Genus | Begomovirus |
---|---|
NCBI Assembly | GCF_000867925.1 |
Isolate | Mexico: Yucatan |
Release date | 2015/2/13 |
Submitter | Hernandez-Zepeda,C., Idris,A.M., Carnevali,G., Brown,J.K., Moreno-Valenzuela,O.A. |
Host | |
Vector | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_980243.1 |
---|---|
Location | 197-949 |
Gene Name | AV1 |
Protein Name | coat protein |
Coding Region | ATGCCTAAGCGCGATCTCCCATGGCGCGCGATAGCGGGAACCTCAAAGGTTAGCCGCAATGCTAACTATTCTCCTCGTGCAGGAAGTGGGCCAAGAAACAAGGCCTCTGAATGGGTGAACAGGCCCATGTACAGGAAGCCCAGGATCTACCGGATGATGAGGACCCCCGATGTGCCCAGAGGATGTGAGGGGCCTTGTAAGGTCCAGTCGTATGAACAGCGCCACGACATTTCACATGTCGGCAAGGTCATGTGCATATCTGACGTGACACGTGGTAATGGTATCACCCACCGTGTGGGTAAGCGTTTCTGTGTGAAATCTGTGTATATCCTTGGTAAGATCTGGATGGACGAGAACATCAAGCTCAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTCAGGGATCGTAGACCGTATGGCACGCCTATGGATTTTGGACAAGTGTTCAACATGTTCGACAACGAGCCCAGCACTGCTACGGTGAAGAACGACCTACGCGATCGTTACCAAGTCATGCACAAGTTTTATGGTAAGGTGACAGGTGGACAGTATGCCAGCAACGAGCAGGCTATAGTCAAGAGATTCTGGAAGGTCAACAATCATGTGGTCTACAACCACCAGGAGGCTGGCAAGTATGAGAATCACACGGAGAACGCGCTGTTATTGTATATGGCATGTACTCATGCATCTAACCCTGTGTATGCAACGCTTAAGATTCGAATCTATTTCTACGATTCGATCACGAATTAA |
Protein Sequence | MPKRDLPWRAIAGTSKVSRNANYSPRAGSGPRNKASEWVNRPMYRKPRIYRMMRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYGKVTGGQYASNEQAIVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
NCBI Accession | YP_980244.1 |
---|---|
Location | 946-1344 |
Gene Name | AC3 |
Protein Name | replication enhancer protein |
Coding Region | ATGGATTCACGCACAGGGGAACCCATCACTGCACGTCAGGCAGAGAATGGCGTCTATATCTGGGAGATAGAAAATCCCCTTTATTTCAAGATATTCCGAGTAGAGGACCCGCTGTACACGAGGAGCAGGGTGTACAGCGTACAAATACGGTTCAACCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCTTACCTGAACTTCCAAGTTTGGACGACATCGATGACAGCTTCTGGGTCGACTTATTTAGCTAGGTTTAAACAATTAGTTAACATGTACTTAGATCAGTTAGGCGTTATTTCCATTAACAATGTAATCAGAGCTGTTCGATTCGCAACAGACAGATCGTATGTAAATTATGTACTGGAAAATCATTCAATAAAATTCAAATTTTATTAA |
Protein Sequence | MDSRTGEPITARQAENGVYIWEIENPLYFKIFRVEDPLYTRSRVYSVQIRFNHNLRRALHLHKAYLNFQVWTTSMTASGSTYLARFKQLVNMYLDQLGVISINNVIRAVRFATDRSYVNYVLENHSIKFKFY |
NCBI Accession | YP_980245.1 |
---|---|
Location | 1091-1480 |
Gene Name | AC2 |
Protein Name | transactivator protein |
Coding Region | ATGCGATCTTCATCACCCTCACATCCGCCCTCTATCAAGACAGCACACAGACAGGCCAAGAGGAGGGCCATCAGGAGACGGCGGATTGATCTGGAGTGCGGTTGCTCCATATACTTCCACATAGGCTGTACCGGGCATGGATTCACGCACAGGGGAACCCATCACTGCACGTCAGGCAGAGAATGGCGTCTATATCTGGGAGATAGAAAATCCCCTTTATTTCAAGATATTCCGAGTAGAGGACCCGCTGTACACGAGGAGCAGGGTGTACAGCGTACAAATACGGTTCAACCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCTTACCTGAACTTCCAAGTTTGGACGACATCGATGACAGCTTCTGGGTCGACTTATTTAGCTAG |
Protein Sequence | MRSSSPSHPPSIKTAHRQAKRRAIRRRRIDLECGCSIYFHIGCTGHGFTHRGTHHCTSGREWRLYLGDRKSPLFQDIPSRGPAVHEEQGVQRTNTVQPQPEESVASPQSLPELPSLDDIDDSFWVDLFS |
NCBI Accession | YP_980246.1 |
---|---|
Location | 1392-2477 |
Gene Name | AC1 |
Protein Name | REP protein |
Coding Region | ATGCCACCGGTTAAGCGCTCCAAAGTCTCAGCGAAAAACTATTTCCTCACATATCCTAAGTGCTCTCTTACTAAAGAAGAAGCACTTTCCCAATTACAAAACCTAAACACTCCGGTGAACAAGAAGTTCATCAAGATCTGCAGAGAATTACACGAAAATGGGGAGCCTCACCTCCACATTCTCCTCCAGTTCGAAGGGAAGTACCAGTGCACGAATAACAGATTCTTCGATCTGGTGTCCCCAACCAGGTCAATACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACGTCGAGAAAGACGGAGACACCATCGAATGGGGAGAATTCCAGATCGACGGCAGATCTGCTCGAGGAGGTCAGCAGACAGCTAACGATTCATATGCCAAGGCGTTGAACGCCGGTTCCGCAGAGGCAGCTCTGCAAATCATAAAGGAAGAACAACCGCAACATTTCTTCCTTCAACATCACAACCTGGTTGCTAATGCAACCAAAATATTTCAGAAGAATCCGGAACCGTGGGTCCCGCCGTTTCCCCTCTCCTCATTCACATCCGTTCCAGAAGAGATGCAAGAGTGGGCAGATGATTATTTTGGGAGAGGTGCCGCTGCGCGGCCTGAGAGACCAGTAAGTCTCATAGTTGAAGGTGATTCAAGGACAGGGAAGACGATGTGGGCTCGTGCGTTAGGCCCACATAATTACCTCAGTGGACATCTGGACTTCAATCACCGGGTATACTCAAATGACGTGGAGTATAACGTCATTGATGACGTCGCACCGCACTATCTAAAGCTAAAGCACTGGAAAGAATTGCTGGGGGCCCAGAAAGACTGGCAGTCAAATTGCAAGTACGGCAAGCCAGTTCAAATAAAAGGAGGTATCCCAGCAATCGTGCTTTGCAATCCAGGTGAGGGTGCAAGCTATAAAGATTTCCTCGACAAAGAGGAAAACGCTGCACTCAGAAACTGGACGATCAAGAATGCGATCTTCATCACCCTCACATCCGCCCTCTATCAAGACAGCACACAGACAGGCCAAGAGGAGGGCCATCAGGAGACGGCGGATTGA |
Protein Sequence | MPPVKRSKVSAKNYFLTYPKCSLTKEEALSQLQNLNTPVNKKFIKICRELHENGEPHLHILLQFEGKYQCTNNRFFDLVSPTRSIHFHPNIQGAKSSSDVKSYVEKDGDTIEWGEFQIDGRSARGGQQTANDSYAKALNAGSAEAALQIIKEEQPQHFFLQHHNLVANATKIFQKNPEPWVPPFPLSSFTSVPEEMQEWADDYFGRGAAARPERPVSLIVEGDSRTGKTMWARALGPHNYLSGHLDFNHRVYSNDVEYNVIDDVAPHYLKLKHWKELLGAQKDWQSNCKYGKPVQIKGGIPAIVLCNPGEGASYKDFLDKEENAALRNWTIKNAIFITLTSALYQDSTQTGQEEGHQETAD |
NCBI Accession | YP_980247.1 |
---|---|
Location | 391-1161 |
Gene Name | BV1 |
Protein Name | BV1 |
Coding Region | ATGTATCATGTGAGGGGTAAACGTGTTGGTTACTTCACTAATCGACGTTTTAACTCACGTAATAATGTGTTTAACCGTTCAATCTATGGGAAACGACATGACGGGAAACGTCGAGGAGGTCGATCTGTCAAGCCCACTGCTGAGCCCAATATGTCATCCCAAACCATACATGAGAATCAGTATGGCACTGACTTTGTCATGGCCCATAATTCAGCTATCTCGACGTTCATCAGTTACCCAGACTTGGGCAAGATTGAACCGGGTCGAAGCAGATCCTATATCAAGTTGAAACGACTCCGTTTCAAAGGGACTGTGAAGATTGAACGTGTTCAATCGGATGTGAACATGGACGGTTCTGTCCCGAAAATAGAAGGAGTATTCTCCCTCGTTGTTGTTGTGGATCGGAAACCCCACTTGGGTCCAAGTGGTTTACTGCATACATTCGACGAGCTGTTCGGAGCAATCATTCACAGTCATGGCAATCTCAGCATTGTCCCTTCACTGAAAGACCGTTATTATATTCGCCACGTGTTCAAACGTGTATTGTCATTGGAGAATGACACGCTAATGGTCGATGTGGAAGGATCTACAGCTTTATCTAACAGGCGTTTTAATTGTTGGTCCACTTTCAAGGACGTTGATCGTGATTCATGCAAGGGTGTTTATGATAATATAAGCAAGAACGCCCTGTTAATTTATTATTGCTGGGTGTCGGATACGCCCTCGAAGGCATCCAATTATGTATCTTTTGATCTTGATTATGTTGGTTAA |
Protein Sequence | MYHVRGKRVGYFTNRRFNSRNNVFNRSIYGKRHDGKRRGGRSVKPTAEPNMSSQTIHENQYGTDFVMAHNSAISTFISYPDLGKIEPGRSRSYIKLKRLRFKGTVKIERVQSDVNMDGSVPKIEGVFSLVVVVDRKPHLGPSGLLHTFDELFGAIIHSHGNLSIVPSLKDRYYIRHVFKRVLSLENDTLMVDVEGSTALSNRRFNCWSTFKDVDRDSCKGVYDNISKNALLIYYCWVSDTPSKASNYVSFDLDYVG |
NCBI Accession | YP_980248.1 |
---|---|
Location | 1222-2103 |
Gene Name | BC1 |
Protein Name | movement protein |
Coding Region | ATGGATTCTCAGTTAGTCAATCCTCCTAACGCTTTCAACTACATAGAATCTCACCGAGACGAGTATCAGCTTTCTCATGACTTAACTGAGATAATTCTGCAATTTCCTTCGACGGCGTCGCAGTTTACGGCGAGACTCAGTCGTAGCTGCATGAAAATAGATCACTGCGTCATAGAATACAGACAACAGGTGCCGATCAACGCGACGGGGTCGGTAATAGTGGAGATCCACGACAAAAGGATGACGGACAACGAATCACAACAAGCCACGTGGACTTTTCCGATCAGGTGTAACATAGATCTCCACTACTTCTCGGCTTCGTTCTTCTCCCTGAAGGACCCAATTCCATGGAAGTTGTACTATCGCGTATGCGATACGAATGTTCATCAGAGGACCCACTTCGCCAAGTTCAAAGGGAAACTGAAATTGTCCACCGCAAAACACTCCGTGGATATCCCCTTCCGGGCACCAACAGTGAAGATCCTGTCCAAACAGTTCACAGACAAAGATGTGGACTTTTCCCATGTGGGCTACGGGAAATGGGAGAGGAAGCCCATCAGATGCGCGTCCATGTCCAGAGTTGGGCTTAGAGGCCCAATTGAAATAAGGCCTGGTGAGTCGTGGGCTTCCAGGAGTAACATAGGTACGTGCCAATCAGACGCGGACTCGGAGGTGGAGAACGAGCTCCACCCATACAGACACCTGAACAGGCTCGGGACGAGCGTTCTAGATCCAGGAGAGTCTGCTTCCATCGTGGGAACCCAGAGAGCGGAGTCCAACATCACAATGTCAATGGGCCAGTTGAACGAGCTAGTTCGGACAACGGTCCAAGAATGTATTAATAATAACTGTCAGGCTACTCAGGCCAAATCATTGAAATAA |
Protein Sequence | MDSQLVNPPNAFNYIESHRDEYQLSHDLTEIILQFPSTASQFTARLSRSCMKIDHCVIEYRQQVPINATGSVIVEIHDKRMTDNESQQATWTFPIRCNIDLHYFSASFFSLKDPIPWKLYYRVCDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILSKQFTDKDVDFSHVGYGKWERKPIRCASMSRVGLRGPIEIRPGESWASRSNIGTCQSDADSEVENELHPYRHLNRLGTSVLDPGESASIVGTQRAESNITMSMGQLNELVRTTVQECINNNCQATQAKSLK |
1 |
The molecular characterisation of a Sida-infecting begomovirus from Jamaica. Stewart C, et al. Arch Virol. 2014 Feb;159(2):375-8. doi: 10.1007/s00705-013-1814-4. Epub 2013 Aug 11. PMID: 23933798 |
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2 |
Two new begomoviruses infecting tomato and Hibiscus sp. in the Amazon region of Brazil. Quadros AFF, et al. Arch Virol. 2019 Jul;164(7):1897-1901. doi: 10.1007/s00705-019-04245-6. Epub 2019 Apr 10. PMID: 30972592 |
3 |
Collins AM, et al. Virus Genes. 2009 Dec;39(3):387-95. doi: 10.1007/s11262-009-0401-y. Epub 2009 Sep 20. PMID: 19768650 |
4 |
Hernández-Zepeda C, et al. Virus Genes. 2007 Oct;35(2):369-77. doi: 10.1007/s11262-007-0080-5. Epub 2007 Feb 15. PMID: 17638064 |
5 |
Hernández-Zepeda C, et al. Virus Genes. 2007 Dec;35(3):825-33. doi: 10.1007/s11262-007-0149-1. Epub 2007 Aug 8. PMID: 17682933 |
6 |
Zambrano K, et al. Arch Virol. 2011 Dec;156(12):2263-6. doi: 10.1007/s00705-011-1093-x. Epub 2011 Aug 19. PMID: 21853328 |
7 |
First Report of Tomato Mottle Geminivirus Infecting Tomatoes in Yucatan, Mexico. Garrido-Ramirez ER, et al. Plant Dis. 1998 May;82(5):592. doi: 10.1094/PDIS.1998.82.5.592B. PMID: 30857003 |