Sida mottle virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000841285.1 |
| Release date |
2015/2/12 |
| Submitter |
Fontes,E.P.B., Fernandes,A.V., Mariano,A.C., Galvao,R.M., Zerbini,F.M. |
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTCCCCCCCCCCTCACGTGGCGCTCTGGTGGCCGCCCGATCCCCTTCTCCCCCGCTCCCGTGGTGGCCCCCTTGCTCGCGCGATGTTCTCCTTTAATTTAAATTAAAGGATTTAACTTTCGTCTGACCAATTATAGTGCGCCTGAGGAGCTTAGATAACTGTGTTAAGACTTGGTCCCTAAGTTTTATGACCCCTATAAAACTAAAGCAAGCGTGAAGTCAGTCTTTAATTCGAAATGCCTAAGCGGGATCCCTCATGGCGCCAGATGGCGGGAACCTCAAAGGTAAGCCGCTCTTCCAATTTCTCTCCTCGTGGAGGTATAGGCCCAAAGTTCAACAAGGCCTCTGAATGGGTTAACAGGCCCATGTATAGGAAGCCCAGGATATATCGGACGATCAGAACGCCTGATGTTCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCCTACGAGCAACGTCACGATATCTCCCATGTTGGGAAGGTGATGTGTATATCTGATGTGACACGCGGTAACGGTATTACTCACCGTGTCGGTAAGCGTTTCTGTGTTAAGTCTGTGTATATACTAGGTAAGATATGGATGGACGAGAATATCAAGCTCAAGAACCACACGAACAGTTGCATGTTCTGGTTGGTCCGGGACCGTAGACCGTATGGCACACCAATGGATTTCGGCCAGGTGTTCAACATGTTTGACAACGAGCCCAGCACTGCAACCGTGAAGAACGATCTCCGTGATCGTTTCCAGGTCATGCACAAGTTCTATGCCAAGGTCACGGGTGGACAGTATGCCAGCAATGAGCAGGCGCTGGTCAAGCGGTTTTGGAAGGTCAACAATCATGTGGTCTACAACCACCAGGAAGCTGGCAAGTACGAGAATCACACGGAGAACGCATTATTATTGTATATGGCATGTACCCATGCCTCTAACCCTGTGTATGCAACGCTGCAGATTCGAATCTATTTCTACGAGTCGATCACCAATTAATAAAGCTTGAATTTTATTTCATGATTTTCCAGTACATGTCTGACATATGATCTGTCAGTCGCAAAATAAACAGCCCTAAGTACATTATTAAGCGTGATGACGCCTAATTGGTCTAAATACATCATGACTAAACGTCTAAACCTAATCAAATAAGTCGTTCCAGAAGCTGTCAGAGATGTCGTCCAGACTTGGAAGTTCAGGAATGCCTTGTGGAGACCCAATGCTCTCCTGAGGTTGTGGTTGAACCGTATCTGTACGTGGTACACTCTGGTCGTCGTGTACAACAGGTCCTCTACGTGGTATATCTTGAAATACAGGGGATTTGTTATCTCCCAGATATAGACGCCATTCTCTGCTTGAGGCACAGTGATGAGTTCCCCGGTGCGTGAATCCATTGTTGCTGCAGCTGATGTGGACGTATATGGAGCACCCGCACTCTAGATCAATCCTTCTACGGCGAGTTCCTCTCTTCTTCGCCGCCCTGTGTCGTGGTTTGATAGAGGGGGGAGTCGAGGAATATGAATTTAGCATTGTGGAGTGTCCACGACTTTAGACCTGCATTCTCTTCTTTGTCGAGGAATTCTTTATAACTGACTCCCTCCCCAGGATTGCAGAGCACGATTGATGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTAACTTAACAATTTGACTGCCAGTCTTTTTGAGCACCAATCAGCTCCCTTCCAGTGCTTTAACTTTAGATATTGGGGTGTGACATCATCGATGACGTTGTATTCCACTTCGTTTGAATAGACCTTAGAATTGAAGTCCAGATGTCCACTCAAGTAATTATGTGGGCCTAACGAACGAGCCCACATTGTCTTCCCTGTCCTTGAATCACCTTCGACTATCAAACTCATAGGTCTCAATGGCCGCGCAGCTGAACCCCTCCCAAAATAATCGTCCGCCCACTCTTGCATCTCGACGGGAACGTTAGTGAAGGAGGAAAGTGAAAACGGCGGAGTCCATGGCTCCGGAGCCTTTAAGAAAATCCTATCTAAATTAGAATTTAGATTGTGAAACTGAAAAAGATATTTCTCAGGCAACTTCTCCCTAATGATTTGGAGAGCCGTGTGTTTATCCGGATCATTAAACGGCTCAGCTGCAGCGTCATTAGCTGTCTGTTGTCCTCCCCTTGAACTTCTTCCGTCGACCTGGAACTGTCCCCATTCCCACTGTATCTCCCGTCCTTGTAAATGTATGACTTGACGTCGGAGCTCCATTAGCTCCTGTATGTTCGGATGGAAATGTGCTGACCTAGTTGGGGATACCAGGTCGAACAGTCGGTTATTTGTGACTTGGATTTTTCCTTCCAATTGCAACAAGATGTGGAGGTGAGGTTGCCCATCTTCATGAAGCTCTCTGCATATTTTGATGAATTTCTTATTGGAGGGTAATTGAATAGCTTGCAATTGGGAAAGTGCCTCCTCTTTTGTAAGAGGGCACTGTGGATATGTAAGGAAAATGTTTTTAGCCTGCACTCTAAAACGACGTGGTTTGGATGGCATTTTTGTAAATAAGGCTGGTACTCCGGTTGAGAGCTCGCTCATAAGTCTCTATGAAATTGGAGTATGGAGTACAATATATAGTAGGAGTTCCTAAGGGGCACGTGGCGGCCATCCGTCTAATATT
Gene Information
|
NCBI Accession
|
NP_808749.1
|
|
Location
|
255-1010 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein CP |
|
Coding Region
|
ATGCCTAAGCGGGATCCCTCATGGCGCCAGATGGCGGGAACCTCAAAGGTAAGCCGCTCTTCCAATTTCTCTCCTCGTGGAGGTATAGGCCCAAAGTTCAACAAGGCCTCTGAATGGGTTAACAGGCCCATGTATAGGAAGCCCAGGATATATCGGACGATCAGAACGCCTGATGTTCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCCTACGAGCAACGTCACGATATCTCCCATGTTGGGAAGGTGATGTGTATATCTGATGTGACACGCGGTAACGGTATTACTCACCGTGTCGGTAAGCGTTTCTGTGTTAAGTCTGTGTATATACTAGGTAAGATATGGATGGACGAGAATATCAAGCTCAAGAACCACACGAACAGTTGCATGTTCTGGTTGGTCCGGGACCGTAGACCGTATGGCACACCAATGGATTTCGGCCAGGTGTTCAACATGTTTGACAACGAGCCCAGCACTGCAACCGTGAAGAACGATCTCCGTGATCGTTTCCAGGTCATGCACAAGTTCTATGCCAAGGTCACGGGTGGACAGTATGCCAGCAATGAGCAGGCGCTGGTCAAGCGGTTTTGGAAGGTCAACAATCATGTGGTCTACAACCACCAGGAAGCTGGCAAGTACGAGAATCACACGGAGAACGCATTATTATTGTATATGGCATGTACCCATGCCTCTAACCCTGTGTATGCAACGCTGCAGATTCGAATCTATTTCTACGAGTCGATCACCAATTAA |
|
Protein Sequence
|
MPKRDPSWRQMAGTSKVSRSSNFSPRGGIGPKFNKASEWVNRPMYRKPRIYRTIRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSCMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLQIRIYFYESITN |
|
NCBI Accession
|
NP_808750.1
|
|
Location
|
588-863 |
|
Gene Name
|
AC5 |
|
Protein Name
|
AC5 protein |
|
Coding Region
|
ATGATTGTTGACCTTCCAAAACCGCTTGACCAGCGCCTGCTCATTGCTGGCATACTGTCCACCCGTGACCTTGGCATAGAACTTGTGCATGACCTGGAAACGATCACGGAGATCGTTCTTCACGGTTGCAGTGCTGGGCTCGTTGTCAAACATGTTGAACACCTGGCCGAAATCCATTGGTGTGCCATACGGTCTACGGTCCCGGACCAACCAGAACATGCAACTGTTCGTGTGGTTCTTGAGCTTGATATTCTCGTCCATCCATATCTTACCTAG |
|
Protein Sequence
|
MIVDLPKPLDQRLLIAGILSTRDLGIELVHDLETITEIVLHGCSAGLVVKHVEHLAEIHWCAIRSTVPDQPEHATVRVVLELDILVHPYLT |
|
NCBI Accession
|
NP_808751.1
|
|
Location
|
1007-1405 |
|
Gene Name
|
AC3 |
|
Protein Name
|
replication enhancer protein Ren |
|
Coding Region
|
ATGGATTCACGCACCGGGGAACTCATCACTGTGCCTCAAGCAGAGAATGGCGTCTATATCTGGGAGATAACAAATCCCCTGTATTTCAAGATATACCACGTAGAGGACCTGTTGTACACGACGACCAGAGTGTACCACGTACAGATACGGTTCAACCACAACCTCAGGAGAGCATTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACATCTCTGACAGCTTCTGGAACGACTTATTTGATTAGGTTTAGACGTTTAGTCATGATGTATTTAGACCAATTAGGCGTCATCACGCTTAATAATGTACTTAGGGCTGTTTATTTTGCGACTGACAGATCATATGTCAGACATGTACTGGAAAATCATGAAATAAAATTCAAGCTTTATTAA |
|
Protein Sequence
|
MDSRTGELITVPQAENGVYIWEITNPLYFKIYHVEDLLYTTTRVYHVQIRFNHNLRRALGLHKAFLNFQVWTTSLTASGTTYLIRFRRLVMMYLDQLGVITLNNVLRAVYFATDRSYVRHVLENHEIKFKLY |
|
NCBI Accession
|
NP_808752.1
|
|
Location
|
1152-1541 |
|
Gene Name
|
AC2 |
|
Protein Name
|
transactivator protein Trap |
|
Coding Region
|
ATGCTAAATTCATATTCCTCGACTCCCCCCTCTATCAAACCACGACACAGGGCGGCGAAGAAGAGAGGAACTCGCCGTAGAAGGATTGATCTAGAGTGCGGGTGCTCCATATACGTCCACATCAGCTGCAGCAACAATGGATTCACGCACCGGGGAACTCATCACTGTGCCTCAAGCAGAGAATGGCGTCTATATCTGGGAGATAACAAATCCCCTGTATTTCAAGATATACCACGTAGAGGACCTGTTGTACACGACGACCAGAGTGTACCACGTACAGATACGGTTCAACCACAACCTCAGGAGAGCATTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACATCTCTGACAGCTTCTGGAACGACTTATTTGATTAG |
|
Protein Sequence
|
MLNSYSSTPPSIKPRHRAAKKRGTRRRRIDLECGCSIYVHISCSNNGFTHRGTHHCASSREWRLYLGDNKSPVFQDIPRRGPVVHDDQSVPRTDTVQPQPQESIGSPQGIPELPSLDDISDSFWNDLFD |
|
NCBI Accession
|
NP_808753.1
|
|
Location
|
1462-2544 |
|
Gene Name
|
AC1 |
|
Protein Name
|
replication associated protein Rep |
|
Coding Region
|
ATGCCATCCAAACCACGTCGTTTTAGAGTGCAGGCTAAAAACATTTTCCTTACATATCCACAGTGCCCTCTTACAAAAGAGGAGGCACTTTCCCAATTGCAAGCTATTCAATTACCCTCCAATAAGAAATTCATCAAAATATGCAGAGAGCTTCATGAAGATGGGCAACCTCACCTCCACATCTTGTTGCAATTGGAAGGAAAAATCCAAGTCACAAATAACCGACTGTTCGACCTGGTATCCCCAACTAGGTCAGCACATTTCCATCCGAACATACAGGAGCTAATGGAGCTCCGACGTCAAGTCATACATTTACAAGGACGGGAGATACAGTGGGAATGGGGACAGTTCCAGGTCGACGGAAGAAGTTCAAGGGGAGGACAACAGACAGCTAATGACGCTGCAGCTGAGCCGTTTAATGATCCGGATAAACACACGGCTCTCCAAATCATTAGGGAGAAGTTGCCTGAGAAATATCTTTTTCAGTTTCACAATCTAAATTCTAATTTAGATAGGATTTTCTTAAAGGCTCCGGAGCCATGGACTCCGCCGTTTTCACTTTCCTCCTTCACTAACGTTCCCGTCGAGATGCAAGAGTGGGCGGACGATTATTTTGGGAGGGGTTCAGCTGCGCGGCCATTGAGACCTATGAGTTTGATAGTCGAAGGTGATTCAAGGACAGGGAAGACAATGTGGGCTCGTTCGTTAGGCCCACATAATTACTTGAGTGGACATCTGGACTTCAATTCTAAGGTCTATTCAAACGAAGTGGAATACAACGTCATCGATGATGTCACACCCCAATATCTAAAGTTAAAGCACTGGAAGGGAGCTGATTGGTGCTCAAAAAGACTGGCAGTCAAATTGTTAAGTTACGGAAAGCCAGTTCAAATTAAAGGTGGAATACCATCAATCGTGCTCTGCAATCCTGGGGAGGGAGTCAGTTATAAAGAATTCCTCGACAAAGAAGAGAATGCAGGTCTAAAGTCGTGGACACTCCACAATGCTAAATTCATATTCCTCGACTCCCCCCTCTATCAAACCACGACACAGGGCGGCGAAGAAGAGAGGAACTCGCCGTAG |
|
Protein Sequence
|
MPSKPRRFRVQAKNIFLTYPQCPLTKEEALSQLQAIQLPSNKKFIKICRELHEDGQPHLHILLQLEGKIQVTNNRLFDLVSPTRSAHFHPNIQELMELRRQVIHLQGREIQWEWGQFQVDGRSSRGGQQTANDAAAEPFNDPDKHTALQIIREKLPEKYLFQFHNLNSNLDRIFLKAPEPWTPPFSLSSFTNVPVEMQEWADDYFGRGSAARPLRPMSLIVEGDSRTGKTMWARSLGPHNYLSGHLDFNSKVYSNEVEYNVIDDVTPQYLKLKHWKGADWCSKRLAVKLLSYGKPVQIKGGIPSIVLCNPGEGVSYKEFLDKEENAGLKSWTLHNAKFIFLDSPLYQTTTQGGEEERNSP |
|
NCBI Accession
|
NP_808754.1
|
|
Location
|
2259-2390 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGAAGATGGGCAACCTCACCTCCACATCTTGTTGCAATTGGAAGGAAAAATCCAAGTCACAAATAACCGACTGTTCGACCTGGTATCCCCAACTAGGTCAGCACATTTCCATCCGAACATACAGGAGCTAA |
|
Protein Sequence
|
MKMGNLTSTSCCNWKEKSKSQITDCSTWYPQLGQHISIRTYRS |