Sida yellow golden mosaic virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_018582795.1 |
| Isolate |
Brazil |
| Release date |
2021/6/1 |
| Submitter |
Macedo,M., Moraes,C., Gilbertson,R., Inoue Nagata,A. |
| Host |
|
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTTCCCCCCCCTACGTGGCGCTCTGGTGCCCGTCGGATTCCCCTTTCTGGTGGACCCCTCCCCCCCTGGTGTCCGCGCGCACCTCAGCATTTAATTGAGTAAAAGCTTTAGCTTTTAATTCGTCCAATAAGATGGCCCCTGATCAGCCTAGATAATTGTGTTATCCTTGGGGCCGAAGTACCAGATGAACGGCTATAAATTAACGAAAGATTGATCTCAATCTTTAATTCAAAATGCCTAAGCGGGATGCCCCGTGGCGACTTATGGCTGGTACCTCAAAGGTAAGCCGTTCTTCCAATTCTGGGCCTCGTGGGAGTTCTGGGCCTAAATACAGCAAGTCAGCGGAATGGGTTAACAGGCCTATGTACAGAAAGCCCAGGATCTATCGAGCCTACAGAACTCCCGATGTCCCTCGAGGGTGCGAAGGACCTTGCAAGGTCCAGTCCTATGAACAGCGGCACGACATCTCACATGTCGGCAAGGTCATGTGTATATCTGACGTCACCCGAGGTAATGGCATTACTCATCGTGTTGGTAAGCGTTTTTGTGTTAAGTCTGTATATATTTTAGGCAAGATTTGGATGGACGAGAATATCAAGCTCAAGAACCACACAAACAGCGTTATGTTCTGGCTGGTCAGAGATCGTAGACCCTATGGCACACCTATGGACTTTGGCCAGGTGTTCAACATGTTCGACAACGAGCCTAGCACTGCAACTGTTAAGAACGATCTCCGTGACCGTTACCAGGTAATGCACAAGTTCTACGGCAAGGTGACAGGTGGCCAATATGCCAGCAATGAACAGGCGATAGTCAAACGCTTCTGGAAGGTCAACAATCATGTGGTGTACAACCACCAAGAAGCTGGCAAGTACGAGAATCATACGGAGAACGCATTACTACTGTACATGGCATGTACTCATGCCTCTAACCCTGTGTATGCAACGCTCAAGATTCGAATCTATTTTTACGATTCGATTATGAATTAATAAAATTTAAATTTTATTGAATGATTTTCCAGCACATGGCTCACATATTTTTTGTCCGTTGCGAAACGAACAGCTCTAATTACATTGTTAAGACAAATAACGCCTAATCTATCTAAATACAGCATAACTAAATCCTGGAACCTAGTCAAATAAGTCGTTCCAGAAGCTCTCAGAGAAGTCGTCCAGACTTGGAAGTTCAGGAATGCCTTGTGGAGACCCAGTGCTTTCCTGAGGTTGTGGTTGAACCGTATCTGCACGTGGTACACACGTGTCGTCGTGTACAGCATGTCCTCGACCCTGTATATCCTGAAATACAGGGGATTTGTTATCTCCCAGATATAGACGCCATTCTCTGCCTGACGTGCAGTGATGAGCTCCCCTGTGCGTGAATCCATGCCCGGTGCAAGCTATGTGGACGTAAATGGAGCAGCCGCAGTCCAAGTCAATTCGCCGCCTCCTGATGGCCCTCTTCTTGGTAATCCTGTGTTTCGCTTTGATAGAGGGGGGCGTCGAGGAAGAAGAATTTAGCATTTTTTAATGTCCAGGCTCTGAGTGATGAGTTTTCCTCTTTCTCGAGGAAATCTTTATAGCTGGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCGCCTTTAATTTGAACCGGCTTTCCATATTTACAATTTGACTGCCAGTCTTTTTGAGCACCCATCAATTCTTTCCAGTGCTTTAGCTTTAGATATTGCGGACTAACGTCATCAATGACGTTATACTCGACGTCATTTGAATACACCCTGGAATTGAAGTCCAGGTGTCCACTTAGATAGTTATGGGCCCCTAAAGCACGAGCCCACATCGTTTTCCCCGTTCTACTATCACCTTCAACAATTATACTAACAGGCCTGATGGGCCGCGCAGCGGAACCTCTCCCAAAATAATCATCAGCCCACTCTTGCAACTCATCTGGAACGTTAGTGAACGACGACAGGGGAAACGGAGGGACCCACGGTTCGGAAGGCTTTTTGAAGATCTTGTCCAGGTTGCTCGTCAAGTTGTGGTACTGGAACAGGAACTTTTCCGGCAACTTCTCTTTGATGATCTTCAAAGCCTCCTCCTTCGACGCTGCGTTCAACGCCTCGGCGGCTGCGTCGTTAGCTGTTTGCTGACCGCCTCTAGCACTTCGGCCGTCGATCTGGAACTGCCCCCATTCGACTGTGTCTCCATCCTTCTCGACATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGTTGACCTACTTGGGGAGACCAGGTCGAACAGTCTGCTATTTGTGCAGTTAAACTTCCCTTCGAACTGGATAAGCACGTGGAGATGTGGCTGCCCATCTTCGTGAAGCTCTCTGGCGATTTTAACGAACTTCTTGTTCGTCGGCGTCGGAATATTCCTAATTTGTTCTAGGGCTTCTTCTTTGGCCAGAGAGCATTGTGGATAAGTGAGGAAATAATTTTTGGCTTTAATAGAGAAAGAACCCTTCCGTGGCATTTTTGTAAATAAGGGTGTTCCCCCGATAGCTCTGGCTCTCAAAACTCTATACAATTGGGGGAACTGGGGGAACTTATATAGTAGAAGTTCCTAGGGGGCACGTGGCGGCCATCCGTTTAATATT
Gene Information
|
NCBI Accession
|
YP_010087357.1
|
|
Location
|
254-1009 |
|
Gene Name
|
CP |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGCCTAAGCGGGATGCCCCGTGGCGACTTATGGCTGGTACCTCAAAGGTAAGCCGTTCTTCCAATTCTGGGCCTCGTGGGAGTTCTGGGCCTAAATACAGCAAGTCAGCGGAATGGGTTAACAGGCCTATGTACAGAAAGCCCAGGATCTATCGAGCCTACAGAACTCCCGATGTCCCTCGAGGGTGCGAAGGACCTTGCAAGGTCCAGTCCTATGAACAGCGGCACGACATCTCACATGTCGGCAAGGTCATGTGTATATCTGACGTCACCCGAGGTAATGGCATTACTCATCGTGTTGGTAAGCGTTTTTGTGTTAAGTCTGTATATATTTTAGGCAAGATTTGGATGGACGAGAATATCAAGCTCAAGAACCACACAAACAGCGTTATGTTCTGGCTGGTCAGAGATCGTAGACCCTATGGCACACCTATGGACTTTGGCCAGGTGTTCAACATGTTCGACAACGAGCCTAGCACTGCAACTGTTAAGAACGATCTCCGTGACCGTTACCAGGTAATGCACAAGTTCTACGGCAAGGTGACAGGTGGCCAATATGCCAGCAATGAACAGGCGATAGTCAAACGCTTCTGGAAGGTCAACAATCATGTGGTGTACAACCACCAAGAAGCTGGCAAGTACGAGAATCATACGGAGAACGCATTACTACTGTACATGGCATGTACTCATGCCTCTAACCCTGTGTATGCAACGCTCAAGATTCGAATCTATTTTTACGATTCGATTATGAATTAA |
|
Protein Sequence
|
MPKRDAPWRLMAGTSKVSRSSNSGPRGSSGPKYSKSAEWVNRPMYRKPRIYRAYRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYGKVTGGQYASNEQAIVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIMN |
|
NCBI Accession
|
YP_010087358.1
|
|
Location
|
587-904 |
|
Gene Name
|
AC5 |
|
Protein Name
|
AC5 |
|
Coding Region
|
ATGATTCTCGTACTTGCCAGCTTCTTGGTGGTTGTACACCACATGATTGTTGACCTTCCAGAAGCGTTTGACTATCGCCTGTTCATTGCTGGCATATTGGCCACCTGTCACCTTGCCGTAGAACTTGTGCATTACCTGGTAACGGTCACGGAGATCGTTCTTAACAGTTGCAGTGCTAGGCTCGTTGTCGAACATGTTGAACACCTGGCCAAAGTCCATAGGTGTGCCATAGGGTCTACGATCTCTGACCAGCCAGAACATAACGCTGTTTGTGTGGTTCTTGAGCTTGATATTCTCGTCCATCCAAATCTTGCCTAA |
|
Protein Sequence
|
MILVLASFLVVVHHMIVDLPEAFDYRLFIAGILATCHLAVELVHYLVTVTEIVLNSCSARLVVEHVEHLAKVHRCAIGSTISDQPEHNAVCVVLELDILVHPNLA |
|
NCBI Accession
|
YP_010087359.1
|
|
Location
|
1006-1404 |
|
Gene Name
|
REn |
|
Protein Name
|
replication enhancer protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAGCTCATCACTGCACGTCAGGCAGAGAATGGCGTCTATATCTGGGAGATAACAAATCCCCTGTATTTCAGGATATACAGGGTCGAGGACATGCTGTACACGACGACACGTGTGTACCACGTGCAGATACGGTTCAACCACAACCTCAGGAAAGCACTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACTTCTCTGAGAGCTTCTGGAACGACTTATTTGACTAGGTTCCAGGATTTAGTTATGCTGTATTTAGATAGATTAGGCGTTATTTGTCTTAACAATGTAATTAGAGCTGTTCGTTTCGCAACGGACAAAAAATATGTGAGCCATGTGCTGGAAAATCATTCAATAAAATTTAAATTTTATTAA |
|
Protein Sequence
|
MDSRTGELITARQAENGVYIWEITNPLYFRIYRVEDMLYTTTRVYHVQIRFNHNLRKALGLHKAFLNFQVWTTSLRASGTTYLTRFQDLVMLYLDRLGVICLNNVIRAVRFATDKKYVSHVLENHSIKFKFY |
|
NCBI Accession
|
YP_010087360.1
|
|
Location
|
1151-1540 |
|
Gene Name
|
TrAP |
|
Protein Name
|
trans-activating protein |
|
Coding Region
|
ATGCTAAATTCTTCTTCCTCGACGCCCCCCTCTATCAAAGCGAAACACAGGATTACCAAGAAGAGGGCCATCAGGAGGCGGCGAATTGACTTGGACTGCGGCTGCTCCATTTACGTCCACATAGCTTGCACCGGGCATGGATTCACGCACAGGGGAGCTCATCACTGCACGTCAGGCAGAGAATGGCGTCTATATCTGGGAGATAACAAATCCCCTGTATTTCAGGATATACAGGGTCGAGGACATGCTGTACACGACGACACGTGTGTACCACGTGCAGATACGGTTCAACCACAACCTCAGGAAAGCACTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACTTCTCTGAGAGCTTCTGGAACGACTTATTTGACTAG |
|
Protein Sequence
|
MLNSSSSTPPSIKAKHRITKKRAIRRRRIDLDCGCSIYVHIACTGHGFTHRGAHHCTSGREWRLYLGDNKSPVFQDIQGRGHAVHDDTCVPRADTVQPQPQESTGSPQGIPELPSLDDFSESFWNDLFD |
|
NCBI Accession
|
YP_010087361.1
|
|
Location
|
1452-2537 |
|
Gene Name
|
REP |
|
Protein Name
|
replication associated protein |
|
Coding Region
|
ATGCCACGGAAGGGTTCTTTCTCTATTAAAGCCAAAAATTATTTCCTCACTTATCCACAATGCTCTCTGGCCAAAGAAGAAGCCCTAGAACAAATTAGGAATATTCCGACGCCGACGAACAAGAAGTTCGTTAAAATCGCCAGAGAGCTTCACGAAGATGGGCAGCCACATCTCCACGTGCTTATCCAGTTCGAAGGGAAGTTTAACTGCACAAATAGCAGACTGTTCGACCTGGTCTCCCCAAGTAGGTCAACACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATGTCGAGAAGGATGGAGACACAGTCGAATGGGGGCAGTTCCAGATCGACGGCCGAAGTGCTAGAGGCGGTCAGCAAACAGCTAACGACGCAGCCGCCGAGGCGTTGAACGCAGCGTCGAAGGAGGAGGCTTTGAAGATCATCAAAGAGAAGTTGCCGGAAAAGTTCCTGTTCCAGTACCACAACTTGACGAGCAACCTGGACAAGATCTTCAAAAAGCCTTCCGAACCGTGGGTCCCTCCGTTTCCCCTGTCGTCGTTCACTAACGTTCCAGATGAGTTGCAAGAGTGGGCTGATGATTATTTTGGGAGAGGTTCCGCTGCGCGGCCCATCAGGCCTGTTAGTATAATTGTTGAAGGTGATAGTAGAACGGGGAAAACGATGTGGGCTCGTGCTTTAGGGGCCCATAACTATCTAAGTGGACACCTGGACTTCAATTCCAGGGTGTATTCAAATGACGTCGAGTATAACGTCATTGATGACGTTAGTCCGCAATATCTAAAGCTAAAGCACTGGAAAGAATTGATGGGTGCTCAAAAAGACTGGCAGTCAAATTGTAAATATGGAAAGCCGGTTCAAATTAAAGGCGGTATCCCATCAATCGTGCTCTGCAATCCTGGAGAGGGGGCCAGCTATAAAGATTTCCTCGAGAAAGAGGAAAACTCATCACTCAGAGCCTGGACATTAAAAAATGCTAAATTCTTCTTCCTCGACGCCCCCCTCTATCAAAGCGAAACACAGGATTACCAAGAAGAGGGCCATCAGGAGGCGGCGAATTGA |
|
Protein Sequence
|
MPRKGSFSIKAKNYFLTYPQCSLAKEEALEQIRNIPTPTNKKFVKIARELHEDGQPHLHVLIQFEGKFNCTNSRLFDLVSPSRSTHFHPNIQGAKSSSDVKSYVEKDGDTVEWGQFQIDGRSARGGQQTANDAAAEALNAASKEEALKIIKEKLPEKFLFQYHNLTSNLDKIFKKPSEPWVPPFPLSSFTNVPDELQEWADDYFGRGSAARPIRPVSIIVEGDSRTGKTMWARALGAHNYLSGHLDFNSRVYSNDVEYNVIDDVSPQYLKLKHWKELMGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLEKEENSSLRAWTLKNAKFFFLDAPLYQSETQDYQEEGHQEAAN |
|
NCBI Accession
|
YP_010087362.1
|
|
Location
|
2123-2380 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 |
|
Coding Region
|
ATGGGCAGCCACATCTCCACGTGCTTATCCAGTTCGAAGGGAAGTTTAACTGCACAAATAGCAGACTGTTCGACCTGGTCTCCCCAAGTAGGTCAACACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATGTCGAGAAGGATGGAGACACAGTCGAATGGGGGCAGTTCCAGATCGACGGCCGAAGTGCTAGAGGCGGTCAGCAAACAGCTAACGACGCAGCCGCCGAGGCGTTGA |
|
Protein Sequence
|
MGSHISTCLSSSKGSLTAQIADCSTWSPQVGQHISIRTYRELNPAPTSSPMSRRMETQSNGGSSRSTAEVLEAVSKQLTTQPPRR |