Sida yellow golden mosaic virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_018582795.1
Isolate Brazil
Release date 2021/6/1
Submitter Macedo,M., Moraes,C., Gilbertson,R., Inoue Nagata,A.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_055548
ACCGGATGGCCGCGCGATTTTTTCCCCCCCCTACGTGGCGCTCTGGTGCCCGTCGGATTCCCCTTTCTGGTGGACCCCTCCCCCCCTGGTGTCCGCGCGCACCTCAGCATTTAATTGAGTAAAAGCTTTAGCTTTTAATTCGTCCAATAAGATGGCCCCTGATCAGCCTAGATAATTGTGTTATCCTTGGGGCCGAAGTACCAGATGAACGGCTATAAATTAACGAAAGATTGATCTCAATCTTTAATTCAAAATGCCTAAGCGGGATGCCCCGTGGCGACTTATGGCTGGTACCTCAAAGGTAAGCCGTTCTTCCAATTCTGGGCCTCGTGGGAGTTCTGGGCCTAAATACAGCAAGTCAGCGGAATGGGTTAACAGGCCTATGTACAGAAAGCCCAGGATCTATCGAGCCTACAGAACTCCCGATGTCCCTCGAGGGTGCGAAGGACCTTGCAAGGTCCAGTCCTATGAACAGCGGCACGACATCTCACATGTCGGCAAGGTCATGTGTATATCTGACGTCACCCGAGGTAATGGCATTACTCATCGTGTTGGTAAGCGTTTTTGTGTTAAGTCTGTATATATTTTAGGCAAGATTTGGATGGACGAGAATATCAAGCTCAAGAACCACACAAACAGCGTTATGTTCTGGCTGGTCAGAGATCGTAGACCCTATGGCACACCTATGGACTTTGGCCAGGTGTTCAACATGTTCGACAACGAGCCTAGCACTGCAACTGTTAAGAACGATCTCCGTGACCGTTACCAGGTAATGCACAAGTTCTACGGCAAGGTGACAGGTGGCCAATATGCCAGCAATGAACAGGCGATAGTCAAACGCTTCTGGAAGGTCAACAATCATGTGGTGTACAACCACCAAGAAGCTGGCAAGTACGAGAATCATACGGAGAACGCATTACTACTGTACATGGCATGTACTCATGCCTCTAACCCTGTGTATGCAACGCTCAAGATTCGAATCTATTTTTACGATTCGATTATGAATTAATAAAATTTAAATTTTATTGAATGATTTTCCAGCACATGGCTCACATATTTTTTGTCCGTTGCGAAACGAACAGCTCTAATTACATTGTTAAGACAAATAACGCCTAATCTATCTAAATACAGCATAACTAAATCCTGGAACCTAGTCAAATAAGTCGTTCCAGAAGCTCTCAGAGAAGTCGTCCAGACTTGGAAGTTCAGGAATGCCTTGTGGAGACCCAGTGCTTTCCTGAGGTTGTGGTTGAACCGTATCTGCACGTGGTACACACGTGTCGTCGTGTACAGCATGTCCTCGACCCTGTATATCCTGAAATACAGGGGATTTGTTATCTCCCAGATATAGACGCCATTCTCTGCCTGACGTGCAGTGATGAGCTCCCCTGTGCGTGAATCCATGCCCGGTGCAAGCTATGTGGACGTAAATGGAGCAGCCGCAGTCCAAGTCAATTCGCCGCCTCCTGATGGCCCTCTTCTTGGTAATCCTGTGTTTCGCTTTGATAGAGGGGGGCGTCGAGGAAGAAGAATTTAGCATTTTTTAATGTCCAGGCTCTGAGTGATGAGTTTTCCTCTTTCTCGAGGAAATCTTTATAGCTGGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCGCCTTTAATTTGAACCGGCTTTCCATATTTACAATTTGACTGCCAGTCTTTTTGAGCACCCATCAATTCTTTCCAGTGCTTTAGCTTTAGATATTGCGGACTAACGTCATCAATGACGTTATACTCGACGTCATTTGAATACACCCTGGAATTGAAGTCCAGGTGTCCACTTAGATAGTTATGGGCCCCTAAAGCACGAGCCCACATCGTTTTCCCCGTTCTACTATCACCTTCAACAATTATACTAACAGGCCTGATGGGCCGCGCAGCGGAACCTCTCCCAAAATAATCATCAGCCCACTCTTGCAACTCATCTGGAACGTTAGTGAACGACGACAGGGGAAACGGAGGGACCCACGGTTCGGAAGGCTTTTTGAAGATCTTGTCCAGGTTGCTCGTCAAGTTGTGGTACTGGAACAGGAACTTTTCCGGCAACTTCTCTTTGATGATCTTCAAAGCCTCCTCCTTCGACGCTGCGTTCAACGCCTCGGCGGCTGCGTCGTTAGCTGTTTGCTGACCGCCTCTAGCACTTCGGCCGTCGATCTGGAACTGCCCCCATTCGACTGTGTCTCCATCCTTCTCGACATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGTTGACCTACTTGGGGAGACCAGGTCGAACAGTCTGCTATTTGTGCAGTTAAACTTCCCTTCGAACTGGATAAGCACGTGGAGATGTGGCTGCCCATCTTCGTGAAGCTCTCTGGCGATTTTAACGAACTTCTTGTTCGTCGGCGTCGGAATATTCCTAATTTGTTCTAGGGCTTCTTCTTTGGCCAGAGAGCATTGTGGATAAGTGAGGAAATAATTTTTGGCTTTAATAGAGAAAGAACCCTTCCGTGGCATTTTTGTAAATAAGGGTGTTCCCCCGATAGCTCTGGCTCTCAAAACTCTATACAATTGGGGGAACTGGGGGAACTTATATAGTAGAAGTTCCTAGGGGGCACGTGGCGGCCATCCGTTTAATATT

Gene Information

NCBI Accession YP_010087357.1
Location 254-1009
Gene Name CP
Protein Name coat protein
Coding Region ATGCCTAAGCGGGATGCCCCGTGGCGACTTATGGCTGGTACCTCAAAGGTAAGCCGTTCTTCCAATTCTGGGCCTCGTGGGAGTTCTGGGCCTAAATACAGCAAGTCAGCGGAATGGGTTAACAGGCCTATGTACAGAAAGCCCAGGATCTATCGAGCCTACAGAACTCCCGATGTCCCTCGAGGGTGCGAAGGACCTTGCAAGGTCCAGTCCTATGAACAGCGGCACGACATCTCACATGTCGGCAAGGTCATGTGTATATCTGACGTCACCCGAGGTAATGGCATTACTCATCGTGTTGGTAAGCGTTTTTGTGTTAAGTCTGTATATATTTTAGGCAAGATTTGGATGGACGAGAATATCAAGCTCAAGAACCACACAAACAGCGTTATGTTCTGGCTGGTCAGAGATCGTAGACCCTATGGCACACCTATGGACTTTGGCCAGGTGTTCAACATGTTCGACAACGAGCCTAGCACTGCAACTGTTAAGAACGATCTCCGTGACCGTTACCAGGTAATGCACAAGTTCTACGGCAAGGTGACAGGTGGCCAATATGCCAGCAATGAACAGGCGATAGTCAAACGCTTCTGGAAGGTCAACAATCATGTGGTGTACAACCACCAAGAAGCTGGCAAGTACGAGAATCATACGGAGAACGCATTACTACTGTACATGGCATGTACTCATGCCTCTAACCCTGTGTATGCAACGCTCAAGATTCGAATCTATTTTTACGATTCGATTATGAATTAA
Protein Sequence MPKRDAPWRLMAGTSKVSRSSNSGPRGSSGPKYSKSAEWVNRPMYRKPRIYRAYRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYGKVTGGQYASNEQAIVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIMN

NCBI Accession YP_010087358.1
Location 587-904
Gene Name AC5
Protein Name AC5
Coding Region ATGATTCTCGTACTTGCCAGCTTCTTGGTGGTTGTACACCACATGATTGTTGACCTTCCAGAAGCGTTTGACTATCGCCTGTTCATTGCTGGCATATTGGCCACCTGTCACCTTGCCGTAGAACTTGTGCATTACCTGGTAACGGTCACGGAGATCGTTCTTAACAGTTGCAGTGCTAGGCTCGTTGTCGAACATGTTGAACACCTGGCCAAAGTCCATAGGTGTGCCATAGGGTCTACGATCTCTGACCAGCCAGAACATAACGCTGTTTGTGTGGTTCTTGAGCTTGATATTCTCGTCCATCCAAATCTTGCCTAA
Protein Sequence MILVLASFLVVVHHMIVDLPEAFDYRLFIAGILATCHLAVELVHYLVTVTEIVLNSCSARLVVEHVEHLAKVHRCAIGSTISDQPEHNAVCVVLELDILVHPNLA

NCBI Accession YP_010087359.1
Location 1006-1404
Gene Name REn
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAGCTCATCACTGCACGTCAGGCAGAGAATGGCGTCTATATCTGGGAGATAACAAATCCCCTGTATTTCAGGATATACAGGGTCGAGGACATGCTGTACACGACGACACGTGTGTACCACGTGCAGATACGGTTCAACCACAACCTCAGGAAAGCACTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACTTCTCTGAGAGCTTCTGGAACGACTTATTTGACTAGGTTCCAGGATTTAGTTATGCTGTATTTAGATAGATTAGGCGTTATTTGTCTTAACAATGTAATTAGAGCTGTTCGTTTCGCAACGGACAAAAAATATGTGAGCCATGTGCTGGAAAATCATTCAATAAAATTTAAATTTTATTAA
Protein Sequence MDSRTGELITARQAENGVYIWEITNPLYFRIYRVEDMLYTTTRVYHVQIRFNHNLRKALGLHKAFLNFQVWTTSLRASGTTYLTRFQDLVMLYLDRLGVICLNNVIRAVRFATDKKYVSHVLENHSIKFKFY

NCBI Accession YP_010087360.1
Location 1151-1540
Gene Name TrAP
Protein Name trans-activating protein
Coding Region ATGCTAAATTCTTCTTCCTCGACGCCCCCCTCTATCAAAGCGAAACACAGGATTACCAAGAAGAGGGCCATCAGGAGGCGGCGAATTGACTTGGACTGCGGCTGCTCCATTTACGTCCACATAGCTTGCACCGGGCATGGATTCACGCACAGGGGAGCTCATCACTGCACGTCAGGCAGAGAATGGCGTCTATATCTGGGAGATAACAAATCCCCTGTATTTCAGGATATACAGGGTCGAGGACATGCTGTACACGACGACACGTGTGTACCACGTGCAGATACGGTTCAACCACAACCTCAGGAAAGCACTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACTTCTCTGAGAGCTTCTGGAACGACTTATTTGACTAG
Protein Sequence MLNSSSSTPPSIKAKHRITKKRAIRRRRIDLDCGCSIYVHIACTGHGFTHRGAHHCTSGREWRLYLGDNKSPVFQDIQGRGHAVHDDTCVPRADTVQPQPQESTGSPQGIPELPSLDDFSESFWNDLFD

NCBI Accession YP_010087361.1
Location 1452-2537
Gene Name REP
Protein Name replication associated protein
Coding Region ATGCCACGGAAGGGTTCTTTCTCTATTAAAGCCAAAAATTATTTCCTCACTTATCCACAATGCTCTCTGGCCAAAGAAGAAGCCCTAGAACAAATTAGGAATATTCCGACGCCGACGAACAAGAAGTTCGTTAAAATCGCCAGAGAGCTTCACGAAGATGGGCAGCCACATCTCCACGTGCTTATCCAGTTCGAAGGGAAGTTTAACTGCACAAATAGCAGACTGTTCGACCTGGTCTCCCCAAGTAGGTCAACACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATGTCGAGAAGGATGGAGACACAGTCGAATGGGGGCAGTTCCAGATCGACGGCCGAAGTGCTAGAGGCGGTCAGCAAACAGCTAACGACGCAGCCGCCGAGGCGTTGAACGCAGCGTCGAAGGAGGAGGCTTTGAAGATCATCAAAGAGAAGTTGCCGGAAAAGTTCCTGTTCCAGTACCACAACTTGACGAGCAACCTGGACAAGATCTTCAAAAAGCCTTCCGAACCGTGGGTCCCTCCGTTTCCCCTGTCGTCGTTCACTAACGTTCCAGATGAGTTGCAAGAGTGGGCTGATGATTATTTTGGGAGAGGTTCCGCTGCGCGGCCCATCAGGCCTGTTAGTATAATTGTTGAAGGTGATAGTAGAACGGGGAAAACGATGTGGGCTCGTGCTTTAGGGGCCCATAACTATCTAAGTGGACACCTGGACTTCAATTCCAGGGTGTATTCAAATGACGTCGAGTATAACGTCATTGATGACGTTAGTCCGCAATATCTAAAGCTAAAGCACTGGAAAGAATTGATGGGTGCTCAAAAAGACTGGCAGTCAAATTGTAAATATGGAAAGCCGGTTCAAATTAAAGGCGGTATCCCATCAATCGTGCTCTGCAATCCTGGAGAGGGGGCCAGCTATAAAGATTTCCTCGAGAAAGAGGAAAACTCATCACTCAGAGCCTGGACATTAAAAAATGCTAAATTCTTCTTCCTCGACGCCCCCCTCTATCAAAGCGAAACACAGGATTACCAAGAAGAGGGCCATCAGGAGGCGGCGAATTGA
Protein Sequence MPRKGSFSIKAKNYFLTYPQCSLAKEEALEQIRNIPTPTNKKFVKIARELHEDGQPHLHVLIQFEGKFNCTNSRLFDLVSPSRSTHFHPNIQGAKSSSDVKSYVEKDGDTVEWGQFQIDGRSARGGQQTANDAAAEALNAASKEEALKIIKEKLPEKFLFQYHNLTSNLDKIFKKPSEPWVPPFPLSSFTNVPDELQEWADDYFGRGSAARPIRPVSIIVEGDSRTGKTMWARALGAHNYLSGHLDFNSRVYSNDVEYNVIDDVSPQYLKLKHWKELMGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLEKEENSSLRAWTLKNAKFFFLDAPLYQSETQDYQEEGHQEAAN

NCBI Accession YP_010087362.1
Location 2123-2380
Gene Name AC4
Protein Name AC4
Coding Region ATGGGCAGCCACATCTCCACGTGCTTATCCAGTTCGAAGGGAAGTTTAACTGCACAAATAGCAGACTGTTCGACCTGGTCTCCCCAAGTAGGTCAACACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATGTCGAGAAGGATGGAGACACAGTCGAATGGGGGCAGTTCCAGATCGACGGCCGAAGTGCTAGAGGCGGTCAGCAAACAGCTAACGACGCAGCCGCCGAGGCGTTGA
Protein Sequence MGSHISTCLSSSKGSLTAQIADCSTWSPQVGQHISIRTYRELNPAPTSSPMSRRMETQSNGGSSRSTAEVLEAVSKQLTTQPPRR

References More References in PubMed

1

Characterization of sida golden mottle virus isolated from Sida santaremensis Monteiro in Florida.

Al-Aqeel HA, et al.  Arch Virol. 2018 Oct;163(10):2907-2911. doi: 10.1007/s00705-018-3903-x. Epub 2018 Jun 21.

PMID: 29931396

2

Croton golden mosaic virus: a new bipartite begomovirus isolated from Croton hirtus in Colombia.

Vaca-Vaca JC, et al.  Arch Virol. 2018 Nov;163(11):3199-3202. doi: 10.1007/s00705-018-3989-1. Epub 2018 Aug 10.

PMID: 30097742

3

Macroptilium yellow mosaic virus, a New Begomovirus Infecting Macroptilium lathyroides in Cuba.

Ramos PL, et al.  Plant Dis. 2002 Sep;86(9):1049. doi: 10.1094/PDIS.2002.86.9.1049B.

PMID: 30818538

4

First report of the complete sequence of Sida golden yellow vein virus from Jamaica.

Stewart CS, et al.  Arch Virol. 2011 Aug;156(8):1481-4. doi: 10.1007/s00705-011-1030-z. Epub 2011 May 29.

PMID: 21625977

5

A New Begomovirus Inducing Yellow Mottle in Okra Crops in Mexico is Related to Sida yellow vein virus.

De La Torre-Almaraz R, et al.  Plant Dis. 2006 Mar;90(3):378. doi: 10.1094/PD-90-0378B.

PMID: 30786574

6

Molecular characterization and experimental host range of an isolate of Wissadula golden mosaic St. Thomas virus.

Collins AM, et al.  Virus Genes. 2009 Dec;39(3):387-95. doi: 10.1007/s11262-009-0401-y. Epub 2009 Sep 20.

PMID: 19768650

7

Tomato yellow spot virus, a tomato-infecting begomovirus from Brazil with a closer relationship to viruses from Sida sp., forms pseudorecombinants with begomoviruses from tomato but not from Sida.

Andrade EC, et al.  J Gen Virol. 2006 Dec;87(Pt 12):3687-3696. doi: 10.1099/vir.0.82279-0.

PMID: 17098986

8

First Report of Okra yellow mosaic Mexico virus in Okra in the United States.

Hernandez-Zepeda C, et al.  Plant Dis. 2010 Jul;94(7):924. doi: 10.1094/PDIS-94-7-0924B.

PMID: 30743573

9

Differential Transcriptional Responses in Two Old World Bemisia tabaci Cryptic Species Post Acquisition of Old and New World Begomoviruses.

Mugerwa H, et al.  Cells. 2022 Jun 29;11(13):2060. doi: 10.3390/cells11132060.

PMID: 35805143

10

Differential Transmission of Old and New World Begomoviruses by Middle East-Asia Minor 1 (MEAM1) and Mediterranean (MED) Cryptic Species of Bemisia tabaci.

Gautam S, et al.  Viruses. 2022 May 20;14(5):1104. doi: 10.3390/v14051104.

PMID: 35632844