Sida yellow leaf curl virus

Basic Information

Genus Begomovirus
NCBI Assembly GCF_002823465.1
Isolate Brazil
Release date 2018/8/25
Submitter Castillo-Urquiza,G.P., Beserra,J.E. Jr., Bruckner,F.P., Lima,A.T., Varsani,A., Alfenas-Zerbini,P., Murilo Zerbini,F., Beserra,J.E.A. Jr., Lima,A.T.M., Zerbini,P.A., Zerbini,F.M.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization

JBrowse

Genome

NC_038461
ACTGGATGGCCGCGCGATTTTTGGTGTCCCCCCCTACGTGGCGCTCTGGTGGCCGCTCAAATCCCCTCCCCCCCTGGTGTGGAGTCCCCCTTTGCCGCGCGCTTTCCTCCTTTAATTTGAATTAAAGGATTTAACCTTTGTCGGTCCAATTATAATGCGCCTGAGGAGCTTAGATATTTGTGTAAGACTTCGTTACTAAGTTTTATGAACCCTATAAAACTAAAGCAAGCATGACGTCAGTATGTAATTCGGAATGCCTAAGCGGGATCCCTCATGGCGCCAGGTGGCGGGAACCTCAAAGGTAAGCCGCACTTCCAATTTCTCACCTCGTGGAGGTGGAGGCCCAAAATTCAATAAGGCCTCTGAATGGGTCAACAGGCCTATGTATAGGAAGCCCAGGATATATCGAACGCTGAGAACGCCGGATGTTCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAATCCTATGAGCAACGTCACGATATCTCCCATGTGGGGAAGGTGCTGTGCATATCTGATGTGACACGTGGAAACGGTATTACTCACCGTGTCGGTAAGCGTTTCTGTGTTAAGTCTGTGTATATTTTAGGGAAGATATGGATGGACGAGAATATCAAGCTCAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTCAGGGACCGTAGACCGTATGGGACCCCGATGGACTTTGGCCAGGTGTTCAACATGTTCGATAACGAGCCCAGCACGGCAACCGTGAAGAACGATCTGCGTGATCGTTTCCAGGTGATGCACAAGTTCTATGCCAAGGTCACGGGTGGACAGTATGCCAGCAATGAGCAGGCGCTGGTCAAGCGCTTCTGGAAGGTCAACAATCATGTGGTGTACAATCATCAGGAAGCTGGGAAGTATGAGAATCACACGGAGAACGCTTTATTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCAACGCTTAAGATTCGAATCTATTTCTACGATTCGATCACGAATTAATAAAGCTTGAATTTTATTGAATGATTTTCCAGTACATATCTGACATATGATCTGTCAGTTGCGAAACGAACAGCTCTAATTACATTATTAACCGTAATTACTCCTAATATATCTAAATACAACATGACTAACTGTCTAAACCTAATCAAATAAGTCGTTCCAGAAGCTGTCAGGGAAGTCGTCCAGACTTGGAAGTTGAGATATGCCTTGTGGAGATCCAATGCTCTCCTGAGGTTGTGATTGAACCGGATCTGGATGTGGTACACTCTGGTCGTCGTGTACAGGAAGTCCTCTACGTGGTATATCTTGAAATACAGGGGATTTGTTATCTCCCAGGTATAGACGCCATTCTCTGCTTGAGGCACAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTGCTGCAACTGATGTGGACGTATATGGTGCACCCGCACTCGAGATCAATCCTTCTACGGCGAGTTCCTCTCTTCTTCGCCGCTCTGTGTTGAGGTTTGATACAGGGGGGAGTCGAGGAAGATGAATTTAGCATTGTGGAGTGTCCACGATTTTAGGGCTGCATTTTCCTCTTTGTCGAGGTAATCTTTATAACTGACTCCCTCCCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTACTTGCAATTTGACTGCCAATCCTTTTGGGCCCCAATCAATTCCTTCCAGTGCTTTAGCTTTAGGTATTGCGGATTGACGTCATCAATGACGTTATATTCCACTTCATTTGAATAAACTTTGGAATTGAAGTCCAGATGGCCGCTCAGGTAATTATGTGGGCCTAATGCACGAGCCCACATCGTCTTACCAGTCCTTGACCCACCTTCTACTATCAAACTAACTGGCCTCAATGGCCGCGCAGCGGAACCTCTCCCAAAATACTCATCGGCCCACTCTTGCATCTCGTCTGGCACGTTAGTGAATGAGGAGAGGGGAAATGGAGGGACCCATGGCTCCGGAGACTTCATGAATATTCTGTCCAGGTTAGCCTTGACATTGTGATAGTTTACGAGGAAAGTCTTGGGGTCTCCGGCTTTGATAATGTCAAGAGCCTCTCCCGGAGTAGCTGCATTGACGGCGTTATGGTATACGTCGTCTTTATTCCCCTTTGTTCCCCCAGACACCTTGTACTGTCCGGATTCACAATAATCACCCTCTTTGGTGATGTAATTCTTGACGGCGTTGGTGTCTTTGGCTGCCTGAATATTGGGGTGAAATCCGGCAGACCGTCTGGGGTGAGTGAGGTCGAAAAATCTAACATCCTTGATGTTGGACTTGCCGGAGAGTTGGACAAGACAGTGAAGATGAGGGAAGCCGTCGGAGTGCTCCTCTCTGGCGACTCGTATGTATGTGGGTTTAACGACTGACCATGGAAGGGATTGAAGCATCTGAAGAGCTTCATCTTTGGGTATATCGCACTGGGGATATGTTAGGAATATGTTTTTGGCAGCTAGTCTGAACTTCTGAGGATTTCGTGGCATATTTGTAAATATTGATGAGGACACCAGGGATGGCTCTCAACTTCTGTGATATTTTCTGGTGTCCTGGTGTCCAATTTATACTAGAAAGCTCTAGGTTAGTACCAGGGGCAAAAGCGGCCATCCATATAATATT

Gene Information

NCBI Accession YP_009506481.1
Location 254-1009
Gene Name CP
Protein Name coat protein
Coding Region ATGCCTAAGCGGGATCCCTCATGGCGCCAGGTGGCGGGAACCTCAAAGGTAAGCCGCACTTCCAATTTCTCACCTCGTGGAGGTGGAGGCCCAAAATTCAATAAGGCCTCTGAATGGGTCAACAGGCCTATGTATAGGAAGCCCAGGATATATCGAACGCTGAGAACGCCGGATGTTCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAATCCTATGAGCAACGTCACGATATCTCCCATGTGGGGAAGGTGCTGTGCATATCTGATGTGACACGTGGAAACGGTATTACTCACCGTGTCGGTAAGCGTTTCTGTGTTAAGTCTGTGTATATTTTAGGGAAGATATGGATGGACGAGAATATCAAGCTCAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTCAGGGACCGTAGACCGTATGGGACCCCGATGGACTTTGGCCAGGTGTTCAACATGTTCGATAACGAGCCCAGCACGGCAACCGTGAAGAACGATCTGCGTGATCGTTTCCAGGTGATGCACAAGTTCTATGCCAAGGTCACGGGTGGACAGTATGCCAGCAATGAGCAGGCGCTGGTCAAGCGCTTCTGGAAGGTCAACAATCATGTGGTGTACAATCATCAGGAAGCTGGGAAGTATGAGAATCACACGGAGAACGCTTTATTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCAACGCTTAAGATTCGAATCTATTTCTACGATTCGATCACGAATTAA
Protein Sequence MPKRDPSWRQVAGTSKVSRTSNFSPRGGGGPKFNKASEWVNRPMYRKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVLCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN

NCBI Accession YP_009506482.1
Location 1006-1404
Gene Name Ren
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGTGCCTCAAGCAGAGAATGGCGTCTATACCTGGGAGATAACAAATCCCCTGTATTTCAAGATATACCACGTAGAGGACTTCCTGTACACGACGACCAGAGTGTACCACATCCAGATCCGGTTCAATCACAACCTCAGGAGAGCATTGGATCTCCACAAGGCATATCTCAACTTCCAAGTCTGGACGACTTCCCTGACAGCTTCTGGAACGACTTATTTGATTAGGTTTAGACAGTTAGTCATGTTGTATTTAGATATATTAGGAGTAATTACGGTTAATAATGTAATTAGAGCTGTTCGTTTCGCAACTGACAGATCATATGTCAGATATGTACTGGAAAATCATTCAATAAAATTCAAGCTTTATTAA
Protein Sequence MDSRTGELITVPQAENGVYTWEITNPLYFKIYHVEDFLYTTTRVYHIQIRFNHNLRRALDLHKAYLNFQVWTTSLTASGTTYLIRFRQLVMLYLDILGVITVNNVIRAVRFATDRSYVRYVLENHSIKFKLY

NCBI Accession YP_009506483.1
Location 1151-1540
Gene Name Trap
Protein Name trans-activating protein
Coding Region ATGCTAAATTCATCTTCCTCGACTCCCCCCTGTATCAAACCTCAACACAGAGCGGCGAAGAAGAGAGGAACTCGCCGTAGAAGGATTGATCTCGAGTGCGGGTGCACCATATACGTCCACATCAGTTGCAGCAACCATGGATTCACGCACAGGGGAACTCATCACTGTGCCTCAAGCAGAGAATGGCGTCTATACCTGGGAGATAACAAATCCCCTGTATTTCAAGATATACCACGTAGAGGACTTCCTGTACACGACGACCAGAGTGTACCACATCCAGATCCGGTTCAATCACAACCTCAGGAGAGCATTGGATCTCCACAAGGCATATCTCAACTTCCAAGTCTGGACGACTTCCCTGACAGCTTCTGGAACGACTTATTTGATTAG
Protein Sequence MLNSSSSTPPCIKPQHRAAKKRGTRRRRIDLECGCTIYVHISCSNHGFTHRGTHHCASSREWRLYLGDNKSPVFQDIPRRGLPVHDDQSVPHPDPVQSQPQESIGSPQGISQLPSLDDFPDSFWNDLFD

NCBI Accession YP_009506484.1
Location 1461-2531
Gene Name Rep
Protein Name replication-associated protein
Coding Region ATGCCACGAAATCCTCAGAAGTTCAGACTAGCTGCCAAAAACATATTCCTAACATATCCCCAGTGCGATATACCCAAAGATGAAGCTCTTCAGATGCTTCAATCCCTTCCATGGTCAGTCGTTAAACCCACATACATACGAGTCGCCAGAGAGGAGCACTCCGACGGCTTCCCTCATCTTCACTGTCTTGTCCAACTCTCCGGCAAGTCCAACATCAAGGATGTTAGATTTTTCGACCTCACTCACCCCAGACGGTCTGCCGGATTTCACCCCAATATTCAGGCAGCCAAAGACACCAACGCCGTCAAGAATTACATCACCAAAGAGGGTGATTATTGTGAATCCGGACAGTACAAGGTGTCTGGGGGAACAAAGGGGAATAAAGACGACGTATACCATAACGCCGTCAATGCAGCTACTCCGGGAGAGGCTCTTGACATTATCAAAGCCGGAGACCCCAAGACTTTCCTCGTAAACTATCACAATGTCAAGGCTAACCTGGACAGAATATTCATGAAGTCTCCGGAGCCATGGGTCCCTCCATTTCCCCTCTCCTCATTCACTAACGTGCCAGACGAGATGCAAGAGTGGGCCGATGAGTATTTTGGGAGAGGTTCCGCTGCGCGGCCATTGAGGCCAGTTAGTTTGATAGTAGAAGGTGGGTCAAGGACTGGTAAGACGATGTGGGCTCGTGCATTAGGCCCACATAATTACCTGAGCGGCCATCTGGACTTCAATTCCAAAGTTTATTCAAATGAAGTGGAATATAACGTCATTGATGACGTCAATCCGCAATACCTAAAGCTAAAGCACTGGAAGGAATTGATTGGGGCCCAAAAGGATTGGCAGTCAAATTGCAAGTACGGCAAGCCTGTTCAAATTAAAGGGGGTATCCCATCAATCGTGCTCTGCAATCCTGGGGAGGGAGTCAGTTATAAAGATTACCTCGACAAAGAGGAAAATGCAGCCCTAAAATCGTGGACACTCCACAATGCTAAATTCATCTTCCTCGACTCCCCCCTGTATCAAACCTCAACACAGAGCGGCGAAGAAGAGAGGAACTCGCCGTAG
Protein Sequence MPRNPQKFRLAAKNIFLTYPQCDIPKDEALQMLQSLPWSVVKPTYIRVAREEHSDGFPHLHCLVQLSGKSNIKDVRFFDLTHPRRSAGFHPNIQAAKDTNAVKNYITKEGDYCESGQYKVSGGTKGNKDDVYHNAVNAATPGEALDIIKAGDPKTFLVNYHNVKANLDRIFMKSPEPWVPPFPLSSFTNVPDEMQEWADEYFGRGSAARPLRPVSLIVEGGSRTGKTMWARALGPHNYLSGHLDFNSKVYSNEVEYNVIDDVNPQYLKLKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGVSYKDYLDKEENAALKSWTLHNAKFIFLDSPLYQTSTQSGEEERNSP

NCBI Accession YP_009506485.1
Location 2057-2452
Gene Name AC4
Protein Name AC4
Coding Region ATGAAGCTCTTCAGATGCTTCAATCCCTTCCATGGTCAGTCGTTAAACCCACATACATACGAGTCGCCAGAGAGGAGCACTCCGACGGCTTCCCTCATCTTCACTGTCTTGTCCAACTCTCCGGCAAGTCCAACATCAAGGATGTTAGATTTTTCGACCTCACTCACCCCAGACGGTCTGCCGGATTTCACCCCAATATTCAGGCAGCCAAAGACACCAACGCCGTCAAGAATTACATCACCAAAGAGGGTGATTATTGTGAATCCGGACAGTACAAGGTGTCTGGGGGAACAAAGGGGAATAAAGACGACGTATACCATAACGCCGTCAATGCAGCTACTCCGGGAGAGGCTCTTGACATTATCAAAGCCGGAGACCCCAAGACTTTCCTCGTAA
Protein Sequence MKLFRCFNPFHGQSLNPHTYESPERSTPTASLIFTVLSNSPASPTSRMLDFSTSLTPDGLPDFTPIFRQPKTPTPSRITSPKRVIIVNPDSTRCLGEQRGIKTTYTITPSMQLLRERLLTLSKPETPRLSS

References More References in PubMed

1

An interspecies recombinant sida yellow mosaic China virus isolate and betasatellite cause a leaf curl disease in tobacco in Hainan, China.

Wang D, et al.  Plant Dis. 2023 Sep 24. doi: 10.1094/PDIS-07-23-1346-RE. Online ahead of print.

PMID: 37743589
2

Sida chlorotic leaf virus: a new recombinant begomovirus found in non-cultivated plants and Cucumis sativus L.

García-Rodríguez DA, et al.  PeerJ. 2023 Mar 22;11:e15047. doi: 10.7717/peerj.15047. eCollection 2023.

PMID: 36974135
3

Association of an alphasatellite with tomato yellow leaf curl virus and ageratum yellow vein virus in Japan is suggestive of a recent introduction.

Shahid MS, et al.  Viruses. 2014 Jan 14;6(1):189-200. doi: 10.3390/v6010189.

PMID: 24424499
4

First report of Ludwigia yellow vein Vietnam virus causing leaf curling on tobacco plants in Hainan province, China.

Wang D, et al.  Plant Dis. 2023 Apr 28. doi: 10.1094/PDIS-01-23-0034-PDN. Online ahead of print.

PMID: 37115566
5

Differential Transcriptional Responses in Two Old World Bemisia tabaci Cryptic Species Post Acquisition of Old and New World Begomoviruses.

Mugerwa H, et al.  Cells. 2022 Jun 29;11(13):2060. doi: 10.3390/cells11132060.

PMID: 35805143
6

Differential Transmission of Old and New World Begomoviruses by Middle East-Asia Minor 1 (MEAM1) and Mediterranean (MED) Cryptic Species of Bemisia tabaci.

Gautam S, et al.  Viruses. 2022 May 20;14(5):1104. doi: 10.3390/v14051104.

PMID: 35632844
7

Two new begomoviruses infecting tomato and Hibiscus sp. in the Amazon region of Brazil.

Quadros AFF, et al.  Arch Virol. 2019 Jul;164(7):1897-1901. doi: 10.1007/s00705-019-04245-6. Epub 2019 Apr 10.

PMID: 30972592
8

Revealing the Complexity of Sweepovirus-Deltasatellite-Plant Host Interactions: Expanded Natural and Experimental Helper Virus Range and Effect Dependence on Virus-Host Combination.

Ferro CG, et al.  Microorganisms. 2021 May 10;9(5):1018. doi: 10.3390/microorganisms9051018.

PMID: 34068583
9

Molecular characterization and experimental host range of an isolate of Wissadula golden mosaic St. Thomas virus.

Collins AM, et al.  Virus Genes. 2009 Dec;39(3):387-95. doi: 10.1007/s11262-009-0401-y. Epub 2009 Sep 20.

PMID: 19768650
10

Preliminary identification and coat protein gene phylogenetic relationships of begomoviruses associated with native flora and cultivated plants from the Yucatan Peninsula of Mexico.

Hernández-Zepeda C, et al.  Virus Genes. 2007 Dec;35(3):825-33. doi: 10.1007/s11262-007-0149-1. Epub 2007 Aug 8.

PMID: 17682933