Sida mottle virus
Basic Information
| Genus | Begomovirus |
|---|---|
| NCBI Assembly | GCF_000841285.1 |
| Release date | 2015/2/12 |
| Submitter | Fontes,E.P.B., Fernandes,A.V., Mariano,A.C., Galvao,R.M., Zerbini,F.M. |
| Vector | |
| Download | Genome |GFF3 |PEP |CDS |
Genomic Organization
JBrowse
Genome
NC_004637
Gene Information
| NCBI Accession | NP_808749.1 |
|---|---|
| Location | 255-1010 |
| Gene Name | AV1 |
| Protein Name | coat protein CP |
| Coding Region | ATGCCTAAGCGGGATCCCTCATGGCGCCAGATGGCGGGAACCTCAAAGGTAAGCCGCTCTTCCAATTTCTCTCCTCGTGGAGGTATAGGCCCAAAGTTCAACAAGGCCTCTGAATGGGTTAACAGGCCCATGTATAGGAAGCCCAGGATATATCGGACGATCAGAACGCCTGATGTTCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCCTACGAGCAACGTCACGATATCTCCCATGTTGGGAAGGTGATGTGTATATCTGATGTGACACGCGGTAACGGTATTACTCACCGTGTCGGTAAGCGTTTCTGTGTTAAGTCTGTGTATATACTAGGTAAGATATGGATGGACGAGAATATCAAGCTCAAGAACCACACGAACAGTTGCATGTTCTGGTTGGTCCGGGACCGTAGACCGTATGGCACACCAATGGATTTCGGCCAGGTGTTCAACATGTTTGACAACGAGCCCAGCACTGCAACCGTGAAGAACGATCTCCGTGATCGTTTCCAGGTCATGCACAAGTTCTATGCCAAGGTCACGGGTGGACAGTATGCCAGCAATGAGCAGGCGCTGGTCAAGCGGTTTTGGAAGGTCAACAATCATGTGGTCTACAACCACCAGGAAGCTGGCAAGTACGAGAATCACACGGAGAACGCATTATTATTGTATATGGCATGTACCCATGCCTCTAACCCTGTGTATGCAACGCTGCAGATTCGAATCTATTTCTACGAGTCGATCACCAATTAA |
| Protein Sequence | MPKRDPSWRQMAGTSKVSRSSNFSPRGGIGPKFNKASEWVNRPMYRKPRIYRTIRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSCMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLQIRIYFYESITN |
| NCBI Accession | NP_808750.1 |
|---|---|
| Location | 588-863 |
| Gene Name | AC5 |
| Protein Name | AC5 protein |
| Coding Region | ATGATTGTTGACCTTCCAAAACCGCTTGACCAGCGCCTGCTCATTGCTGGCATACTGTCCACCCGTGACCTTGGCATAGAACTTGTGCATGACCTGGAAACGATCACGGAGATCGTTCTTCACGGTTGCAGTGCTGGGCTCGTTGTCAAACATGTTGAACACCTGGCCGAAATCCATTGGTGTGCCATACGGTCTACGGTCCCGGACCAACCAGAACATGCAACTGTTCGTGTGGTTCTTGAGCTTGATATTCTCGTCCATCCATATCTTACCTAG |
| Protein Sequence | MIVDLPKPLDQRLLIAGILSTRDLGIELVHDLETITEIVLHGCSAGLVVKHVEHLAEIHWCAIRSTVPDQPEHATVRVVLELDILVHPYLT |
| NCBI Accession | NP_808751.1 |
|---|---|
| Location | 1007-1405 |
| Gene Name | AC3 |
| Protein Name | replication enhancer protein Ren |
| Coding Region | ATGGATTCACGCACCGGGGAACTCATCACTGTGCCTCAAGCAGAGAATGGCGTCTATATCTGGGAGATAACAAATCCCCTGTATTTCAAGATATACCACGTAGAGGACCTGTTGTACACGACGACCAGAGTGTACCACGTACAGATACGGTTCAACCACAACCTCAGGAGAGCATTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACATCTCTGACAGCTTCTGGAACGACTTATTTGATTAGGTTTAGACGTTTAGTCATGATGTATTTAGACCAATTAGGCGTCATCACGCTTAATAATGTACTTAGGGCTGTTTATTTTGCGACTGACAGATCATATGTCAGACATGTACTGGAAAATCATGAAATAAAATTCAAGCTTTATTAA |
| Protein Sequence | MDSRTGELITVPQAENGVYIWEITNPLYFKIYHVEDLLYTTTRVYHVQIRFNHNLRRALGLHKAFLNFQVWTTSLTASGTTYLIRFRRLVMMYLDQLGVITLNNVLRAVYFATDRSYVRHVLENHEIKFKLY |
| NCBI Accession | NP_808752.1 |
|---|---|
| Location | 1152-1541 |
| Gene Name | AC2 |
| Protein Name | transactivator protein Trap |
| Coding Region | ATGCTAAATTCATATTCCTCGACTCCCCCCTCTATCAAACCACGACACAGGGCGGCGAAGAAGAGAGGAACTCGCCGTAGAAGGATTGATCTAGAGTGCGGGTGCTCCATATACGTCCACATCAGCTGCAGCAACAATGGATTCACGCACCGGGGAACTCATCACTGTGCCTCAAGCAGAGAATGGCGTCTATATCTGGGAGATAACAAATCCCCTGTATTTCAAGATATACCACGTAGAGGACCTGTTGTACACGACGACCAGAGTGTACCACGTACAGATACGGTTCAACCACAACCTCAGGAGAGCATTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACATCTCTGACAGCTTCTGGAACGACTTATTTGATTAG |
| Protein Sequence | MLNSYSSTPPSIKPRHRAAKKRGTRRRRIDLECGCSIYVHISCSNNGFTHRGTHHCASSREWRLYLGDNKSPVFQDIPRRGPVVHDDQSVPRTDTVQPQPQESIGSPQGIPELPSLDDISDSFWNDLFD |
| NCBI Accession | NP_808753.1 |
|---|---|
| Location | 1462-2544 |
| Gene Name | AC1 |
| Protein Name | replication associated protein Rep |
| Coding Region | ATGCCATCCAAACCACGTCGTTTTAGAGTGCAGGCTAAAAACATTTTCCTTACATATCCACAGTGCCCTCTTACAAAAGAGGAGGCACTTTCCCAATTGCAAGCTATTCAATTACCCTCCAATAAGAAATTCATCAAAATATGCAGAGAGCTTCATGAAGATGGGCAACCTCACCTCCACATCTTGTTGCAATTGGAAGGAAAAATCCAAGTCACAAATAACCGACTGTTCGACCTGGTATCCCCAACTAGGTCAGCACATTTCCATCCGAACATACAGGAGCTAATGGAGCTCCGACGTCAAGTCATACATTTACAAGGACGGGAGATACAGTGGGAATGGGGACAGTTCCAGGTCGACGGAAGAAGTTCAAGGGGAGGACAACAGACAGCTAATGACGCTGCAGCTGAGCCGTTTAATGATCCGGATAAACACACGGCTCTCCAAATCATTAGGGAGAAGTTGCCTGAGAAATATCTTTTTCAGTTTCACAATCTAAATTCTAATTTAGATAGGATTTTCTTAAAGGCTCCGGAGCCATGGACTCCGCCGTTTTCACTTTCCTCCTTCACTAACGTTCCCGTCGAGATGCAAGAGTGGGCGGACGATTATTTTGGGAGGGGTTCAGCTGCGCGGCCATTGAGACCTATGAGTTTGATAGTCGAAGGTGATTCAAGGACAGGGAAGACAATGTGGGCTCGTTCGTTAGGCCCACATAATTACTTGAGTGGACATCTGGACTTCAATTCTAAGGTCTATTCAAACGAAGTGGAATACAACGTCATCGATGATGTCACACCCCAATATCTAAAGTTAAAGCACTGGAAGGGAGCTGATTGGTGCTCAAAAAGACTGGCAGTCAAATTGTTAAGTTACGGAAAGCCAGTTCAAATTAAAGGTGGAATACCATCAATCGTGCTCTGCAATCCTGGGGAGGGAGTCAGTTATAAAGAATTCCTCGACAAAGAAGAGAATGCAGGTCTAAAGTCGTGGACACTCCACAATGCTAAATTCATATTCCTCGACTCCCCCCTCTATCAAACCACGACACAGGGCGGCGAAGAAGAGAGGAACTCGCCGTAG |
| Protein Sequence | MPSKPRRFRVQAKNIFLTYPQCPLTKEEALSQLQAIQLPSNKKFIKICRELHEDGQPHLHILLQLEGKIQVTNNRLFDLVSPTRSAHFHPNIQELMELRRQVIHLQGREIQWEWGQFQVDGRSSRGGQQTANDAAAEPFNDPDKHTALQIIREKLPEKYLFQFHNLNSNLDRIFLKAPEPWTPPFSLSSFTNVPVEMQEWADDYFGRGSAARPLRPMSLIVEGDSRTGKTMWARSLGPHNYLSGHLDFNSKVYSNEVEYNVIDDVTPQYLKLKHWKGADWCSKRLAVKLLSYGKPVQIKGGIPSIVLCNPGEGVSYKEFLDKEENAGLKSWTLHNAKFIFLDSPLYQTTTQGGEEERNSP |
| NCBI Accession | NP_808754.1 |
|---|---|
| Location | 2259-2390 |
| Gene Name | AC4 |
| Protein Name | AC4 protein |
| Coding Region | ATGAAGATGGGCAACCTCACCTCCACATCTTGTTGCAATTGGAAGGAAAAATCCAAGTCACAAATAACCGACTGTTCGACCTGGTATCCCCAACTAGGTCAGCACATTTCCATCCGAACATACAGGAGCTAA |
| Protein Sequence | MKMGNLTSTSCCNWKEKSKSQITDCSTWYPQLGQHISIRTYRS |
References More References in PubMed
| 1 |
Characterization of sida golden mottle virus isolated from Sida santaremensis Monteiro in Florida. Al-Aqeel HA, et al. Arch Virol. 2018 Oct;163(10):2907-2911. doi: 10.1007/s00705-018-3903-x. Epub 2018 Jun 21. PMID: 29931396 |
|---|---|
| 2 |
Queiroz-Ferreira MS, et al. Viruses. 2024 Nov 19;16(11):1796. doi: 10.3390/v16111796. PMID: 39599910 |
| 3 |
De La Torre-Almaraz R, et al. Plant Dis. 2006 Mar;90(3):378. doi: 10.1094/PD-90-0378B. PMID: 30786574 |
| 4 |
Fiallo-Olivé E, et al. Arch Virol. 2012 Jan;157(1):141-6. doi: 10.1007/s00705-011-1123-8. Epub 2011 Oct 1. PMID: 21964921 |
| 5 |
Ramos PL, et al. Arch Virol. 2003 Sep;148(9):1697-712. doi: 10.1007/s00705-003-0136-3. PMID: 14505083 |
| 6 |
Molecular and biological characterization of corchorus mottle virus, a new begomovirus from Brazil. Blawid R, et al. Arch Virol. 2013 Dec;158(12):2603-9. doi: 10.1007/s00705-013-1764-x. Epub 2013 Jun 29. PMID: 23812656 |
| 7 |
Croton golden mosaic virus: a new bipartite begomovirus isolated from Croton hirtus in Colombia. Vaca-Vaca JC, et al. Arch Virol. 2018 Nov;163(11):3199-3202. doi: 10.1007/s00705-018-3989-1. Epub 2018 Aug 10. PMID: 30097742 |
| 8 |
Complete sequence of a new bipartite begomovirus infecting Sida sp. in Northeastern Brazil. Macedo MA, et al. Arch Virol. 2020 Jan;165(1):253-256. doi: 10.1007/s00705-019-04458-9. Epub 2019 Nov 22. PMID: 31758274 |
| 9 |
Hernández-Zepeda C, et al. Virus Genes. 2007 Dec;35(3):825-33. doi: 10.1007/s11262-007-0149-1. Epub 2007 Aug 8. PMID: 17682933 |
| 10 |
Circomics of Cuban geminiviruses reveals the first alpha-satellite DNA in the Caribbean. Jeske H, et al. Virus Genes. 2014 Oct;49(2):312-24. doi: 10.1007/s11262-014-1090-8. Epub 2014 Jun 19. PMID: 24943118 |