Sida yellow mosaic Alagoas virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000906655.1 |
| Isolate |
Brazil |
| Release date |
2015/2/22 |
| Submitter |
Tavares,S.S., Ramos-Sobrinho,R., Gonzales-Aguilera,J., Lima,G.S.A., Assuncao,I.P., Zerbini,F.M. |
| Host |
|
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCCGCGATTTTTCCCCCCCTCCTACGTGGGCGCTCTGGTGTCCGTTGGATTGTTCCCCCCCCGACCCGCTCCCGCATTTCGCGCCGCTTTGTCTGCCATTATATGTGGTCCCTAAAGTGAAAGACATCTAACAGGCCCAATCATATTGGGCCCTGAATGATTATTTAGTTTTGAAATACTTGGGCGCGAAGTTTTTAGATTTGTATAAATTTGACCCAACTGTGATTGGACTACACAGGCTTTAATTCAAAATGTCTAAGCGGGAAGCCCCGTGGCGTTCTATGGCGGGAGTTAGTAAAGTGCGGCGCTCCCTCAATTTTTCACCTCGTGGAGGTTTGGGCTCTAGGTCAAACAAGGCCATGGAGTGGGTCAACAGGCCCATGTACAAGAAGCCCAGAATTTACCGGGCCTTCAGAACTTCTGACGTCCCTCGAGGGTGTGAAGGGCCTTGCAAGGTCCAGTCCTACGAACAGCGGCACGACATCTCACATGTCGGCAAGGTGATGTGTATATCCGATGTCACCCGTGGTAACGGTATTACGCACCGTGTGGGTAAGCGATTCTGTGTTAAGTCTGTATATATTTTAGGTAAGGTATGGATGGATGAGAATATTAAGCTCAAGAACCACACGAACAGTGTTATGTTCTGGTTGGTCAGGGATCGTAGACCGTATGGTACACCAATGGATTTTGGCCAGGTGTTCAATATGTTTGACAACGAGCCCAGTACTGCAACGGTTAAGAACGATCTTCGAGATCGTTATCAGGTTATGCACAAGTTCTATGCCAAAGTAACTGGTGGACAATATGCCAGCAATGAGCAGGCTCTGGTCAAGAGGTTCTGGAAGGTCAACAATCATGTGGTGTACAATCACCAGGAGGCTGGGAAGTACGAGAATCATACGGAGAACGCTCTGTTATTGTATATGGCATGTACTCATGCCTCAAAACCCGTGTATGCAACGCTTAAGATTCGGATCTATTTTTATGATTCGATTTCAAATTAATAAATTTTGAATTTTATTGAATGATTTTCGAGTACATGGTTTACATATGACCTGTCTGTCGAGAAACGAACAGCTCTAATTACATTATTAATTGAAATAACGCCTAATCGATCTAGATACAATAAAACTAAATACTTGAATCTATTTAAATATGTCGTCCCAGAAGCTGTCACTGATGTCGTCCAGACCTGGAAATTGAGGAATGCTTTGTGGAGATCCAATACTTTCCTCAGGTTGTGGTTGAATCTGATGTTGATGTGGTAGATCCTGGTGTTGGTGTAAACTAGATCCTCTACCTTTGTTATCTTGAAATAGAGGGGATTTGTTATCTCCCATATATAGACGCCATTCTCTGCCTGAGGCGCAGTGATGTATTCCCCTGTGCGTGAATCCATGGTTGCTGCAGTTGATGTGGACGTATATGGAGCAACCACAAGTACAGTCGATGCGTCTACGGCGAGTTGCTCTCTTCTTCGACGCTCTGTGTTGAATTTTGATAGAGAGGGGCTGTGAGGGTGATGAAGATAGCATTATGGAGCGTCCAGTTTTTTAAACTTGCATTTTCCTCCTTCTGGAGGAAATCTTTATAGCTGGCCCCCTCTCCTGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTTCCGTATTTACAATTTGACTGCCAATCCTTTTGGGACCCAATGAGTTCTTTCCAGTGCTTTAGCTTTAGGTAGTGCGGGGGGACGTCATCGATGACGTTATATGCCACGTCATTTGAATAAACCCTGGAATTAAAATCCAGGTGTCCACTTAAATAGTTATGGGCCCCCAACGCACGAGCCCACATCGTCTTCCCCGTTCGACTATCACCCTCGATGATGATACTAACAGGTCTCTCCGGCCGCGCAGCGGCACCTCTCCCGAAATAAGCATCAGCCCAATCTTGAATCTCGTCCGGAACGTTAGTGAATGAGGATAGTGGAAAAGGAGGAGTCCATGGCTCAGGAGCTTTTTTGAAAATTCTATCAAGGTTACTTGATAGGTTGTGATATTGGAAGAGAAACTTTTCCGGCAGCTTCTCTTTGATGATTCTCATAGCCTCTTCCTTTGTTCCAGCATTTAACGCCTCAGCTGCAGCGTCATTAGCTGTCTGTTGACCTCCTCTAGCACTTCTCCCGTCGATCTGGAACACTCCCCATTCGATGGTGTCACCGTCCTTCTCGACGTATGACTTAACATCGGAGCTGGATTTAGCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGGGATACCAGGTCGAACAGTCTGTTATTCGTGCAGTTGAACTTCCCTTTTCGATTGATAAGCACGTGGAGATGAGGGTGCCCATCGTCGTGTAGCTCTCTGCAGATCTTGATGAACTTCTTGTTAACTGGGGTTTGTAAGGCTTGTAACTGGGAAAGTGTGTCTTCTTTGGTTAATGAACATCGTGGATAAGTGATGAAATAATTTTTGGCTTTTATAGAAAAAGAACCCTTCCGTGGCATTTTTGTAAATAAGGCTATGTACCCCCAATTGGTTTGGCGTTCCCCCAATTGGTCTGGCTCTCAAAACTCTCATGAATTGGGGGAACTGGGGGAACTTATATACTAGAAGTTCCTAAGGGGCACGTGGSGSCCATCCGTTTAATATT
Gene Information
|
NCBI Accession
|
YP_007438875.1
|
|
Location
|
261-1016 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCTAAGCGGGAAGCCCCGTGGCGTTCTATGGCGGGAGTTAGTAAAGTGCGGCGCTCCCTCAATTTTTCACCTCGTGGAGGTTTGGGCTCTAGGTCAAACAAGGCCATGGAGTGGGTCAACAGGCCCATGTACAAGAAGCCCAGAATTTACCGGGCCTTCAGAACTTCTGACGTCCCTCGAGGGTGTGAAGGGCCTTGCAAGGTCCAGTCCTACGAACAGCGGCACGACATCTCACATGTCGGCAAGGTGATGTGTATATCCGATGTCACCCGTGGTAACGGTATTACGCACCGTGTGGGTAAGCGATTCTGTGTTAAGTCTGTATATATTTTAGGTAAGGTATGGATGGATGAGAATATTAAGCTCAAGAACCACACGAACAGTGTTATGTTCTGGTTGGTCAGGGATCGTAGACCGTATGGTACACCAATGGATTTTGGCCAGGTGTTCAATATGTTTGACAACGAGCCCAGTACTGCAACGGTTAAGAACGATCTTCGAGATCGTTATCAGGTTATGCACAAGTTCTATGCCAAAGTAACTGGTGGACAATATGCCAGCAATGAGCAGGCTCTGGTCAAGAGGTTCTGGAAGGTCAACAATCATGTGGTGTACAATCACCAGGAGGCTGGGAAGTACGAGAATCATACGGAGAACGCTCTGTTATTGTATATGGCATGTACTCATGCCTCAAAACCCGTGTATGCAACGCTTAAGATTCGGATCTATTTTTATGATTCGATTTCAAATTAA |
|
Protein Sequence
|
MSKREAPWRSMAGVSKVRRSLNFSPRGGLGSRSNKAMEWVNRPMYKKPRIYRAFRTSDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKVWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASKPVYATLKIRIYFYDSISN |
|
NCBI Accession
|
YP_007438876.1
|
|
Location
|
1013-1411 |
|
Protein Name
|
replication-enhancer protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAATACATCACTGCGCCTCAGGCAGAGAATGGCGTCTATATATGGGAGATAACAAATCCCCTCTATTTCAAGATAACAAAGGTAGAGGATCTAGTTTACACCAACACCAGGATCTACCACATCAACATCAGATTCAACCACAACCTGAGGAAAGTATTGGATCTCCACAAAGCATTCCTCAATTTCCAGGTCTGGACGACATCAGTGACAGCTTCTGGGACGACATATTTAAATAGATTCAAGTATTTAGTTTTATTGTATCTAGATCGATTAGGCGTTATTTCAATTAATAATGTAATTAGAGCTGTTCGTTTCTCGACAGACAGGTCATATGTAAACCATGTACTCGAAAATCATTCAATAAAATTCAAAATTTATTAA |
|
Protein Sequence
|
MDSRTGEYITAPQAENGVYIWEITNPLYFKITKVEDLVYTNTRIYHINIRFNHNLRKVLDLHKAFLNFQVWTTSVTASGTTYLNRFKYLVLLYLDRLGVISINNVIRAVRFSTDRSYVNHVLENHSIKFKIY |
|
NCBI Accession
|
YP_007438877.1
|
|
Location
|
1158-1547 |
|
Protein Name
|
transactivating protein |
|
Coding Region
|
ATGCTATCTTCATCACCCTCACAGCCCCTCTCTATCAAAATTCAACACAGAGCGTCGAAGAAGAGAGCAACTCGCCGTAGACGCATCGACTGTACTTGTGGTTGCTCCATATACGTCCACATCAACTGCAGCAACCATGGATTCACGCACAGGGGAATACATCACTGCGCCTCAGGCAGAGAATGGCGTCTATATATGGGAGATAACAAATCCCCTCTATTTCAAGATAACAAAGGTAGAGGATCTAGTTTACACCAACACCAGGATCTACCACATCAACATCAGATTCAACCACAACCTGAGGAAAGTATTGGATCTCCACAAAGCATTCCTCAATTTCCAGGTCTGGACGACATCAGTGACAGCTTCTGGGACGACATATTTAAATAG |
|
Protein Sequence
|
MLSSSPSQPLSIKIQHRASKKRATRRRRIDCTCGCSIYVHINCSNHGFTHRGIHHCASGREWRLYMGDNKSPLFQDNKGRGSSLHQHQDLPHQHQIQPQPEESIGSPQSIPQFPGLDDISDSFWDDIFK |
|
NCBI Accession
|
YP_007438878.1
|
|
Location
|
1468-2544 |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGCCACGGAAGGGTTCTTTTTCTATAAAAGCCAAAAATTATTTCATCACTTATCCACGATGTTCATTAACCAAAGAAGACACACTTTCCCAGTTACAAGCCTTACAAACCCCAGTTAACAAGAAGTTCATCAAGATCTGCAGAGAGCTACACGACGATGGGCACCCTCATCTCCACGTGCTTATCAATCGAAAAGGGAAGTTCAACTGCACGAATAACAGACTGTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCAAACATACAGGGAGCTAAATCCAGCTCCGATGTTAAGTCATACGTCGAGAAGGACGGTGACACCATCGAATGGGGAGTGTTCCAGATCGACGGGAGAAGTGCTAGAGGAGGTCAACAGACAGCTAATGACGCTGCAGCTGAGGCGTTAAATGCTGGAACAAAGGAAGAGGCTATGAGAATCATCAAAGAGAAGCTGCCGGAAAAGTTTCTCTTCCAATATCACAACCTATCAAGTAACCTTGATAGAATTTTCAAAAAAGCTCCTGAGCCATGGACTCCTCCTTTTCCACTATCCTCATTCACTAACGTTCCGGACGAGATTCAAGATTGGGCTGATGCTTATTTCGGGAGAGGTGCCGCTGCGCGGCCGGAGAGACCTGTTAGTATCATCATCGAGGGTGATAGTCGAACGGGGAAGACGATGTGGGCTCGTGCGTTGGGGGCCCATAACTATTTAAGTGGACACCTGGATTTTAATTCCAGGGTTTATTCAAATGACGTGGCATATAACGTCATCGATGACGTCCCCCCGCACTACCTAAAGCTAAAGCACTGGAAAGAACTCATTGGGTCCCAAAAGGATTGGCAGTCAAATTGTAAATACGGAAAGCCAGTTCAAATTAAAGGAGGGATCCCATCAATCGTGCTTTGCAATCCAGGAGAGGGGGCCAGCTATAAAGATTTCCTCCAGAAGGAGGAAAATGCAAGTTTAAAAAACTGGACGCTCCATAATGCTATCTTCATCACCCTCACAGCCCCTCTCTATCAAAATTCAACACAGAGCGTCGAAGAAGAGAGCAACTCGCCGTAG |
|
Protein Sequence
|
MPRKGSFSIKAKNYFITYPRCSLTKEDTLSQLQALQTPVNKKFIKICRELHDDGHPHLHVLINRKGKFNCTNNRLFDLVSPTRSTHFHPNIQGAKSSSDVKSYVEKDGDTIEWGVFQIDGRSARGGQQTANDAAAEALNAGTKEEAMRIIKEKLPEKFLFQYHNLSSNLDRIFKKAPEPWTPPFPLSSFTNVPDEIQDWADAYFGRGAAARPERPVSIIIEGDSRTGKTMWARALGAHNYLSGHLDFNSRVYSNDVAYNVIDDVPPHYLKLKHWKELIGSQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLQKEENASLKNWTLHNAIFITLTAPLYQNSTQSVEEESNSP |
|
NCBI Accession
|
YP_007438879.1
|
|
Location
|
2130-2387 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGCACCCTCATCTCCACGTGCTTATCAATCGAAAAGGGAAGTTCAACTGCACGAATAACAGACTGTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCAAACATACAGGGAGCTAAATCCAGCTCCGATGTTAAGTCATACGTCGAGAAGGACGGTGACACCATCGAATGGGGAGTGTTCCAGATCGACGGGAGAAGTGCTAGAGGAGGTCAACAGACAGCTAATGACGCTGCAGCTGAGGCGTTAA |
|
Protein Sequence
|
MGTLISTCLSIEKGSSTARITDCSTWYPQPGQHISIQTYRELNPAPMLSHTSRRTVTPSNGECSRSTGEVLEEVNRQLMTLQLRR |