Bean latent virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_018587735.1
Isolate Mexico: Ruiz, Nayarit
Release date 2021/6/1
Submitter Martinez-Marrero,N., Avalos-Calleros,J.A., Chiquito-Almanza,E., Acosta-Gallegos,J.A., Ambriz-Granados,S., Arguello-Astorga,G.R., Anaya-Lopez,J.L.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_055589
ACCGGATGGCCGCGCGATTTTTTTTATCCCTTGATCCTACGGTCGCCCGCAATTCGCGCTTGGTCCATGTGAATGTGATAAAAAGTGACCAATCATGTTTCGTTTGACGAGTCTAATTATTGTTTCTTCGTCCCCACGTGATGGACCAAGTGCTTTATATATTTGAATTAAATGCTTATCCTCTTTAATTCAAAATGCCTAAGCGCGATGCCCCGTGGCGCACAATGGCGGGGACCTCCAAGGTCAGCCGCTCCGCGAATTATTCGCCTCGTGGAGGTATGGGTCCAAAGATGGACAAGGCCTCTGCTTGGGTTAACAGGCCCATGTATAGGAAGCCCAGGATATATCGGGTCCAAAGAGGACCTGACGTCCCTAGAGGCTGTGAAGGGCCTTGTAAGGTCCAGTCATTTGAACAGCGTCATGATATTTCTCATGTTGGTAAGGTCATTTGTATATCTGATGTCACACGTGGTAACGGTATTACTCATCGTGTGGGAAAACGTTTTTGTGTTAAGTCTGTGTATATTTTAGGTAAGATATGGATGGACGAGAATATTAAATTGAAGAACCACACGAACAGCGTCATGTTCTGGTTGGTCAGAGACAGAAGACCATATGGCACGCCTATGGATTTTGGTCAAGTCTTTAACATGTATGACAATGAGCCCAGTACTGCCACTGTCAAGAACGATCTTCGTGATCGTTTTCAAGTTTTACACAGGTTCTATGCGAAGGTGACTGGTGGTCAGTATGCTAGCAACGAGCAGGCTATTGTTAGGCGATTTTGGAAGGTGAATAATCATGTCGTGTACAATCATCAAGAAGCAGCCAAGTACGAGAATCACACGGAGAATGCGTTACTATTGTATATGGCATGTACGCATGCCTCCAATCCTGTATATGCTACGTTGAAAATACGTAGTTATTTCTATGACTCGATTTCCAATTAATAAATGTTAAATTTTATTGAATGATCTTCTATTACATGAGTTACATATGGTCTGTCTGTTGCGAAAGCAACAGCTCGAATTACATTATTAATTGAAATAACGCCCAAATTGTCTAAGTACAACATGACTAAATGCCTAAATCTATTTAAGTAAGTCGTTCCAGAAACTCGAATCAATGTCGTCCAGACTTGGAAATTTAGATACGCTTTGTGTAGATCCAGAGCCCTCCTCAGGTTGTGGTTGAACCTTATCTGGATGTGGAATATCCTCGTCAAGGAGAACGGTGGATCCTCTACTCTTGTTATCTTGAAATAAAGGGGATTTGGCACCTCCCAGATAAAAACGCCACTCTCTGCTTGATGCGCAGTGATGGGTTCCCCTGTGAGTGAATCCATGATTGAAGCAGTTGATGTGTAGGAAGATCGAACAGCCGCACTCCAAGTCGATTCTTCTACGTCGGACTGCCCTGCGTTTTGCAAACCGGTGCTGAGGTTTGATAGAGGGGGGAGTTGAGGAAGATGAATTTCGCATTATGAAGCGTCCACGCTTTTAGATGTGCATTCTCTTGTCTATCCAAGTAGTCTTTATAACTCGCCCCCTCTCCTGGATTGCAAAGCACAATTGATGGGATACCACCTTTAATTTGAACTGGCTTTCCGTACTTGCAATTTGTTTGCCAATTCTTTTGGGCCCCGATAAGCTCTTTCCAGTGCTTCATCTTTAAGTATTGTGGAGCGACGTCATCAATGACGTTGTAATCTACATTATTTGAATAGACAAAAGAATTGAAATCCAGGTGTCCACTCAAGTAATTATGAGAACCTAATGAACGTGCCCACATTGTTTTTCCAGTTCTTGAATCACCTTCAATGATGATACTAATAGGTCTCTCTGTCCGCGCAGCGGCACCCCTTCCGAAATAATCGTCAGCCCATTGTTGCATATCCAGTGGAACGTTGTTGAACGACGATTGTGGAAATGGAGGAACCCATGGTTCCGGGGGTTTTTGGAATATCCTTGTTGCGTTTGAGACCAGATTATGATATTGAAGGAAGAAATGTTGAGGTTGTTCTTCCTTGATTATCTGCAGAGCCGCTTCTGCAGAACCTGCATTTAATGCCTTCGCGTATGTGTCGTTAGCAGATTGCTGACCTCCTCTAGCAGATCTGCCGTCGATTTGGAACTCTCCCCATTCAATTGTATCTCCATCCTTGTCGATGTAGGACTTGACATCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGGTTGTGGAGACCAGGTCGAAGAATCTGTTATTTGAACATTGGTATTTCCCTTCGAACTGGATAAGCACGTGTAGATGAGGTTGCCCATCTTCATGTGTTTCTCTGCATATCTTGATAAACTTCTTGTTAACTGGAGTTGTTAGACGTTGTAATTGTGATAATGCCTCTTCTTTGGATATGGAACACTGAGGATATGTGAGGAAGTAGTTCTTGGCATTTAAGCGAAAGCGTTTCGGGAGTGGCATATTTGTAATAAGAGGGGTGTACACCGATTGAGGCTCTCTCAAAACTGTCATAATGAATCGGTGTATGGTGTACAATTTATACTAGAACCCTCAATCTCAATTTCTGCACACGTGGCGGCCATCCGATATAATATT

Gene Information

NCBI Accession YP_010087810.1
Location 172-531
Protein Name hypothetical protein
Coding Region ATGCTTATCCTCTTTAATTCAAAATGCCTAAGCGCGATGCCCCGTGGCGCACAATGGCGGGGACCTCCAAGGTCAGCCGCTCCGCGAATTATTCGCCTCGTGGAGGTATGGGTCCAAAGATGGACAAGGCCTCTGCTTGGGTTAACAGGCCCATGTATAGGAAGCCCAGGATATATCGGGTCCAAAGAGGACCTGACGTCCCTAGAGGCTGTGAAGGGCCTTGTAAGGTCCAGTCATTTGAACAGCGTCATGATATTTCTCATGTTGGTAAGGTCATTTGTATATCTGATGTCACACGTGGTAACGGTATTACTCATCGTGTGGGAAAACGTTTTTGTGTTAAGTCTGTGTATATTTTAG
Protein Sequence MLILFNSKCLSAMPRGAQWRGPPRSAAPRIIRLVEVWVQRWTRPLLGLTGPCIGSPGYIGSKEDLTSLEAVKGLVRSSHLNSVMIFLMLVRSFVYLMSHVVTVLLIVWENVFVLSLCIF

NCBI Accession YP_010087811.1
Location 195-950
Gene Name AV1
Protein Name coat protein
Coding Region ATGCCTAAGCGCGATGCCCCGTGGCGCACAATGGCGGGGACCTCCAAGGTCAGCCGCTCCGCGAATTATTCGCCTCGTGGAGGTATGGGTCCAAAGATGGACAAGGCCTCTGCTTGGGTTAACAGGCCCATGTATAGGAAGCCCAGGATATATCGGGTCCAAAGAGGACCTGACGTCCCTAGAGGCTGTGAAGGGCCTTGTAAGGTCCAGTCATTTGAACAGCGTCATGATATTTCTCATGTTGGTAAGGTCATTTGTATATCTGATGTCACACGTGGTAACGGTATTACTCATCGTGTGGGAAAACGTTTTTGTGTTAAGTCTGTGTATATTTTAGGTAAGATATGGATGGACGAGAATATTAAATTGAAGAACCACACGAACAGCGTCATGTTCTGGTTGGTCAGAGACAGAAGACCATATGGCACGCCTATGGATTTTGGTCAAGTCTTTAACATGTATGACAATGAGCCCAGTACTGCCACTGTCAAGAACGATCTTCGTGATCGTTTTCAAGTTTTACACAGGTTCTATGCGAAGGTGACTGGTGGTCAGTATGCTAGCAACGAGCAGGCTATTGTTAGGCGATTTTGGAAGGTGAATAATCATGTCGTGTACAATCATCAAGAAGCAGCCAAGTACGAGAATCACACGGAGAATGCGTTACTATTGTATATGGCATGTACGCATGCCTCCAATCCTGTATATGCTACGTTGAAAATACGTAGTTATTTCTATGACTCGATTTCCAATTAA
Protein Sequence MPKRDAPWRTMAGTSKVSRSANYSPRGGMGPKMDKASAWVNRPMYRKPRIYRVQRGPDVPRGCEGPCKVQSFEQRHDISHVGKVICISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATVKNDLRDRFQVLHRFYAKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRSYFYDSISN

NCBI Accession YP_010087812.1
Location 947-1345
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCACTCACAGGGGAACCCATCACTGCGCATCAAGCAGAGAGTGGCGTTTTTATCTGGGAGGTGCCAAATCCCCTTTATTTCAAGATAACAAGAGTAGAGGATCCACCGTTCTCCTTGACGAGGATATTCCACATCCAGATAAGGTTCAACCACAACCTGAGGAGGGCTCTGGATCTACACAAAGCGTATCTAAATTTCCAAGTCTGGACGACATTGATTCGAGTTTCTGGAACGACTTACTTAAATAGATTTAGGCATTTAGTCATGTTGTACTTAGACAATTTGGGCGTTATTTCAATTAATAATGTAATTCGAGCTGTTGCTTTCGCAACAGACAGACCATATGTAACTCATGTAATAGAAGATCATTCAATAAAATTTAACATTTATTAA
Protein Sequence MDSLTGEPITAHQAESGVFIWEVPNPLYFKITRVEDPPFSLTRIFHIQIRFNHNLRRALDLHKAYLNFQVWTTLIRVSGTTYLNRFRHLVMLYLDNLGVISINNVIRAVAFATDRPYVTHVIEDHSIKFNIY

NCBI Accession YP_010087813.1
Location 1092-1481
Gene Name AC2
Protein Name transcriptional activator protein
Coding Region ATGCGAAATTCATCTTCCTCAACTCCCCCCTCTATCAAACCTCAGCACCGGTTTGCAAAACGCAGGGCAGTCCGACGTAGAAGAATCGACTTGGAGTGCGGCTGTTCGATCTTCCTACACATCAACTGCTTCAATCATGGATTCACTCACAGGGGAACCCATCACTGCGCATCAAGCAGAGAGTGGCGTTTTTATCTGGGAGGTGCCAAATCCCCTTTATTTCAAGATAACAAGAGTAGAGGATCCACCGTTCTCCTTGACGAGGATATTCCACATCCAGATAAGGTTCAACCACAACCTGAGGAGGGCTCTGGATCTACACAAAGCGTATCTAAATTTCCAAGTCTGGACGACATTGATTCGAGTTTCTGGAACGACTTACTTAAATAG
Protein Sequence MRNSSSSTPPSIKPQHRFAKRRAVRRRRIDLECGCSIFLHINCFNHGFTHRGTHHCASSREWRFYLGGAKSPLFQDNKSRGSTVLLDEDIPHPDKVQPQPEEGSGSTQSVSKFPSLDDIDSSFWNDLLK

NCBI Accession YP_010087814.1
Location 1402-2478
Gene Name AC1
Protein Name replication-associated protein
Coding Region ATGCCACTCCCGAAACGCTTTCGCTTAAATGCCAAGAACTACTTCCTCACATATCCTCAGTGTTCCATATCCAAAGAAGAGGCATTATCACAATTACAACGTCTAACAACTCCAGTTAACAAGAAGTTTATCAAGATATGCAGAGAAACACATGAAGATGGGCAACCTCATCTACACGTGCTTATCCAGTTCGAAGGGAAATACCAATGTTCAAATAACAGATTCTTCGACCTGGTCTCCACAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTACATCGACAAGGATGGAGATACAATTGAATGGGGAGAGTTCCAAATCGACGGCAGATCTGCTAGAGGAGGTCAGCAATCTGCTAACGACACATACGCGAAGGCATTAAATGCAGGTTCTGCAGAAGCGGCTCTGCAGATAATCAAGGAAGAACAACCTCAACATTTCTTCCTTCAATATCATAATCTGGTCTCAAACGCAACAAGGATATTCCAAAAACCCCCGGAACCATGGGTTCCTCCATTTCCACAATCGTCGTTCAACAACGTTCCACTGGATATGCAACAATGGGCTGACGATTATTTCGGAAGGGGTGCCGCTGCGCGGACAGAGAGACCTATTAGTATCATCATTGAAGGTGATTCAAGAACTGGAAAAACAATGTGGGCACGTTCATTAGGTTCTCATAATTACTTGAGTGGACACCTGGATTTCAATTCTTTTGTCTATTCAAATAATGTAGATTACAACGTCATTGATGACGTCGCTCCACAATACTTAAAGATGAAGCACTGGAAAGAGCTTATCGGGGCCCAAAAGAATTGGCAAACAAATTGCAAGTACGGAAAGCCAGTTCAAATTAAAGGTGGTATCCCATCAATTGTGCTTTGCAATCCAGGAGAGGGGGCGAGTTATAAAGACTACTTGGATAGACAAGAGAATGCACATCTAAAAGCGTGGACGCTTCATAATGCGAAATTCATCTTCCTCAACTCCCCCCTCTATCAAACCTCAGCACCGGTTTGCAAAACGCAGGGCAGTCCGACGTAG
Protein Sequence MPLPKRFRLNAKNYFLTYPQCSISKEEALSQLQRLTTPVNKKFIKICRETHEDGQPHLHVLIQFEGKYQCSNNRFFDLVSTTRSAHFHPNIQGAKSSSDVKSYIDKDGDTIEWGEFQIDGRSARGGQQSANDTYAKALNAGSAEAALQIIKEEQPQHFFLQYHNLVSNATRIFQKPPEPWVPPFPQSSFNNVPLDMQQWADDYFGRGAAARTERPISIIIEGDSRTGKTMWARSLGSHNYLSGHLDFNSFVYSNNVDYNVIDDVAPQYLKMKHWKELIGAQKNWQTNCKYGKPVQIKGGIPSIVLCNPGEGASYKDYLDRQENAHLKAWTLHNAKFIFLNSPLYQTSAPVCKTQGSPT

NCBI Accession YP_010087815.1
Location 2064-2327
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGAAGATGGGCAACCTCATCTACACGTGCTTATCCAGTTCGAAGGGAAATACCAATGTTCAAATAACAGATTCTTCGACCTGGTCTCCACAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGATGTCAAGTCCTACATCGACAAGGATGGAGATACAATTGAATGGGGAGAGTTCCAAATCGACGGCAGATCTGCTAGAGGAGGTCAGCAATCTGCTAACGACACATACGCGAAGGCATTAA
Protein Sequence MKMGNLIYTCLSSSKGNTNVQITDSSTWSPQPGQHISIRTYRELNPAPMSSPTSTRMEIQLNGESSKSTADLLEEVSNLLTTHTRRH

References More References in PubMed

1

Latent infection of Vigna unguiculata with seed-borne bean common mosaic virus modulates plant growth and may contribute to mutualistic symbiosis between the virus and host plant.

Takahashi H, et al.  Front Microbiol. 2025 Apr 9;16:1524787. doi: 10.3389/fmicb.2025.1524787. eCollection 2025.

PMID: 40270808
2

Apple latent spherical virus vector as vaccine for the prevention and treatment of mosaic diseases in pea, broad bean, and eustoma plants by bean yellow mosaic virus.

Satoh N, et al.  Viruses. 2014 Nov 7;6(11):4242-57. doi: 10.3390/v6114242.

PMID: 25386843
3

Potential gene products of bean golden mosaic virus have higher sequence homologies to those of tomato golden mosaic virus than to those of cassava latent virus.

Ikegami M, et al.  Virus Genes. 1988 Mar;1(2):191-203. doi: 10.1007/BF00555937.

PMID: 3238924
4

Estimation of the functions of viral RNA silencing suppressors by apple latent spherical virus vector.

Li C, et al.  Virus Genes. 2020 Feb;56(1):67-77. doi: 10.1007/s11262-019-01708-5. Epub 2019 Oct 23.

PMID: 31646461
5

Summary of taxonomy changes ratified by the International Committee on Taxonomy of Viruses from the Plant Viruses Subcommittee, 2025.

Rubino L, et al.  J Gen Virol. 2025 Jul;106(7):002114. doi: 10.1099/jgv.0.002114.

PMID: 40711908
6

Virus-vector relationship in the Citrus leprosis pathosystem.

Tassi AD, et al.  Exp Appl Acarol. 2017 Mar;71(3):227-241. doi: 10.1007/s10493-017-0123-0. Epub 2017 Apr 17.

PMID: 28417249
7

Molecular Characterization of a Novel Polerovirus Infecting Soybean in China.

Xu T, et al.  Viruses. 2022 Jun 29;14(7):1428. doi: 10.3390/v14071428.

PMID: 35891408
8

Preventive and curative effects of Apple latent spherical virus vectors harboring part of the target virus genome against potyvirus and cucumovirus infections.

Tamura A, et al.  Virology. 2013 Nov;446(1-2):314-24. doi: 10.1016/j.virol.2013.08.019. Epub 2013 Sep 8.

PMID: 24074595
9

Capulavirus and Grablovirus: two new genera in the family Geminiviridae.

Varsani A, et al.  Arch Virol. 2017 Jun;162(6):1819-1831. doi: 10.1007/s00705-017-3268-6. Epub 2017 Feb 17.

PMID: 28213872
10

The herpes simplex virus latency-associated transcript is spliced during the latent phase of infection.

Wagner EK, et al.  J Virol. 1988 Dec;62(12):4577-85. doi: 10.1128/JVI.62.12.4577-4585.1988.

PMID: 2846871