCTATCGCAGCAGTGCTGCTGCCCCAACTGTCCTTGTCACCAACAAAAGGAGGACATGGGTCAATCGGCCCATGTACAGAAAGCCCAGAATGTACAGGATGTACAAAAGCCCTGA
Protein Sequence MKMWDPLINEFPETVHGFRCMLAIKYLQAVQLTYSPDTVGYDLIRELIRILRTKDYGQATCRYSHFHSRLQGTSEVELRQPLSQQCCCPNCPCHQQKEDMGQSAHVQKAQNVQDVQKP

NCBI Accession YP_665622.1
Location 294-1067
Gene Name AV1
Protein Name coat protein
Coding Region ATGGCCAAGCGACCTGCAGATATAGTCATTTCCACTCCCGCCTCCAAGGTACGTCGGAGGTTGAACTTCGACAGCCCCTATCGCAGCAGTGCTGCTGCCCCAACTGTCCTTGTCACCAACAAAAGGAGGACATGGGTCAATCGGCCCATGTACAGAAAGCCCAGAATGTACAGGATGTACAAAAGCCCTGATGTTCCTCGTGGTTGTGAAGGTCCATGTAAGGTTCAGTCGTTTGAACAGCGTCACGATGTAGTCCATGTAGGTAAAGTAATATGCGTGTCTGATGTTACCCGTGGTAATGGGTTGACTCACCGTGTGGGTAAGAGGTTCTGTATTAAATCTGTATACGTTTTGGGTAAAATCTGGATGGATGAAAATATTAAGACCAAGAATCACACTAATACGGTCATGTTCTACCTAGTCCGTGATAGAAGACCCTTTGGTACTCCTCAGGATTTTGGACAAGTTTTTAACATGTATGATAATGAACCTAGTACTGCAACTGTGAAGAATGACAACAGAGATCGATTTCAAGTACTTAGAAGATTTCAGTCTACCGTTACTGGTGGCCAGTATGCATCTAAGGAGCAAGCCATAGTTAGGAAATTTATGAAGATTAACAACCACGTTACTTACAACCATCAGGAAGCTGCGAAGTACGATAACCATACAGAGAACGCCTTGTTATTGTATATGGCATGTACTCATGCCAGTAACCCTGTGTATGCTACTTTGAAAATCAGGATCTATTTTTACGATTCTGTTCAGAATTAA
Protein Sequence MAKRPADIVISTPASKVRRRLNFDSPYRSSAAAPTVLVTNKRRTWVNRPMYRKPRMYRMYKSPDVPRGCEGPCKVQSFEQRHDVVHVGKVICVSDVTRGNGLTHRVGKRFCIKSVYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPFGTPQDFGQVFNMYDNEPSTATVKNDNRDRFQVLRRFQSTVTGGQYASKEQAIVRKFMKINNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN

NCBI Accession YP_665623.1
Location 1064-1468
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGCAAAGAATGGCGTGTATATCTGGACGGTGCCAAATCCCCTATATTTCAAGATAACAGATCACCTCAGCAGGCCATTCAACAAAGAACAAGACAAGATTACCGTCCAGATTCAATTCAACTACAACCTGAGAACTCAACTGGGAATTCACAAATGCTTTCTGATTTTCGAAGTCTGGACTCGCTTACAGCCTCAGACATGGCGTTTCTTGAGAGTATTTAAGAAGCAAGTCATGCAGTATTTAGATAATTTAGGTGTAATATCTATTAATAATGTAATTAGAGCAGTAGATCATGTATTATATAATAAACTACAACACACAATGTATGTACAGGAATTTCATGATATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGELITAAQAKNGVYIWTVPNPLYFKITDHLSRPFNKEQDKITVQIQFNYNLRTQLGIHKCFLIFEVWTRLQPQTWRFLRVFKKQVMQYLDNLGVISINNVIRAVDHVLYNKLQHTMYVQEFHDIKFNIY

NCBI Accession YP_665624.1
Location 1209-1619
Gene Name AC2
Protein Name transcription activator protein
Coding Region ATGCAACCTTCATCACCCTCAACGAGCCACTCTACTCCAATACCAATCAAAGTCCAGCACAAGCTAGCCAAGAGGAAGAAAGTGACCAGGAGACGTAGGGTTGACCTAGACTGTGGTTGCACAATATACATAGGAATACACTGTGCCAACGATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAGGCAAAGAATGGCGTGTATATCTGGACGGTGCCAAATCCCCTATATTTCAAGATAACAGATCACCTCAGCAGGCCATTCAACAAAGAACAAGACAAGATTACCGTCCAGATTCAATTCAACTACAACCTGAGAACTCAACTGGGAATTCACAAATGCTTTCTGATTTTCGAAGTCTGGACTCGCTTACAGCCTCAGACATGGCGTTTCTTGAGAGTATTTAA
Protein Sequence MQPSSPSTSHSTPIPIKVQHKLAKRKKVTRRRRVDLDCGCTIYIGIHCANDGFTHRGTHHCSSGKEWRVYLDGAKSPIFQDNRSPQQAIQQRTRQDYRPDSIQLQPENSTGNSQMLSDFRSLDSLTASDMAFLESI

NCBI Accession YP_665625.1
Location 1522-2607
Gene Name AC1
Protein Name replication-associated protein
Coding Region ATGCCTCCACCTACTAAATTCAGAATAAATGCAAAAAATTATTTTCTAACATACCCACAGTGCTCACTTACAAAAGAAGAAGCACTTTCACAATTACAAACCCTAGAAACCCCAACTAATATATTATTCATCAGAATCTGCAGAGAACTACACAACGATGGGAATCCTCACCTGCATGTTCTCATCCAGTTCGAAGGAAAATTCCAATGCAAAAATAATAGATTCTTCGATCTCACATCCCCAAGTAGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAAAGCTCGTCTGATGTCAAAACCTACATGGAGAAAGACGGAGACATCCTTGATTCTGGAGTTTTCCAGATCGATGGACGATCAGCTAGAGGAGGTTGCCAATCTGCAAACGACGCGTATGCCGAGGCAATCAACTCAGGGTCCAAAGTTTCGGCCCTCAATATATTAAGGGAGAAAGCTCCCAAAGATTATGTTTTACAGTTTCATAATTTAAATAGTAATTTAGATAGGATCTTTACACCTCCTATAGATATTTATGTTTCTCCTTTTATTTCATCTTCTTTTAATCAAGTTCCAGAAGAACTTGAAGAATGGGTCTCTGAAAACATAGCCAATGCCGCTGCGCGGCCATGGAGACCTGTAAGTATAGTCATACAGGGTGATAGCAGGACAGGGAAGACAATGTGGGCAAGATCACTGGGACCACACAACTATTTGTGTGGTCATCTTGACTTGAGCCCAAAAGTCTACAGCAATGATGCATGGTACAACGTCATTGATGACGTAGACCCGCACTATCTAAAGCACTTTAAGGAATTCATGGGGGCCCAACGAGACTGGCAAAGCAACACAAAGTATGGGAAGCCAATTCAAATTAAAGGTGGAATCCCAACAATCTTCCTTTGCAATCCAGGACCAACTGCCTCCTATATAGAATATCTTGATGAAGAAAAGAATAGTGCATTAAAAGCCTGGGCAATAAAAAATGCAACCTTCATCACCCTCAACGAGCCACTCTACTCCAATACCAATCAAAGTCCAGCACAAGCTAGCCAAGAGGAAGAAAGTGACCAGGAGACGTAG
Protein Sequence MPPPTKFRINAKNYFLTYPQCSLTKEEALSQLQTLETPTNILFIRICRELHNDGNPHLHVLIQFEGKFQCKNNRFFDLTSPSRSAHFHPNIQGAKSSSDVKTYMEKDGDILDSGVFQIDGRSARGGCQSANDAYAEAINSGSKVSALNILREKAPKDYVLQFHNLNSNLDRIFTPPIDIYVSPFISSSFNQVPEELEEWVSENIANAAARPWRPVSIVIQGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTASYIEYLDEEKNSALKAWAIKNATFITLNEPLYSNTNQSPAQASQEEESDQET

NCBI Accession YP_665626.1
Location 2157-2450
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGAATCCTCACCTGCATGTTCTCATCCAGTTCGAAGGAAAATTCCAATGCAAAAATAATAGATTCTTCGATCTCACATCCCCAAGTAGGTCAGCACATTTCCATCCAAACATTCAGGGAGCTAAAAGCTCGTCTGATGTCAAAACCTACATGGAGAAAGACGGAGACATCCTTGATTCTGGAGTTTTCCAGATCGATGGACGATCAGCTAGAGGAGGTTGCCAATCTGCAAACGACGCGTATGCCGAGGCAATCAACTCAGGGTCCAAAGTTTCGGCCCTCAATATATTAA
Protein Sequence MGILTCMFSSSSKENSNAKIIDSSISHPQVGQHISIQTFRELKARLMSKPTWRKTETSLILEFSRSMDDQLEEVANLQTTRMPRQSTQGPKFRPSIY

References More References in PubMed

1

Siegesbeckia yellow vein virus is a distinct begomovirus associated with a satellite DNA molecule.

Wu JB, et al.  Arch Virol. 2007;152(4):791-6. doi: 10.1007/s00705-006-0896-7. Epub 2006 Dec 28.

PMID: 17187292
2

Diverse Begomoviruses Evolutionarily Hijack Plant Terpenoid-Based Defense to Promote Whitefly Performance.

Wang N, et al.  Cells. 2022 Dec 30;12(1):149. doi: 10.3390/cells12010149.

PMID: 36611943
3

Molecular characterization of a distinct begomovirus species from Vernonia cinerea and its associated DNA-beta using the bacteriophage Phi 29 DNA polymerase.

Packialakshmi RM, et al.  Virus Genes. 2010 Aug;41(1):135-43. doi: 10.1007/s11262-010-0484-5. Epub 2010 Apr 17.

PMID: 20401528