Sida yellow blotch virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000905175.1 |
| Isolate |
Brazil |
| Release date |
2015/2/22 |
| Submitter |
Tavares,S.S., Ramos-Sobrinho,R., Gonzales-Aguilera,J., Lima,G.S.A., Assuncao,I.P., Zerbini,F.M. |
| Host |
|
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTCCACCCCCCCACGTGGCGCTCTCGTGGCCGCGCGATACTCTTTCCCTTTCCCCCCCGCGCGCGTCTCTCTCCTTTAATTTGAATTAAAGGAATTAACTTTCGTTCCGACCAATGATAATGCGCCTGACTAGCTTAGATAACTGTGAAAGACTTGGTCCCTAAGTTGTTGATTAACGGCTATAAATTAAAGGAAGACCGGGTAGGGTCTTCAATTCAAGATGCCTAAGCGGGATGCCCCGTGGCGCCTGATGGCGGGAACTTCTAAGGTTAGCCGTTCCTCGAATGCCGCTCCTCGTGGAGGTTCTGGGCCTAAGTACAACAAGGCCAATGAGTGGGTCAACAGACCCATGTACAGGAAGCCCAGGATATACCGGGCCTTCAGAACTCCAGATGTCCCTCGAGGGTGTGAAGGGCCATGCAAGGTCCAGTCCTATGAACAGCGACATGATATCTCTCATGTCGGGAAGGTGATGTGTATATCTGACGTCACCCGAGGTAATGGTATTACTCACCGTGTCGGTAAGCGTTTCTGTGTTAAGTCTGTGTATATATTAGGTAAGATATGGATGGACGAGAATATCAAGCTCAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTCAGGGACCGTAGACCGTATGGTACACCAATGGACTTTGGCCAGGTGTTCAACATGTTTGACAACGAGCCCAGCACTGCTACGGTTAAGAACGATCTTCGCGATCGTTATCAGGTCATGCACAAGTTCTATGCCAAGGTCACTGGCGGTCAATATGCCAGCAATGAACAGGCTCTGGTCAAGAGGTTCTGGAAGGTCAACAATCATGTGGTGTATAATCATCAAGAGGCTGGGAAGTACGAGAATCACACGGAGAACGCTCTGTTACTGTACATGGCATGTACTCATGCCTCTAACCCTGTGTATGCAACGCTTAAGATTCGGATCTACTTCTACGATTCGATCATGAATTAATAAAATTTGAATTTTATTGAATGATTTTCCAGTACATGGTTGACGTATGACTTGTTCGTCGCATAACGAACAGCCCTAATTACATTATTAAGAGTAATAACGCCTAATCGGTCTAGATACAGCATGACTAGATGTCTAAACCTATTCAAATAAGTCTTCCCAGAAGCTGTCAGAGAAGTCGTCCAGACTTGGAAGTTCAGGAATGCCTTGTGGAGACCCAATGCTCTCCTGAGGTTGTGGTTGAACCTTATCTGTACGTGGTACACTCTGGTCCTCGTGTACGGTGGATCCTCTACCCTGTATATCCTGAAATACAGGGGATTTGTTATCTCCCAGATATAAACGCCATTCTCTGCCTGATGCGCAGTGATGAGTTCCCCGGTGCGTGAATCCATATTTGCTGCAGTTGATGTGGACGTACAAGGAGCAGCCGCAGTCAAGGTCGATTCGTCTACGTCGAAGTGCTCTGCTCTTCGCAATCCTGTGTCGTGGTTTGATAGAGGGGGGAGTCGAGGAAGATGAATTTAGCATTGTGGAGTGTCCAGGCTCTCAATGATGCATTTTCCTCCTTGTCGAGATACTCTTTATAACTGGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCTCCTTTAATCTTTCTTGGCTTGCCGTACTTGCAATTTGACTGCCACTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTTTAGATAATGGGGTGTGACATCATCGATGACGTTATACTCAGCATCGTCTGAGTAGACCCGGGAATTGAAATCCAGATGGCCACTTAAGTAATTATGTGGGCCTAATGCTCGAGCCCACATCGTCTTGCCCGTTCGAGAGTCACCCTCAACAATTAAACTTATGGGCCTCTCTGGTCGCGCAGCGGCACCTCTCCCAAAATAATCATCGGCCCACTCTTGCATCTCGTCGGGAACGTTAGTGAAGGAGGAGAGGTGAAACGGAGGAGCCCACGGTTCCGGAGCCTTTTGAAAAATCCGAGAAGCATTTGCCATCAAGTTATGATGTTGAAGGAAGAAGTGCTGTGGTTGCTCTTCTTTGATTATTTGCAATGCTTCTTCTGCTGAAGCGGCGTTCAATGCCTTGGCATATGTGTCGTTAACCGTCTGGCAACCTCCTCTAGCACTTCTGCCGTCGATTTGGAATTCTCCCCATTCGATGGTGTCTCCGTCCTTCTCGACGTAGGACTTGACGTCGGACGATGATTTAGCTCCCTGAACGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGACCAGATCGAAGAATCTGTTATTTTTGCATTGGAATTTCCCCTCGAACTGGATAAGGACGTGGAGATGAGGCTGCCCATCTTCGTGAAGTTCTCTTGCGATTTTGATGAACTTCTTATTAGTTGGGATTGATAGGTTTAATAATTGGGAAAGTGCTTCTTCTTTAGTAAGAGAGCACTGTGGATAAGTAAGAAAATAATTTTTGGCATTTATTTTAAATGGCTTTGGTGGTGGCATTTTTGTAAATAAGGCTTGGACACCAATTGGAGTCTCTCAACTCTTTGCTATGCAATCGGTGTCTGGAGTCTCATTTATACTAGAACCCTCAATAGAACTTTAGATCCTGTTCGCACACCTGGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_007438870.1
|
|
Location
|
240-995 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGCCTAAGCGGGATGCCCCGTGGCGCCTGATGGCGGGAACTTCTAAGGTTAGCCGTTCCTCGAATGCCGCTCCTCGTGGAGGTTCTGGGCCTAAGTACAACAAGGCCAATGAGTGGGTCAACAGACCCATGTACAGGAAGCCCAGGATATACCGGGCCTTCAGAACTCCAGATGTCCCTCGAGGGTGTGAAGGGCCATGCAAGGTCCAGTCCTATGAACAGCGACATGATATCTCTCATGTCGGGAAGGTGATGTGTATATCTGACGTCACCCGAGGTAATGGTATTACTCACCGTGTCGGTAAGCGTTTCTGTGTTAAGTCTGTGTATATATTAGGTAAGATATGGATGGACGAGAATATCAAGCTCAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTCAGGGACCGTAGACCGTATGGTACACCAATGGACTTTGGCCAGGTGTTCAACATGTTTGACAACGAGCCCAGCACTGCTACGGTTAAGAACGATCTTCGCGATCGTTATCAGGTCATGCACAAGTTCTATGCCAAGGTCACTGGCGGTCAATATGCCAGCAATGAACAGGCTCTGGTCAAGAGGTTCTGGAAGGTCAACAATCATGTGGTGTATAATCATCAAGAGGCTGGGAAGTACGAGAATCACACGGAGAACGCTCTGTTACTGTACATGGCATGTACTCATGCCTCTAACCCTGTGTATGCAACGCTTAAGATTCGGATCTACTTCTACGATTCGATCATGAATTAA |
|
Protein Sequence
|
MPKRDAPWRLMAGTSKVSRSSNAAPRGGSGPKYNKANEWVNRPMYRKPRIYRAFRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIMN |
|
NCBI Accession
|
YP_007438871.1
|
|
Location
|
992-1390 |
|
Protein Name
|
replication-enhancer protein |
|
Coding Region
|
ATGGATTCACGCACCGGGGAACTCATCACTGCGCATCAGGCAGAGAATGGCGTTTATATCTGGGAGATAACAAATCCCCTGTATTTCAGGATATACAGGGTAGAGGATCCACCGTACACGAGGACCAGAGTGTACCACGTACAGATAAGGTTCAACCACAACCTCAGGAGAGCATTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACTTCTCTGACAGCTTCTGGGAAGACTTATTTGAATAGGTTTAGACATCTAGTCATGCTGTATCTAGACCGATTAGGCGTTATTACTCTTAATAATGTAATTAGGGCTGTTCGTTATGCGACGAACAAGTCATACGTCAACCATGTACTGGAAAATCATTCAATAAAATTCAAATTTTATTAA |
|
Protein Sequence
|
MDSRTGELITAHQAENGVYIWEITNPLYFRIYRVEDPPYTRTRVYHVQIRFNHNLRRALGLHKAFLNFQVWTTSLTASGKTYLNRFRHLVMLYLDRLGVITLNNVIRAVRYATNKSYVNHVLENHSIKFKFY |
|
NCBI Accession
|
YP_007438872.1
|
|
Location
|
1137-1526 |
|
Protein Name
|
transactivating protein |
|
Coding Region
|
ATGCTAAATTCATCTTCCTCGACTCCCCCCTCTATCAAACCACGACACAGGATTGCGAAGAGCAGAGCACTTCGACGTAGACGAATCGACCTTGACTGCGGCTGCTCCTTGTACGTCCACATCAACTGCAGCAAATATGGATTCACGCACCGGGGAACTCATCACTGCGCATCAGGCAGAGAATGGCGTTTATATCTGGGAGATAACAAATCCCCTGTATTTCAGGATATACAGGGTAGAGGATCCACCGTACACGAGGACCAGAGTGTACCACGTACAGATAAGGTTCAACCACAACCTCAGGAGAGCATTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACTTCTCTGACAGCTTCTGGGAAGACTTATTTGAATAG |
|
Protein Sequence
|
MLNSSSSTPPSIKPRHRIAKSRALRRRRIDLDCGCSLYVHINCSKYGFTHRGTHHCASGREWRLYLGDNKSPVFQDIQGRGSTVHEDQSVPRTDKVQPQPQESIGSPQGIPELPSLDDFSDSFWEDLFE |
|
NCBI Accession
|
YP_007438873.1
|
|
Location
|
1447-2523 |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGCCACCACCAAAGCCATTTAAAATAAATGCCAAAAATTATTTTCTTACTTATCCACAGTGCTCTCTTACTAAAGAAGAAGCACTTTCCCAATTATTAAACCTATCAATCCCAACTAATAAGAAGTTCATCAAAATCGCAAGAGAACTTCACGAAGATGGGCAGCCTCATCTCCACGTCCTTATCCAGTTCGAGGGGAAATTCCAATGCAAAAATAACAGATTCTTCGATCTGGTCTCCCCAACCAGGTCAGCACATTTCCATCCGAACGTTCAGGGAGCTAAATCATCGTCCGACGTCAAGTCCTACGTCGAGAAGGACGGAGACACCATCGAATGGGGAGAATTCCAAATCGACGGCAGAAGTGCTAGAGGAGGTTGCCAGACGGTTAACGACACATATGCCAAGGCATTGAACGCCGCTTCAGCAGAAGAAGCATTGCAAATAATCAAAGAAGAGCAACCACAGCACTTCTTCCTTCAACATCATAACTTGATGGCAAATGCTTCTCGGATTTTTCAAAAGGCTCCGGAACCGTGGGCTCCTCCGTTTCACCTCTCCTCCTTCACTAACGTTCCCGACGAGATGCAAGAGTGGGCCGATGATTATTTTGGGAGAGGTGCCGCTGCGCGACCAGAGAGGCCCATAAGTTTAATTGTTGAGGGTGACTCTCGAACGGGCAAGACGATGTGGGCTCGAGCATTAGGCCCACATAATTACTTAAGTGGCCATCTGGATTTCAATTCCCGGGTCTACTCAGACGATGCTGAGTATAACGTCATCGATGATGTCACACCCCATTATCTAAAGCTAAAGCACTGGAAGGAATTGATTGGTGCTCAAAAAGAGTGGCAGTCAAATTGCAAGTACGGCAAGCCAAGAAAGATTAAAGGAGGTATCCCATCAATCGTGCTCTGCAATCCTGGAGAGGGGGCCAGTTATAAAGAGTATCTCGACAAGGAGGAAAATGCATCATTGAGAGCCTGGACACTCCACAATGCTAAATTCATCTTCCTCGACTCCCCCCTCTATCAAACCACGACACAGGATTGCGAAGAGCAGAGCACTTCGACGTAG |
|
Protein Sequence
|
MPPPKPFKINAKNYFLTYPQCSLTKEEALSQLLNLSIPTNKKFIKIARELHEDGQPHLHVLIQFEGKFQCKNNRFFDLVSPTRSAHFHPNVQGAKSSSDVKSYVEKDGDTIEWGEFQIDGRSARGGCQTVNDTYAKALNAASAEEALQIIKEEQPQHFFLQHHNLMANASRIFQKAPEPWAPPFHLSSFTNVPDEMQEWADDYFGRGAAARPERPISLIVEGDSRTGKTMWARALGPHNYLSGHLDFNSRVYSDDAEYNVIDDVTPHYLKLKHWKELIGAQKEWQSNCKYGKPRKIKGGIPSIVLCNPGEGASYKEYLDKEENASLRAWTLHNAKFIFLDSPLYQTTTQDCEEQSTST |
|
NCBI Accession
|
YP_007438874.1
|
|
Location
|
2109-2366 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGCAGCCTCATCTCCACGTCCTTATCCAGTTCGAGGGGAAATTCCAATGCAAAAATAACAGATTCTTCGATCTGGTCTCCCCAACCAGGTCAGCACATTTCCATCCGAACGTTCAGGGAGCTAAATCATCGTCCGACGTCAAGTCCTACGTCGAGAAGGACGGAGACACCATCGAATGGGGAGAATTCCAAATCGACGGCAGAAGTGCTAGAGGAGGTTGCCAGACGGTTAACGACACATATGCCAAGGCATTGA |
|
Protein Sequence
|
MGSLISTSLSSSRGNSNAKITDSSIWSPQPGQHISIRTFRELNHRPTSSPTSRRTETPSNGENSKSTAEVLEEVARRLTTHMPRH |