Sida mottle virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000841285.1
Release date 2015/2/12
Submitter Fontes,E.P.B., Fernandes,A.V., Mariano,A.C., Galvao,R.M., Zerbini,F.M.
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_004637
ACCGGATGGCCGCGCGATTTTCCCCCCCCCCTCACGTGGCGCTCTGGTGGCCGCCCGATCCCCTTCTCCCCCGCTCCCGTGGTGGCCCCCTTGCTCGCGCGATGTTCTCCTTTAATTTAAATTAAAGGATTTAACTTTCGTCTGACCAATTATAGTGCGCCTGAGGAGCTTAGATAACTGTGTTAAGACTTGGTCCCTAAGTTTTATGACCCCTATAAAACTAAAGCAAGCGTGAAGTCAGTCTTTAATTCGAAATGCCTAAGCGGGATCCCTCATGGCGCCAGATGGCGGGAACCTCAAAGGTAAGCCGCTCTTCCAATTTCTCTCCTCGTGGAGGTATAGGCCCAAAGTTCAACAAGGCCTCTGAATGGGTTAACAGGCCCATGTATAGGAAGCCCAGGATATATCGGACGATCAGAACGCCTGATGTTCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCCTACGAGCAACGTCACGATATCTCCCATGTTGGGAAGGTGATGTGTATATCTGATGTGACACGCGGTAACGGTATTACTCACCGTGTCGGTAAGCGTTTCTGTGTTAAGTCTGTGTATATACTAGGTAAGATATGGATGGACGAGAATATCAAGCTCAAGAACCACACGAACAGTTGCATGTTCTGGTTGGTCCGGGACCGTAGACCGTATGGCACACCAATGGATTTCGGCCAGGTGTTCAACATGTTTGACAACGAGCCCAGCACTGCAACCGTGAAGAACGATCTCCGTGATCGTTTCCAGGTCATGCACAAGTTCTATGCCAAGGTCACGGGTGGACAGTATGCCAGCAATGAGCAGGCGCTGGTCAAGCGGTTTTGGAAGGTCAACAATCATGTGGTCTACAACCACCAGGAAGCTGGCAAGTACGAGAATCACACGGAGAACGCATTATTATTGTATATGGCATGTACCCATGCCTCTAACCCTGTGTATGCAACGCTGCAGATTCGAATCTATTTCTACGAGTCGATCACCAATTAATAAAGCTTGAATTTTATTTCATGATTTTCCAGTACATGTCTGACATATGATCTGTCAGTCGCAAAATAAACAGCCCTAAGTACATTATTAAGCGTGATGACGCCTAATTGGTCTAAATACATCATGACTAAACGTCTAAACCTAATCAAATAAGTCGTTCCAGAAGCTGTCAGAGATGTCGTCCAGACTTGGAAGTTCAGGAATGCCTTGTGGAGACCCAATGCTCTCCTGAGGTTGTGGTTGAACCGTATCTGTACGTGGTACACTCTGGTCGTCGTGTACAACAGGTCCTCTACGTGGTATATCTTGAAATACAGGGGATTTGTTATCTCCCAGATATAGACGCCATTCTCTGCTTGAGGCACAGTGATGAGTTCCCCGGTGCGTGAATCCATTGTTGCTGCAGCTGATGTGGACGTATATGGAGCACCCGCACTCTAGATCAATCCTTCTACGGCGAGTTCCTCTCTTCTTCGCCGCCCTGTGTCGTGGTTTGATAGAGGGGGGAGTCGAGGAATATGAATTTAGCATTGTGGAGTGTCCACGACTTTAGACCTGCATTCTCTTCTTTGTCGAGGAATTCTTTATAACTGACTCCCTCCCCAGGATTGCAGAGCACGATTGATGGTATTCCACCTTTAATTTGAACTGGCTTTCCGTAACTTAACAATTTGACTGCCAGTCTTTTTGAGCACCAATCAGCTCCCTTCCAGTGCTTTAACTTTAGATATTGGGGTGTGACATCATCGATGACGTTGTATTCCACTTCGTTTGAATAGACCTTAGAATTGAAGTCCAGATGTCCACTCAAGTAATTATGTGGGCCTAACGAACGAGCCCACATTGTCTTCCCTGTCCTTGAATCACCTTCGACTATCAAACTCATAGGTCTCAATGGCCGCGCAGCTGAACCCCTCCCAAAATAATCGTCCGCCCACTCTTGCATCTCGACGGGAACGTTAGTGAAGGAGGAAAGTGAAAACGGCGGAGTCCATGGCTCCGGAGCCTTTAAGAAAATCCTATCTAAATTAGAATTTAGATTGTGAAACTGAAAAAGATATTTCTCAGGCAACTTCTCCCTAATGATTTGGAGAGCCGTGTGTTTATCCGGATCATTAAACGGCTCAGCTGCAGCGTCATTAGCTGTCTGTTGTCCTCCCCTTGAACTTCTTCCGTCGACCTGGAACTGTCCCCATTCCCACTGTATCTCCCGTCCTTGTAAATGTATGACTTGACGTCGGAGCTCCATTAGCTCCTGTATGTTCGGATGGAAATGTGCTGACCTAGTTGGGGATACCAGGTCGAACAGTCGGTTATTTGTGACTTGGATTTTTCCTTCCAATTGCAACAAGATGTGGAGGTGAGGTTGCCCATCTTCATGAAGCTCTCTGCATATTTTGATGAATTTCTTATTGGAGGGTAATTGAATAGCTTGCAATTGGGAAAGTGCCTCCTCTTTTGTAAGAGGGCACTGTGGATATGTAAGGAAAATGTTTTTAGCCTGCACTCTAAAACGACGTGGTTTGGATGGCATTTTTGTAAATAAGGCTGGTACTCCGGTTGAGAGCTCGCTCATAAGTCTCTATGAAATTGGAGTATGGAGTACAATATATAGTAGGAGTTCCTAAGGGGCACGTGGCGGCCATCCGTCTAATATT

Gene Information

NCBI Accession NP_808749.1
Location 255-1010
Gene Name AV1
Protein Name coat protein CP
Coding Region ATGCCTAAGCGGGATCCCTCATGGCGCCAGATGGCGGGAACCTCAAAGGTAAGCCGCTCTTCCAATTTCTCTCCTCGTGGAGGTATAGGCCCAAAGTTCAACAAGGCCTCTGAATGGGTTAACAGGCCCATGTATAGGAAGCCCAGGATATATCGGACGATCAGAACGCCTGATGTTCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCCTACGAGCAACGTCACGATATCTCCCATGTTGGGAAGGTGATGTGTATATCTGATGTGACACGCGGTAACGGTATTACTCACCGTGTCGGTAAGCGTTTCTGTGTTAAGTCTGTGTATATACTAGGTAAGATATGGATGGACGAGAATATCAAGCTCAAGAACCACACGAACAGTTGCATGTTCTGGTTGGTCCGGGACCGTAGACCGTATGGCACACCAATGGATTTCGGCCAGGTGTTCAACATGTTTGACAACGAGCCCAGCACTGCAACCGTGAAGAACGATCTCCGTGATCGTTTCCAGGTCATGCACAAGTTCTATGCCAAGGTCACGGGTGGACAGTATGCCAGCAATGAGCAGGCGCTGGTCAAGCGGTTTTGGAAGGTCAACAATCATGTGGTCTACAACCACCAGGAAGCTGGCAAGTACGAGAATCACACGGAGAACGCATTATTATTGTATATGGCATGTACCCATGCCTCTAACCCTGTGTATGCAACGCTGCAGATTCGAATCTATTTCTACGAGTCGATCACCAATTAA
Protein Sequence MPKRDPSWRQMAGTSKVSRSSNFSPRGGIGPKFNKASEWVNRPMYRKPRIYRTIRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSCMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLQIRIYFYESITN

NCBI Accession NP_808750.1
Location 588-863
Gene Name AC5
Protein Name AC5 protein
Coding Region ATGATTGTTGACCTTCCAAAACCGCTTGACCAGCGCCTGCTCATTGCTGGCATACTGTCCACCCGTGACCTTGGCATAGAACTTGTGCATGACCTGGAAACGATCACGGAGATCGTTCTTCACGGTTGCAGTGCTGGGCTCGTTGTCAAACATGTTGAACACCTGGCCGAAATCCATTGGTGTGCCATACGGTCTACGGTCCCGGACCAACCAGAACATGCAACTGTTCGTGTGGTTCTTGAGCTTGATATTCTCGTCCATCCATATCTTACCTAG
Protein Sequence MIVDLPKPLDQRLLIAGILSTRDLGIELVHDLETITEIVLHGCSAGLVVKHVEHLAEIHWCAIRSTVPDQPEHATVRVVLELDILVHPYLT

NCBI Accession NP_808751.1
Location 1007-1405
Gene Name AC3
Protein Name replication enhancer protein Ren
Coding Region ATGGATTCACGCACCGGGGAACTCATCACTGTGCCTCAAGCAGAGAATGGCGTCTATATCTGGGAGATAACAAATCCCCTGTATTTCAAGATATACCACGTAGAGGACCTGTTGTACACGACGACCAGAGTGTACCACGTACAGATACGGTTCAACCACAACCTCAGGAGAGCATTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACATCTCTGACAGCTTCTGGAACGACTTATTTGATTAGGTTTAGACGTTTAGTCATGATGTATTTAGACCAATTAGGCGTCATCACGCTTAATAATGTACTTAGGGCTGTTTATTTTGCGACTGACAGATCATATGTCAGACATGTACTGGAAAATCATGAAATAAAATTCAAGCTTTATTAA
Protein Sequence MDSRTGELITVPQAENGVYIWEITNPLYFKIYHVEDLLYTTTRVYHVQIRFNHNLRRALGLHKAFLNFQVWTTSLTASGTTYLIRFRRLVMMYLDQLGVITLNNVLRAVYFATDRSYVRHVLENHEIKFKLY

NCBI Accession NP_808752.1
Location 1152-1541
Gene Name AC2
Protein Name transactivator protein Trap
Coding Region ATGCTAAATTCATATTCCTCGACTCCCCCCTCTATCAAACCACGACACAGGGCGGCGAAGAAGAGAGGAACTCGCCGTAGAAGGATTGATCTAGAGTGCGGGTGCTCCATATACGTCCACATCAGCTGCAGCAACAATGGATTCACGCACCGGGGAACTCATCACTGTGCCTCAAGCAGAGAATGGCGTCTATATCTGGGAGATAACAAATCCCCTGTATTTCAAGATATACCACGTAGAGGACCTGTTGTACACGACGACCAGAGTGTACCACGTACAGATACGGTTCAACCACAACCTCAGGAGAGCATTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACATCTCTGACAGCTTCTGGAACGACTTATTTGATTAG
Protein Sequence MLNSYSSTPPSIKPRHRAAKKRGTRRRRIDLECGCSIYVHISCSNNGFTHRGTHHCASSREWRLYLGDNKSPVFQDIPRRGPVVHDDQSVPRTDTVQPQPQESIGSPQGIPELPSLDDISDSFWNDLFD

NCBI Accession NP_808753.1
Location 1462-2544
Gene Name AC1
Protein Name replication associated protein Rep
Coding Region ATGCCATCCAAACCACGTCGTTTTAGAGTGCAGGCTAAAAACATTTTCCTTACATATCCACAGTGCCCTCTTACAAAAGAGGAGGCACTTTCCCAATTGCAAGCTATTCAATTACCCTCCAATAAGAAATTCATCAAAATATGCAGAGAGCTTCATGAAGATGGGCAACCTCACCTCCACATCTTGTTGCAATTGGAAGGAAAAATCCAAGTCACAAATAACCGACTGTTCGACCTGGTATCCCCAACTAGGTCAGCACATTTCCATCCGAACATACAGGAGCTAATGGAGCTCCGACGTCAAGTCATACATTTACAAGGACGGGAGATACAGTGGGAATGGGGACAGTTCCAGGTCGACGGAAGAAGTTCAAGGGGAGGACAACAGACAGCTAATGACGCTGCAGCTGAGCCGTTTAATGATCCGGATAAACACACGGCTCTCCAAATCATTAGGGAGAAGTTGCCTGAGAAATATCTTTTTCAGTTTCACAATCTAAATTCTAATTTAGATAGGATTTTCTTAAAGGCTCCGGAGCCATGGACTCCGCCGTTTTCACTTTCCTCCTTCACTAACGTTCCCGTCGAGATGCAAGAGTGGGCGGACGATTATTTTGGGAGGGGTTCAGCTGCGCGGCCATTGAGACCTATGAGTTTGATAGTCGAAGGTGATTCAAGGACAGGGAAGACAATGTGGGCTCGTTCGTTAGGCCCACATAATTACTTGAGTGGACATCTGGACTTCAATTCTAAGGTCTATTCAAACGAAGTGGAATACAACGTCATCGATGATGTCACACCCCAATATCTAAAGTTAAAGCACTGGAAGGGAGCTGATTGGTGCTCAAAAAGACTGGCAGTCAAATTGTTAAGTTACGGAAAGCCAGTTCAAATTAAAGGTGGAATACCATCAATCGTGCTCTGCAATCCTGGGGAGGGAGTCAGTTATAAAGAATTCCTCGACAAAGAAGAGAATGCAGGTCTAAAGTCGTGGACACTCCACAATGCTAAATTCATATTCCTCGACTCCCCCCTCTATCAAACCACGACACAGGGCGGCGAAGAAGAGAGGAACTCGCCGTAG
Protein Sequence MPSKPRRFRVQAKNIFLTYPQCPLTKEEALSQLQAIQLPSNKKFIKICRELHEDGQPHLHILLQLEGKIQVTNNRLFDLVSPTRSAHFHPNIQELMELRRQVIHLQGREIQWEWGQFQVDGRSSRGGQQTANDAAAEPFNDPDKHTALQIIREKLPEKYLFQFHNLNSNLDRIFLKAPEPWTPPFSLSSFTNVPVEMQEWADDYFGRGSAARPLRPMSLIVEGDSRTGKTMWARSLGPHNYLSGHLDFNSKVYSNEVEYNVIDDVTPQYLKLKHWKGADWCSKRLAVKLLSYGKPVQIKGGIPSIVLCNPGEGVSYKEFLDKEENAGLKSWTLHNAKFIFLDSPLYQTTTQGGEEERNSP

NCBI Accession NP_808754.1
Location 2259-2390
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGAAGATGGGCAACCTCACCTCCACATCTTGTTGCAATTGGAAGGAAAAATCCAAGTCACAAATAACCGACTGTTCGACCTGGTATCCCCAACTAGGTCAGCACATTTCCATCCGAACATACAGGAGCTAA
Protein Sequence MKMGNLTSTSCCNWKEKSKSQITDCSTWYPQLGQHISIRTYRS

References More References in PubMed

1

Characterization of sida golden mottle virus isolated from Sida santaremensis Monteiro in Florida.

Al-Aqeel HA, et al.  Arch Virol. 2018 Oct;163(10):2907-2911. doi: 10.1007/s00705-018-3903-x. Epub 2018 Jun 21.

PMID: 29931396

2

A New Begomovirus Inducing Yellow Mottle in Okra Crops in Mexico is Related to Sida yellow vein virus.

De La Torre-Almaraz R, et al.  Plant Dis. 2006 Mar;90(3):378. doi: 10.1094/PD-90-0378B.

PMID: 30786574

3

Molecular and biological characterization of corchorus mottle virus, a new begomovirus from Brazil.

Blawid R, et al.  Arch Virol. 2013 Dec;158(12):2603-9. doi: 10.1007/s00705-013-1764-x. Epub 2013 Jun 29.

PMID: 23812656

4

Tomato mottle Taino virus pseudorecombines with PYMV but not with ToMoV: implications for the delimitation of cis- and trans-acting replication specificity determinants.

Ramos PL, et al.  Arch Virol. 2003 Sep;148(9):1697-712. doi: 10.1007/s00705-003-0136-3.

PMID: 14505083

5

Begomoviruses infecting weeds in Cuba: increased host range and a novel virus infecting Sida rhombifolia.

Fiallo-Olivé E, et al.  Arch Virol. 2012 Jan;157(1):141-6. doi: 10.1007/s00705-011-1123-8. Epub 2011 Oct 1.

PMID: 21964921

6

Two new begomoviruses infecting tomato and Hibiscus sp. in the Amazon region of Brazil.

Quadros AFF, et al.  Arch Virol. 2019 Jul;164(7):1897-1901. doi: 10.1007/s00705-019-04245-6. Epub 2019 Apr 10.

PMID: 30972592

7

Complete sequence of a new bipartite begomovirus infecting Sida sp. in Northeastern Brazil.

Macedo MA, et al.  Arch Virol. 2020 Jan;165(1):253-256. doi: 10.1007/s00705-019-04458-9. Epub 2019 Nov 22.

PMID: 31758274

8

First Report of Sida golden mosaic virus Infecting Snap Bean (Phaseolus vulgaris) in Florida.

Durham TC, et al.  Plant Dis. 2010 Apr;94(4):487. doi: 10.1094/PDIS-94-4-0487B.

PMID: 30754495

9

Croton golden mosaic virus: a new bipartite begomovirus isolated from Croton hirtus in Colombia.

Vaca-Vaca JC, et al.  Arch Virol. 2018 Nov;163(11):3199-3202. doi: 10.1007/s00705-018-3989-1. Epub 2018 Aug 10.

PMID: 30097742

10

Circomics of Cuban geminiviruses reveals the first alpha-satellite DNA in the Caribbean.

Jeske H, et al.  Virus Genes. 2014 Oct;49(2):312-24. doi: 10.1007/s11262-014-1090-8. Epub 2014 Jun 19.

PMID: 24943118